RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 IFNA10P01566 189 aa6.95□□□□□ -1.3
VPS29-203ENST00000546588 PMP2P02689 132 aa6.95□□□□□ -1.3
VPS29-203ENST00000546588 CTSDP07339 412 aaPredicted RBP6.95□□□□□ -1.3
VPS29-203ENST00000546588 RCC1P18754 421 aaPredicted RBP6.95□□□□□ -1.3
VPS29-203ENST00000546588 ZBTB25P24278 435 aa6.95□□□□□ -1.3
VPS29-203ENST00000546588 CD80P33681 288 aa6.95□□□□□ -1.3
VPS29-203ENST00000546588 RRAS2P62070 204 aaPredicted RBP6.95□□□□□ -1.3
VPS29-203ENST00000546588 HOXA4Q00056 320 aaPredicted RBP6.95□□□□□ -1.3
VPS29-203ENST00000546588 MEF2CQ06413 473 aaPredicted RBP6.95□□□□□ -1.3
VPS29-203ENST00000546588 HNF4GQ14541 408 aa6.95□□□□□ -1.3
VPS29-203ENST00000546588 ATXN7L3Q14CW9 347 aaPredicted RBP6.95□□□□□ -1.3
VPS29-203ENST00000546588 TCF23Q7RTU1 214 aa6.95□□□□□ -1.3
VPS29-203ENST00000546588 LDLRAD3Q86YD5 345 aa6.95□□□□□ -1.3
VPS29-203ENST00000546588 ZCCHC24Q8N2G6 241 aaKnown RBP6.95□□□□□ -1.3
VPS29-203ENST00000546588 MUC20Q8N307 709 aaPredicted RBP6.95□□□□□ -1.3
VPS29-203ENST00000546588 SPICQ8N5J4 248 aa6.95□□□□□ -1.3
VPS29-203ENST00000546588 NHLRC2Q8NBF2 726 aa6.95□□□□□ -1.3
VPS29-203ENST00000546588 OR6F1Q8NGZ6 308 aa6.95□□□□□ -1.3
VPS29-203ENST00000546588 MRGPRDQ8TDS7 321 aa6.95□□□□□ -1.3
VPS29-203ENST00000546588 CCDC107Q8WV48 283 aa6.95□□□□□ -1.3
VPS29-203ENST00000546588 TMEM230Q96A57 120 aa6.95□□□□□ -1.3
VPS29-203ENST00000546588 TMEM186Q96B77 213 aa6.95□□□□□ -1.3
VPS29-203ENST00000546588 GALNT14Q96FL9 552 aa6.95□□□□□ -1.3
VPS29-203ENST00000546588 C2orf88Q9BSF0 95 aa6.95□□□□□ -1.3
VPS29-203ENST00000546588 MEGF9Q9H1U4 602 aa6.95□□□□□ -1.3
VPS29-203ENST00000546588 RANBP3Q9H6Z4 567 aaPredicted RBP6.95□□□□□ -1.3
VPS29-203ENST00000546588 SHPKQ9UHJ6 478 aa6.95□□□□□ -1.3
VPS29-203ENST00000546588 FLVCR2Q9UPI3 526 aa6.95□□□□□ -1.3
VPS29-203ENST00000546588 LRBAP50851 2863 aa6.95□□□□□ -1.3
VPS29-203ENST00000546588 PKDREJQ9NTG1 2253 aa6.94□□□□□ -1.3
VPS29-203ENST00000546588 USP9XQ93008 2570 aaPredicted RBP6.94□□□□□ -1.3
VPS29-203ENST00000546588 IGHV3-64DA0A0J9YX35 117 aa6.94□□□□□ -1.3
VPS29-203ENST00000546588 ODAMA1E959 279 aa6.94□□□□□ -1.3
VPS29-203ENST00000546588 NKX6-3A6NJ46 265 aa6.94□□□□□ -1.3
VPS29-203ENST00000546588 C12orf77C9JDV5 145 aa6.94□□□□□ -1.3
VPS29-203ENST00000546588 F8WDY8 70 aa6.94□□□□□ -1.3
VPS29-203ENST00000546588 RBP4P02753 201 aa6.94□□□□□ -1.3
VPS29-203ENST00000546588 SCTP09683 121 aa6.94□□□□□ -1.3
VPS29-203ENST00000546588 SULT1A3P0DMM9 295 aa6.94□□□□□ -1.3
VPS29-203ENST00000546588 SULT1A4P0DMN0 295 aa6.94□□□□□ -1.3
VPS29-203ENST00000546588 PLA2G2AP14555 144 aa6.94□□□□□ -1.3
VPS29-203ENST00000546588 GZMHP20718 246 aa6.94□□□□□ -1.3
VPS29-203ENST00000546588 UCP1P25874 307 aa6.94□□□□□ -1.3
VPS29-203ENST00000546588 GPX4P36969 197 aaPredicted RBP6.94□□□□□ -1.3
VPS29-203ENST00000546588 GLP1RP43220 463 aa6.94□□□□□ -1.3
VPS29-203ENST00000546588 SRSF4Q08170 494 aaKnown RBP6.94□□□□□ -1.3
VPS29-203ENST00000546588 TMEM128Q5BJH2 165 aa6.94□□□□□ -1.3
VPS29-203ENST00000546588 LPCAT3Q6P1A2 487 aa6.94□□□□□ -1.3
VPS29-203ENST00000546588 ZNF841Q6ZN19 808 aa6.94□□□□□ -1.3
VPS29-203ENST00000546588 LHFPL4Q7Z7J7 247 aa6.94□□□□□ -1.3
VPS29-203ENST00000546588 LRTM2Q8N967 370 aa6.94□□□□□ -1.3
VPS29-203ENST00000546588 ZFAND1Q8TCF1 268 aa6.94□□□□□ -1.3
VPS29-203ENST00000546588 RAB1CQ92928 201 aa6.94□□□□□ -1.3
VPS29-203ENST00000546588 TMEM246Q9BRR3 403 aa6.94□□□□□ -1.3
VPS29-203ENST00000546588 ZNF2Q9BSG1 426 aaPredicted RBP6.94□□□□□ -1.3
VPS29-203ENST00000546588 RTBDNQ9BSG5 229 aaPredicted RBP6.94□□□□□ -1.3
VPS29-203ENST00000546588 RAB9BQ9NP90 201 aa6.94□□□□□ -1.3
VPS29-203ENST00000546588 OR6C3Q9NZP0 311 aa6.94□□□□□ -1.3
VPS29-203ENST00000546588 CTSZQ9UBR2 303 aa6.94□□□□□ -1.3
VPS29-203ENST00000546588 OR14J1Q9UGF5 321 aa6.94□□□□□ -1.3
VPS29-203ENST00000546588 MLXQ9UH92 298 aa6.94□□□□□ -1.3
VPS29-203ENST00000546588 KIF25Q9UIL4 384 aa6.94□□□□□ -1.3
VPS29-203ENST00000546588 JPT1Q9UK76 154 aa6.94□□□□□ -1.3
VPS29-203ENST00000546588 UBE2J1Q9Y385 318 aaPredicted RBP6.94□□□□□ -1.3
VPS29-203ENST00000546588 LINC00312Q9Y6C7 94 aa6.94□□□□□ -1.3
VPS29-203ENST00000546588 COL12A1Q99715 3063 aa6.94□□□□□ -1.3
VPS29-203ENST00000546588 YLPM1P49750 1951 aaKnown RBP6.93□□□□□ -1.3
VPS29-203ENST00000546588 ABCA4P78363 2273 aa6.93□□□□□ -1.3
VPS29-203ENST00000546588 FAM90A9PA6NNJ1 464 aa6.93□□□□□ -1.3
VPS29-203ENST00000546588 SDCBPO00560 298 aaPredicted RBP6.93□□□□□ -1.3
VPS29-203ENST00000546588 HSPB6O14558 160 aa6.93□□□□□ -1.3
VPS29-203ENST00000546588 CREBL2O60519 120 aaPredicted RBP6.93□□□□□ -1.3
VPS29-203ENST00000546588 DUS4LO95620 317 aaKnown RBP6.93□□□□□ -1.3
VPS29-203ENST00000546588 IGLV2-14P01704 120 aa6.93□□□□□ -1.3
VPS29-203ENST00000546588 PPIFP30405 207 aaKnown RBP6.93□□□□□ -1.3
VPS29-203ENST00000546588 FCGR2CP31995 323 aa6.93□□□□□ -1.3
VPS29-203ENST00000546588 RPL35P42766 123 aaKnown RBP6.93□□□□□ -1.3
VPS29-203ENST00000546588 GABRA2P47869 451 aa6.93□□□□□ -1.3
VPS29-203ENST00000546588 GLIPR1P48060 266 aa6.93□□□□□ -1.3
VPS29-203ENST00000546588 EFNA4P52798 201 aa6.93□□□□□ -1.3
VPS29-203ENST00000546588 TMEM33P57088 247 aa6.93□□□□□ -1.3
VPS29-203ENST00000546588 SUPT4H1P63272 117 aaKnown RBP6.93□□□□□ -1.3
VPS29-203ENST00000546588 AESQ08117 197 aa6.93□□□□□ -1.3
VPS29-203ENST00000546588 GAGE1Q13065 139 aa6.93□□□□□ -1.3
VPS29-203ENST00000546588 DHRS2Q13268 280 aa6.93□□□□□ -1.3
VPS29-203ENST00000546588 EIF4EBP1Q13541 118 aaPredicted RBP6.93□□□□□ -1.3
VPS29-203ENST00000546588 SCGB2B2Q4G0G5 96 aa6.93□□□□□ -1.3
VPS29-203ENST00000546588 FAM201AQ5SY85 155 aa6.93□□□□□ -1.3
VPS29-203ENST00000546588 TCTE3Q8IZS6 198 aa6.93□□□□□ -1.3
VPS29-203ENST00000546588 FAM216BQ8N7L0 139 aa6.93□□□□□ -1.3
VPS29-203ENST00000546588 C8orf31Q8N9H6 132 aa6.93□□□□□ -1.3
VPS29-203ENST00000546588 ZNRF1Q8ND25 227 aa6.93□□□□□ -1.3
VPS29-203ENST00000546588 OR13A1Q8NGR1 328 aa6.93□□□□□ -1.3
VPS29-203ENST00000546588 MARCH1Q8TCQ1 289 aa6.93□□□□□ -1.3
VPS29-203ENST00000546588 NEK7Q8TDX7 302 aa6.93□□□□□ -1.3
VPS29-203ENST00000546588 ZNF431Q8TF32 576 aaPredicted RBP6.93□□□□□ -1.3
VPS29-203ENST00000546588 R3HDM4Q96D70 268 aa6.93□□□□□ -1.3
VPS29-203ENST00000546588 ST6GAL2Q96JF0 529 aa6.93□□□□□ -1.3
VPS29-203ENST00000546588 OR51J1Q9H342 316 aa6.93□□□□□ -1.3
VPS29-203ENST00000546588 TAF9BQ9HBM6 251 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms