RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 PARD6AQ9NPB6 346 aa12.41□□□□□ -0.42
HOXC11-202ENST00000546378 VAMP5O95183 116 aa12.4□□□□□ -0.42
HOXC11-202ENST00000546378 IGKV1-39P01597 117 aa12.4□□□□□ -0.42
HOXC11-202ENST00000546378 IGKV1D-39P04432 117 aa12.4□□□□□ -0.42
HOXC11-202ENST00000546378 CRYGSP22914 178 aa12.4□□□□□ -0.42
HOXC11-202ENST00000546378 SSTR5P35346 364 aa12.4□□□□□ -0.42
HOXC11-202ENST00000546378 CD81P60033 236 aa12.4□□□□□ -0.42
HOXC11-202ENST00000546378 SRPXP78539 464 aa12.4□□□□□ -0.42
HOXC11-202ENST00000546378 ID3Q02535 119 aa12.4□□□□□ -0.42
HOXC11-202ENST00000546378 OR5I1Q13606 314 aa12.4□□□□□ -0.42
HOXC11-202ENST00000546378 NMSQ5H8A3 153 aa12.4□□□□□ -0.42
HOXC11-202ENST00000546378 ATP1A1-AS1Q5TC04 95 aa12.4□□□□□ -0.42
HOXC11-202ENST00000546378 TMEM211Q6ICI0 200 aa12.4□□□□□ -0.42
HOXC11-202ENST00000546378 SLC35E3Q7Z769 313 aa12.4□□□□□ -0.42
HOXC11-202ENST00000546378 TAF15Q92804 592 aaKnown RBP eCLIP12.4□□□□□ -0.42
HOXC11-202ENST00000546378 OR2J1Q9GZK6 312 aa12.4□□□□□ -0.42
HOXC11-202ENST00000546378 HEYLQ9NQ87 328 aaPredicted RBP12.4□□□□□ -0.42
HOXC11-202ENST00000546378 FKBP11Q9NYL4 201 aa12.4□□□□□ -0.42
HOXC11-202ENST00000546378 LMO1P25800 156 aa12.4□□□□□ -0.42
HOXC11-202ENST00000546378 ZNF525Q8N782 197 aa12.4□□□□□ -0.42
HOXC11-202ENST00000546378 ZNF114Q8NC26 417 aa12.4□□□□□ -0.42
HOXC11-202ENST00000546378 DEFB108BQ8NET1 73 aa12.4□□□□□ -0.42
HOXC11-202ENST00000546378 DLL3Q9NYJ7 618 aa12.4□□□□□ -0.42
HOXC11-202ENST00000546378 COL12A1Q99715 3063 aa12.4□□□□□ -0.42
HOXC11-202ENST00000546378 TOX4O94842 621 aa12.4□□□□□ -0.43
HOXC11-202ENST00000546378 MGST1P10620 155 aaKnown RBP12.4□□□□□ -0.43
HOXC11-202ENST00000546378 RAC2P15153 192 aa12.4□□□□□ -0.43
HOXC11-202ENST00000546378 CYB561P49447 251 aa12.4□□□□□ -0.43
HOXC11-202ENST00000546378 ZNF90Q03938 601 aa12.4□□□□□ -0.43
HOXC11-202ENST00000546378 SLC10A1Q14973 349 aa12.4□□□□□ -0.43
HOXC11-202ENST00000546378 HIST3H3Q16695 136 aa12.4□□□□□ -0.43
HOXC11-202ENST00000546378 NUDT16L1Q9BRJ7 211 aaKnown RBP12.4□□□□□ -0.43
HOXC11-202ENST00000546378 DUSP13Q9UII6 198 aa12.4□□□□□ -0.43
HOXC11-202ENST00000546378 TCFL5Q9UL49 500 aa12.4□□□□□ -0.43
HOXC11-202ENST00000546378 CEP295Q9C0D2 2601 aa12.4□□□□□ -0.43
HOXC11-202ENST00000546378 PLA2G2CQ5R387 149 aa12.39□□□□□ -0.43
HOXC11-202ENST00000546378 OR10P1Q8NGE3 313 aa12.39□□□□□ -0.43
HOXC11-202ENST00000546378 M1APQ8TC57 530 aa12.39□□□□□ -0.43
HOXC11-202ENST00000546378 TMEM54Q969K7 222 aa12.39□□□□□ -0.43
HOXC11-202ENST00000546378 TRAV24A0A0B4J272 114 aa12.39□□□□□ -0.43
HOXC11-202ENST00000546378 C9orf172C9J069 976 aa12.39□□□□□ -0.43
HOXC11-202ENST00000546378 F2Z2F3 143 aa12.39□□□□□ -0.43
HOXC11-202ENST00000546378 APELAP0DMC3 54 aa12.39□□□□□ -0.43
HOXC11-202ENST00000546378 IER3P46695 156 aa12.39□□□□□ -0.43
HOXC11-202ENST00000546378 NUBP1P53384 320 aa12.39□□□□□ -0.43
HOXC11-202ENST00000546378 PRAMEF6Q5VXH4 476 aa12.39□□□□□ -0.43
HOXC11-202ENST00000546378 TMEM18Q96B42 140 aa12.39□□□□□ -0.43
HOXC11-202ENST00000546378 SVEP1Q4LDE5 3571 aa12.39□□□□□ -0.43
HOXC11-202ENST00000546378 FCGR3BO75015 233 aa12.38□□□□□ -0.43
HOXC11-202ENST00000546378 MBP02144 154 aa12.38□□□□□ -0.43
HOXC11-202ENST00000546378 GATA2P23769 480 aaPredicted RBP12.38□□□□□ -0.43
HOXC11-202ENST00000546378 PDLIM3Q53GG5 364 aaPredicted RBP12.38□□□□□ -0.43
HOXC11-202ENST00000546378 LOXL4Q96JB6 756 aa12.38□□□□□ -0.43
HOXC11-202ENST00000546378 PROK2Q9HC23 129 aa12.38□□□□□ -0.43
HOXC11-202ENST00000546378 GNG12Q9UBI6 72 aa12.38□□□□□ -0.43
HOXC11-202ENST00000546378 NAT8Q9UHE5 227 aa12.38□□□□□ -0.43
HOXC11-202ENST00000546378 SYNGR4O95473 234 aa12.38□□□□□ -0.43
HOXC11-202ENST00000546378 MYOD1P15172 320 aa12.38□□□□□ -0.43
HOXC11-202ENST00000546378 TAS2R60P59551 318 aa12.38□□□□□ -0.43
HOXC11-202ENST00000546378 H2BFWTQ7Z2G1 175 aa12.38□□□□□ -0.43
HOXC11-202ENST00000546378 TMEM183AQ8IXX5 376 aa12.38□□□□□ -0.43
HOXC11-202ENST00000546378 H1FOOQ8IZA3 346 aaPredicted RBP12.38□□□□□ -0.43
HOXC11-202ENST00000546378 DRAM1Q8N682 238 aa12.38□□□□□ -0.43
HOXC11-202ENST00000546378 IGHV1-45A0A0A0MS14 117 aa12.38□□□□□ -0.43
HOXC11-202ENST00000546378 C17orf98A8MV24 154 aa12.38□□□□□ -0.43
HOXC11-202ENST00000546378 TGOLN2O43493 480 aa12.38□□□□□ -0.43
HOXC11-202ENST00000546378 COX6A1P12074 109 aa12.38□□□□□ -0.43
HOXC11-202ENST00000546378 UCP1P25874 307 aa12.38□□□□□ -0.43
HOXC11-202ENST00000546378 PCBD1P61457 104 aa12.38□□□□□ -0.43
HOXC11-202ENST00000546378 RPL30P62888 115 aaKnown RBP12.38□□□□□ -0.43
HOXC11-202ENST00000546378 PRR27Q6MZM9 219 aa12.38□□□□□ -0.43
HOXC11-202ENST00000546378 MRPL54Q6P161 138 aaKnown RBP12.38□□□□□ -0.43
HOXC11-202ENST00000546378 NUFIP2Q7Z417 695 aaKnown RBP12.38□□□□□ -0.43
HOXC11-202ENST00000546378 ABHD12Q8N2K0 398 aa12.38□□□□□ -0.43
HOXC11-202ENST00000546378 HSPB9Q9BQS6 159 aa12.38□□□□□ -0.43
HOXC11-202ENST00000546378 SNHG12Q9BXW3 62 aa12.38□□□□□ -0.43
HOXC11-202ENST00000546378 RYDENQ9NUL5 291 aaKnown RBP12.38□□□□□ -0.43
HOXC11-202ENST00000546378 A0A1W2PNU3 283 aaPredicted RBP12.37□□□□□ -0.43
HOXC11-202ENST00000546378 OR2H2O95918 312 aa12.37□□□□□ -0.43
HOXC11-202ENST00000546378 OTX1P32242 354 aaPredicted RBP12.37□□□□□ -0.43
HOXC11-202ENST00000546378 C10orf128Q5T292 105 aa12.37□□□□□ -0.43
HOXC11-202ENST00000546378 MIC13Q5XKP0 118 aa12.37□□□□□ -0.43
HOXC11-202ENST00000546378 APH1AQ96BI3 265 aa12.37□□□□□ -0.43
HOXC11-202ENST00000546378 WNT10AQ9GZT5 417 aa12.37□□□□□ -0.43
HOXC11-202ENST00000546378 COL6A6A6NMZ7 2263 aa12.37□□□□□ -0.43
HOXC11-202ENST00000546378 CST2P09228 141 aa12.37□□□□□ -0.43
HOXC11-202ENST00000546378 OR10J4P0C629 311 aa12.37□□□□□ -0.43
HOXC11-202ENST00000546378 KITLGP21583 273 aa12.37□□□□□ -0.43
HOXC11-202ENST00000546378 PAX6P26367 422 aa12.37□□□□□ -0.43
HOXC11-202ENST00000546378 WDYHV1Q96HA8 205 aa12.37□□□□□ -0.43
HOXC11-202ENST00000546378 CA1P00915 261 aaPredicted RBP12.36□□□□□ -0.43
HOXC11-202ENST00000546378 FGF12P61328 243 aa12.36□□□□□ -0.43
HOXC11-202ENST00000546378 RNF151Q2KHN1 245 aa12.36□□□□□ -0.43
HOXC11-202ENST00000546378 MRGPRGQ86SM5 289 aa12.36□□□□□ -0.43
HOXC11-202ENST00000546378 FAM19A2Q8N3H0 131 aa12.36□□□□□ -0.43
HOXC11-202ENST00000546378 WDR61Q9GZS3 305 aaKnown RBP12.36□□□□□ -0.43
HOXC11-202ENST00000546378 CPAMD8Q8IZJ3 1885 aa12.36□□□□□ -0.43
HOXC11-202ENST00000546378 DYSFO75923 2080 aa12.36□□□□□ -0.43
HOXC11-202ENST00000546378 IGHV3OR15-7A0A075B7D8 119 aa12.36□□□□□ -0.43
HOXC11-202ENST00000546378 MDFIC2A0A1B0GVS7 189 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms