RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 LINC01560Q8TB33 94 aa6.74□□□□□ -1.33
VPS13D-211ENST00000543710 MOGAT1Q96PD6 335 aa6.74□□□□□ -1.33
VPS13D-211ENST00000543710 MAP1LC3AQ9H492 121 aa6.74□□□□□ -1.33
VPS13D-211ENST00000543710 SLC25A10Q9UBX3 287 aaPredicted RBP6.74□□□□□ -1.33
VPS13D-211ENST00000543710 ING1Q9UK53 422 aaPredicted RBP6.74□□□□□ -1.33
VPS13D-211ENST00000543710 NKX2-6A6NCS4 301 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 GNG7O60262 68 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 LIPFP07098 398 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 RD3LP0DJH9 198 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 LRRC75BQ2VPJ9 315 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 GLRX5Q86SX6 157 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 OR4X1Q8NH49 305 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 GTF3AQ92664 365 aaKnown RBP6.73□□□□□ -1.33
VPS13D-211ENST00000543710 AP5S1Q9NUS5 200 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 DLL3Q9NYJ7 618 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 PAX1P15863 534 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 FCER1GP30273 86 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 NPBWR2P48146 333 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 COL10A1Q03692 680 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 PCSK4Q6UW60 755 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 PARD6GQ9BYG4 376 aaPredicted RBP6.73□□□□□ -1.33
VPS13D-211ENST00000543710 PARP12Q9H0J9 701 aaKnown RBP6.73□□□□□ -1.33
VPS13D-211ENST00000543710 MRPS18BQ9Y676 258 aaKnown RBP6.73□□□□□ -1.33
VPS13D-211ENST00000543710 DIRC3C9JPN6 131 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 NDUFS8O00217 210 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 SOCS1O15524 211 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 TRGC1P0CF51 173 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 FABP2P12104 132 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 ATP6V0CP27449 155 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 VWA1Q6PCB0 445 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 TMEM88Q6PEY1 159 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 OR10J6PQ8NGY7 276 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 STARD4Q96DR4 205 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 Q96M66 194 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 G6PC2Q9NQR9 355 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 PPIAL4EA0A075B759 164 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 B4DSR2 109 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 PPIAL4DF5H284 164 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 ZNF253O75346 499 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 ZNF735P0CB33 412 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 PPIAL4FP0DN26 164 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 CXCL2P19875 107 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 RRN3P1Q2M238 152 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 RASL11AQ6T310 242 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 MRGPRDQ8TDS7 321 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 SFRP2Q96HF1 295 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 METTL26Q96S19 204 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 CBLN4Q9NTU7 201 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 PPIAL4AQ9Y536 164 aa6.73□□□□□ -1.33
VPS13D-211ENST00000543710 NPIPB6E9PJ23 425 aa6.72□□□□□ -1.33
VPS13D-211ENST00000543710 PSG2P11465 335 aa6.72□□□□□ -1.33
VPS13D-211ENST00000543710 PI3P19957 117 aa6.72□□□□□ -1.33
VPS13D-211ENST00000543710 COL8A1P27658 744 aa6.72□□□□□ -1.33
VPS13D-211ENST00000543710 BLNKQ8WV28 456 aa6.72□□□□□ -1.33
VPS13D-211ENST00000543710 PXMP4Q9Y6I8 212 aa6.72□□□□□ -1.33
VPS13D-211ENST00000543710 SIPA1L1O43166 1804 aa6.72□□□□□ -1.33
VPS13D-211ENST00000543710 TRAV20A0A0B4J274 112 aa6.72□□□□□ -1.33
VPS13D-211ENST00000543710 LILRA1O75019 489 aa6.72□□□□□ -1.33
VPS13D-211ENST00000543710 FOXL1Q12952 345 aa6.72□□□□□ -1.33
VPS13D-211ENST00000543710 TMEM136Q6ZRR5 245 aa6.72□□□□□ -1.33
VPS13D-211ENST00000543710 PPP1R32Q7Z5V6 425 aa6.72□□□□□ -1.33
VPS13D-211ENST00000543710 SLC25A2Q9BXI2 301 aa6.72□□□□□ -1.33
VPS13D-211ENST00000543710 MRPL37Q9BZE1 423 aaKnown RBP6.72□□□□□ -1.33
VPS13D-211ENST00000543710 COA4Q9NYJ1 87 aa6.72□□□□□ -1.33
VPS13D-211ENST00000543710 ZNF646O15015 1829 aaPredicted RBP6.72□□□□□ -1.33
VPS13D-211ENST00000543710 VSIG10L2P0DP72 767 aa6.72□□□□□ -1.33
VPS13D-211ENST00000543710 GNG10P50151 68 aa6.72□□□□□ -1.33
VPS13D-211ENST00000543710 SAPCD1Q5SSQ6 148 aa6.72□□□□□ -1.33
VPS13D-211ENST00000543710 TMEM37Q8WXS4 190 aa6.72□□□□□ -1.33
VPS13D-211ENST00000543710 SMIM12Q96EX1 92 aa6.72□□□□□ -1.33
VPS13D-211ENST00000543710 MAJINQ3KP22 176 aa6.72□□□□□ -1.33
VPS13D-211ENST00000543710 CCL28Q9NRJ3 127 aa6.72□□□□□ -1.33
VPS13D-211ENST00000543710 FAM221AA4D161 298 aa6.72□□□□□ -1.33
VPS13D-211ENST00000543710 TMEM14DPA8MWL7 114 aa6.72□□□□□ -1.33
VPS13D-211ENST00000543710 PGLYRP1O75594 196 aaPredicted RBP6.72□□□□□ -1.33
VPS13D-211ENST00000543710 PSMB2P49721 201 aa6.72□□□□□ -1.33
VPS13D-211ENST00000543710 REC114Q7Z4M0 266 aa6.72□□□□□ -1.33
VPS13D-211ENST00000543710 SLC25A45Q8N413 288 aa6.72□□□□□ -1.33
VPS13D-211ENST00000543710 RAB37Q96AX2 223 aa6.72□□□□□ -1.33
VPS13D-211ENST00000543710 LPAR5Q9H1C0 372 aa6.72□□□□□ -1.33
VPS13D-211ENST00000543710 WDR13Q9H1Z4 485 aa6.72□□□□□ -1.33
VPS13D-211ENST00000543710 ZNF703Q9H7S9 590 aaPredicted RBP6.72□□□□□ -1.33
VPS13D-211ENST00000543710 PAGE4O60829 102 aa6.71□□□□□ -1.33
VPS13D-211ENST00000543710 UPK3AO75631 287 aa6.71□□□□□ -1.33
VPS13D-211ENST00000543710 NUDT3O95989 172 aa6.71□□□□□ -1.33
VPS13D-211ENST00000543710 PRDX2P32119 198 aa6.71□□□□□ -1.33
VPS13D-211ENST00000543710 GPX4P36969 197 aaPredicted RBP6.71□□□□□ -1.33
VPS13D-211ENST00000543710 DLX1P56177 255 aa6.71□□□□□ -1.33
VPS13D-211ENST00000543710 SPATA45Q537H7 98 aa6.71□□□□□ -1.33
VPS13D-211ENST00000543710 MBD3L1Q8WWY6 194 aa6.71□□□□□ -1.33
VPS13D-211ENST00000543710 SRD5A3Q9H8P0 318 aa6.71□□□□□ -1.33
VPS13D-211ENST00000543710 LTBP1Q14766 1721 aa6.71□□□□□ -1.33
VPS13D-211ENST00000543710 C5orf52A6NGY3 159 aa6.71□□□□□ -1.34
VPS13D-211ENST00000543710 J3QR06 171 aa6.71□□□□□ -1.34
VPS13D-211ENST00000543710 KLF4O43474 513 aa6.71□□□□□ -1.34
VPS13D-211ENST00000543710 CA2P00918 260 aa6.71□□□□□ -1.34
VPS13D-211ENST00000543710 THY1P04216 161 aa6.71□□□□□ -1.34
VPS13D-211ENST00000543710 ARG1P05089 322 aa6.71□□□□□ -1.34
VPS13D-211ENST00000543710 ALKBH6Q3KRA9 238 aa6.71□□□□□ -1.34
VPS13D-211ENST00000543710 RNASEH2CQ8TDP1 164 aaKnown RBP6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms