RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 PLEKHJ1Q9NW61 149 aa11.74□□□□□ -0.53
CLSTN3-213ENST00000541953 FKBP14Q9NWM8 211 aa11.74□□□□□ -0.53
CLSTN3-213ENST00000541953 DNAH10Q8IVF4 4471 aa11.74□□□□□ -0.53
CLSTN3-213ENST00000541953 C13orf42A0A1B0GVH6 325 aa11.73□□□□□ -0.53
CLSTN3-213ENST00000541953 SRRM4A7MD48 611 aaKnown RBP11.73□□□□□ -0.53
CLSTN3-213ENST00000541953 ZP3P21754 424 aa11.73□□□□□ -0.53
CLSTN3-213ENST00000541953 MAPK3P27361 379 aaPredicted RBP11.73□□□□□ -0.53
CLSTN3-213ENST00000541953 MED21Q13503 144 aa11.73□□□□□ -0.53
CLSTN3-213ENST00000541953 TTC23Q5W5X9 447 aa11.73□□□□□ -0.53
CLSTN3-213ENST00000541953 PDPNQ86YL7 162 aa11.73□□□□□ -0.53
CLSTN3-213ENST00000541953 KCNG3Q8TAE7 436 aa11.73□□□□□ -0.53
CLSTN3-213ENST00000541953 FBLIM1Q8WUP2 373 aa11.73□□□□□ -0.53
CLSTN3-213ENST00000541953 ARHGAP5-AS1Q96IT6 56 aa11.73□□□□□ -0.53
CLSTN3-213ENST00000541953 TSNAXQ99598 290 aaKnown RBP11.73□□□□□ -0.53
CLSTN3-213ENST00000541953 PLEKHA3Q9HB20 300 aa11.73□□□□□ -0.53
CLSTN3-213ENST00000541953 RDH8Q9NYR8 311 aa11.73□□□□□ -0.53
CLSTN3-213ENST00000541953 LSM2Q9Y333 95 aaKnown RBP11.73□□□□□ -0.53
CLSTN3-213ENST00000541953 M0R1X1 148 aa11.72□□□□□ -0.53
CLSTN3-213ENST00000541953 ZBTB25P24278 435 aa11.72□□□□□ -0.53
CLSTN3-213ENST00000541953 PLAC9Q5JTB6 97 aa11.72□□□□□ -0.53
CLSTN3-213ENST00000541953 GLT8D1Q68CQ7 371 aa11.72□□□□□ -0.53
CLSTN3-213ENST00000541953 FAM89BQ8N5H3 189 aa11.72□□□□□ -0.53
CLSTN3-213ENST00000541953 DHRSXQ8N5I4 330 aa11.72□□□□□ -0.53
CLSTN3-213ENST00000541953 SETD9Q8NE22 299 aa11.72□□□□□ -0.53
CLSTN3-213ENST00000541953 BPIFB6Q8NFQ5 453 aa11.72□□□□□ -0.53
CLSTN3-213ENST00000541953 EDARADDQ8WWZ3 215 aa11.72□□□□□ -0.53
CLSTN3-213ENST00000541953 PHYHIPQ92561 330 aa11.72□□□□□ -0.53
CLSTN3-213ENST00000541953 TINAGL1Q9GZM7 467 aaPredicted RBP11.72□□□□□ -0.53
CLSTN3-213ENST00000541953 HIPK2Q9H2X6 1198 aa11.72□□□□□ -0.53
CLSTN3-213ENST00000541953 SLC35D1Q9NTN3 355 aa11.72□□□□□ -0.53
CLSTN3-213ENST00000541953 H3BUA1 57 aa11.71□□□□□ -0.53
CLSTN3-213ENST00000541953 BPNT1O95861 308 aa11.71□□□□□ -0.53
CLSTN3-213ENST00000541953 PRH1P02810 166 aa11.71□□□□□ -0.53
CLSTN3-213ENST00000541953 MECP2P51608 486 aaKnown RBP11.71□□□□□ -0.53
CLSTN3-213ENST00000541953 CLDN12P56749 244 aa11.71□□□□□ -0.53
CLSTN3-213ENST00000541953 ZNF343Q6P1L6 599 aa11.71□□□□□ -0.53
CLSTN3-213ENST00000541953 LINC00322Q6ZN03 302 aaPredicted RBP11.71□□□□□ -0.53
CLSTN3-213ENST00000541953 CEACAM19Q7Z692 300 aa11.71□□□□□ -0.53
CLSTN3-213ENST00000541953 BVESQ8NE79 360 aa11.71□□□□□ -0.53
CLSTN3-213ENST00000541953 PECRQ9BY49 303 aa11.71□□□□□ -0.53
CLSTN3-213ENST00000541953 PLCXD1Q9NUJ7 323 aa11.71□□□□□ -0.53
CLSTN3-213ENST00000541953 SDHAF2Q9NX18 166 aa11.71□□□□□ -0.53
CLSTN3-213ENST00000541953 PEF1Q9UBV8 284 aaKnown RBP11.71□□□□□ -0.53
CLSTN3-213ENST00000541953 SELENOKQ9Y6D0 94 aa11.71□□□□□ -0.53
CLSTN3-213ENST00000541953 CNIH1O95406 144 aa11.7□□□□□ -0.54
CLSTN3-213ENST00000541953 APOA2P02652 100 aa11.7□□□□□ -0.54
CLSTN3-213ENST00000541953 UCHL1P09936 223 aa11.7□□□□□ -0.54
CLSTN3-213ENST00000541953 SRMP19623 302 aa11.7□□□□□ -0.54
CLSTN3-213ENST00000541953 CD40LGP29965 261 aa11.7□□□□□ -0.54
CLSTN3-213ENST00000541953 ZNF45Q02386 682 aa11.7□□□□□ -0.54
CLSTN3-213ENST00000541953 HSD17B12Q53GQ0 312 aa11.7□□□□□ -0.54
CLSTN3-213ENST00000541953 IGSF11Q5DX21 431 aa11.7□□□□□ -0.54
CLSTN3-213ENST00000541953 TMEM91Q6ZNR0 172 aa11.7□□□□□ -0.54
CLSTN3-213ENST00000541953 OR6M1Q8NGM8 313 aa11.7□□□□□ -0.54
CLSTN3-213ENST00000541953 HARBI1Q96MB7 349 aa11.7□□□□□ -0.54
CLSTN3-213ENST00000541953 OR2D2Q9H210 308 aa11.7□□□□□ -0.54
CLSTN3-213ENST00000541953 C12orf4Q9NQ89 552 aa11.7□□□□□ -0.54
CLSTN3-213ENST00000541953 ZNF221Q9UK13 617 aa11.7□□□□□ -0.54
CLSTN3-213ENST00000541953 KCNK7Q9Y2U2 307 aa11.7□□□□□ -0.54
CLSTN3-213ENST00000541953 RBMY1BA6NDE4 496 aaKnown RBP11.69□□□□□ -0.54
CLSTN3-213ENST00000541953 RBMY1EA6NEQ0 496 aaKnown RBP11.69□□□□□ -0.54
CLSTN3-213ENST00000541953 BMPR1BO00238 502 aa11.69□□□□□ -0.54
CLSTN3-213ENST00000541953 CD7P09564 240 aa11.69□□□□□ -0.54
CLSTN3-213ENST00000541953 RBMY1DP0C7P1 496 aaKnown RBP11.69□□□□□ -0.54
CLSTN3-213ENST00000541953 MOGAT2Q3SYC2 334 aa11.69□□□□□ -0.54
CLSTN3-213ENST00000541953 IDO2Q6ZQW0 420 aa11.69□□□□□ -0.54
CLSTN3-213ENST00000541953 C19orf35Q6ZS72 473 aa11.69□□□□□ -0.54
CLSTN3-213ENST00000541953 C10orf67Q8IYJ2 551 aa11.69□□□□□ -0.54
CLSTN3-213ENST00000541953 C8orf59Q8N0T1 100 aaPredicted RBP11.69□□□□□ -0.54
CLSTN3-213ENST00000541953 ADAD2Q8NCV1 583 aaKnown RBP11.69□□□□□ -0.54
CLSTN3-213ENST00000541953 MAFIPQ8WZ33 124 aa11.69□□□□□ -0.54
CLSTN3-213ENST00000541953 THRSPQ92748 146 aa11.69□□□□□ -0.54
CLSTN3-213ENST00000541953 TMEM203Q969S6 136 aa11.69□□□□□ -0.54
CLSTN3-213ENST00000541953 TUBA4BQ9H853 241 aa11.69□□□□□ -0.54
CLSTN3-213ENST00000541953 COA4Q9NYJ1 87 aa11.69□□□□□ -0.54
CLSTN3-213ENST00000541953 HSF4Q9ULV5 492 aa11.69□□□□□ -0.54
CLSTN3-213ENST00000541953 AK6Q9Y3D8 172 aaKnown RBP11.69□□□□□ -0.54
CLSTN3-213ENST00000541953 CEPT1Q9Y6K0 416 aa11.69□□□□□ -0.54
CLSTN3-213ENST00000541953 A0A0G2JLM5 398 aa11.68□□□□□ -0.54
CLSTN3-213ENST00000541953 H0Y980 276 aa11.68□□□□□ -0.54
CLSTN3-213ENST00000541953 SLC17A2O00624 439 aa11.68□□□□□ -0.54
CLSTN3-213ENST00000541953 CDK1P06493 297 aa11.68□□□□□ -0.54
CLSTN3-213ENST00000541953 RPS25P62851 125 aaKnown RBP11.68□□□□□ -0.54
CLSTN3-213ENST00000541953 CD300EQ496F6 205 aaPredicted RBP11.68□□□□□ -0.54
CLSTN3-213ENST00000541953 C10orf55Q5SWW7 151 aa11.68□□□□□ -0.54
CLSTN3-213ENST00000541953 LIPKQ5VXJ0 399 aa11.68□□□□□ -0.54
CLSTN3-213ENST00000541953 LCN12Q6JVE5 192 aa11.68□□□□□ -0.54
CLSTN3-213ENST00000541953 GTSCR1Q86UQ5 136 aa11.68□□□□□ -0.54
CLSTN3-213ENST00000541953 Q8N402 240 aa11.68□□□□□ -0.54
CLSTN3-213ENST00000541953 MS4A15Q8N5U1 240 aa11.68□□□□□ -0.54
CLSTN3-213ENST00000541953 DEFB125Q8N687 156 aa11.68□□□□□ -0.54
CLSTN3-213ENST00000541953 CMSS1Q9BQ75 279 aaKnown RBP11.68□□□□□ -0.54
CLSTN3-213ENST00000541953 RIMS4Q9H426 269 aaPredicted RBP11.68□□□□□ -0.54
CLSTN3-213ENST00000541953 ZNF230Q9UIE0 474 aaPredicted RBP11.68□□□□□ -0.54
CLSTN3-213ENST00000541953 MSGN1A6NI15 193 aa11.67□□□□□ -0.54
CLSTN3-213ENST00000541953 ZNF785A8K8V0 405 aa11.67□□□□□ -0.54
CLSTN3-213ENST00000541953 TRDCB7Z8K6 153 aa11.67□□□□□ -0.54
CLSTN3-213ENST00000541953 BET1O15155 118 aa11.67□□□□□ -0.54
CLSTN3-213ENST00000541953 BRI3O95415 125 aa11.67□□□□□ -0.54
CLSTN3-213ENST00000541953 GSTT2P0CG29 244 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms