RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 OR10V1Q8NGI7 309 aa14.37□□□□□ -0.11
SPIDR-227ENST00000541342 PSMG3Q9BT73 122 aaPredicted RBP14.37□□□□□ -0.11
SPIDR-227ENST00000541342 USF3Q68DE3 2245 aa14.37□□□□□ -0.11
SPIDR-227ENST00000541342 CDIPTO14735 213 aa14.37□□□□□ -0.11
SPIDR-227ENST00000541342 CD55P08174 381 aa14.37□□□□□ -0.11
SPIDR-227ENST00000541342 FABP6P51161 128 aa14.37□□□□□ -0.11
SPIDR-227ENST00000541342 ZNF83P51522 516 aa14.37□□□□□ -0.11
SPIDR-227ENST00000541342 LRRC75BQ2VPJ9 315 aa14.37□□□□□ -0.11
SPIDR-227ENST00000541342 TIMM23BQ5SRD1 257 aa14.37□□□□□ -0.11
SPIDR-227ENST00000541342 Q6ZR03 302 aa14.37□□□□□ -0.11
SPIDR-227ENST00000541342 C1orf87Q8N0U7 546 aa14.37□□□□□ -0.11
SPIDR-227ENST00000541342 LSM10Q969L4 123 aaKnown RBP14.37□□□□□ -0.11
SPIDR-227ENST00000541342 PLK3Q9H4B4 646 aa14.37□□□□□ -0.11
SPIDR-227ENST00000541342 ERVK11-1P61568 191 aa14.36□□□□□ -0.11
SPIDR-227ENST00000541342 PNRC1Q12796 327 aaPredicted RBP14.36□□□□□ -0.11
SPIDR-227ENST00000541342 WDR25Q64LD2 544 aaPredicted RBP14.36□□□□□ -0.11
SPIDR-227ENST00000541342 C22orf34Q6ZV56 151 aa14.36□□□□□ -0.11
SPIDR-227ENST00000541342 LINC00596Q86U02 117 aa14.36□□□□□ -0.11
SPIDR-227ENST00000541342 SNRNP40Q96DI7 357 aaKnown RBP14.36□□□□□ -0.11
SPIDR-227ENST00000541342 PSENENQ9NZ42 101 aa14.36□□□□□ -0.11
SPIDR-227ENST00000541342 PPP1R3CQ9UQK1 317 aa14.36□□□□□ -0.11
SPIDR-227ENST00000541342 RAXQ9Y2V3 346 aa14.36□□□□□ -0.11
SPIDR-227ENST00000541342 NPIPB11E5RHQ5 1161 aa14.36□□□□□ -0.11
SPIDR-227ENST00000541342 CLDN34H7C241 214 aa14.36□□□□□ -0.11
SPIDR-227ENST00000541342 LY86O95711 162 aa14.36□□□□□ -0.11
SPIDR-227ENST00000541342 IGKV1D-33P01593 117 aa14.36□□□□□ -0.11
SPIDR-227ENST00000541342 IGKV1-33P01594 117 aa14.36□□□□□ -0.11
SPIDR-227ENST00000541342 MDKP21741 143 aaPredicted RBP14.36□□□□□ -0.11
SPIDR-227ENST00000541342 BMP5P22003 454 aa14.36□□□□□ -0.11
SPIDR-227ENST00000541342 MDH2P40926 338 aaKnown RBP14.36□□□□□ -0.11
SPIDR-227ENST00000541342 Q6P435 159 aa14.36□□□□□ -0.11
SPIDR-227ENST00000541342 UBALD1Q8TB05 177 aa14.36□□□□□ -0.11
SPIDR-227ENST00000541342 RBKSQ9H477 322 aa14.36□□□□□ -0.11
SPIDR-227ENST00000541342 ELOA3CA0A087WX78 387 aaPredicted RBP14.36□□□□□ -0.11
SPIDR-227ENST00000541342 GRPP07492 148 aa14.36□□□□□ -0.11
SPIDR-227ENST00000541342 KITLGP21583 273 aa14.36□□□□□ -0.11
SPIDR-227ENST00000541342 MSMPQ1L6U9 139 aa14.36□□□□□ -0.11
SPIDR-227ENST00000541342 A0A0G2JNJ9 132 aa14.35□□□□□ -0.11
SPIDR-227ENST00000541342 A8MXE2 369 aa14.35□□□□□ -0.11
SPIDR-227ENST00000541342 PGA5P0DJD9 388 aa14.35□□□□□ -0.11
SPIDR-227ENST00000541342 FAM27E3Q08E93 113 aa14.35□□□□□ -0.11
SPIDR-227ENST00000541342 SCGB1C1Q8TD33 95 aa14.35□□□□□ -0.11
SPIDR-227ENST00000541342 Q9UFV3 132 aa14.35□□□□□ -0.11
SPIDR-227ENST00000541342 TRBV24-1A0A075B6N3 115 aa14.35□□□□□ -0.11
SPIDR-227ENST00000541342 PRRG2O14669 202 aa14.35□□□□□ -0.11
SPIDR-227ENST00000541342 FABP4P15090 132 aa14.35□□□□□ -0.11
SPIDR-227ENST00000541342 MBNL2Q5VZF2 373 aaKnown RBP14.35□□□□□ -0.11
SPIDR-227ENST00000541342 RNASE11Q8TAA1 199 aaKnown RBP14.35□□□□□ -0.11
SPIDR-227ENST00000541342 RHOVQ96L33 236 aa14.35□□□□□ -0.11
SPIDR-227ENST00000541342 OR4C12Q96R67 309 aa14.35□□□□□ -0.11
SPIDR-227ENST00000541342 WDR61Q9GZS3 305 aaKnown RBP14.35□□□□□ -0.11
SPIDR-227ENST00000541342 M0R1B8 84 aa14.35□□□□□ -0.11
SPIDR-227ENST00000541342 TIMM8AO60220 97 aaPredicted RBP14.35□□□□□ -0.11
SPIDR-227ENST00000541342 PTBP3O95758 552 aaKnown RBP14.35□□□□□ -0.11
SPIDR-227ENST00000541342 TMPRSS3P57727 454 aa14.35□□□□□ -0.11
SPIDR-227ENST00000541342 CD81P60033 236 aa14.35□□□□□ -0.11
SPIDR-227ENST00000541342 HOXA4Q00056 320 aaPredicted RBP14.35□□□□□ -0.11
SPIDR-227ENST00000541342 GAMTQ14353 236 aa14.35□□□□□ -0.11
SPIDR-227ENST00000541342 GFRALQ6UXV0 394 aa14.35□□□□□ -0.11
SPIDR-227ENST00000541342 ZNF600Q6ZNG1 722 aa14.35□□□□□ -0.11
SPIDR-227ENST00000541342 C11orf53Q8IXP5 236 aa14.35□□□□□ -0.11
SPIDR-227ENST00000541342 PRR18Q8N4B5 295 aa14.35□□□□□ -0.11
SPIDR-227ENST00000541342 DOCK11Q5JSL3 2073 aa14.34□□□□□ -0.11
SPIDR-227ENST00000541342 DEGS1O15121 323 aa14.34□□□□□ -0.11
SPIDR-227ENST00000541342 S100GP29377 79 aa14.34□□□□□ -0.11
SPIDR-227ENST00000541342 SNX22Q96L94 193 aa14.34□□□□□ -0.11
SPIDR-227ENST00000541342 MSL2Q9HCI7 577 aa14.34□□□□□ -0.11
SPIDR-227ENST00000541342 TLN1Q9Y490 2541 aaKnown RBP14.34□□□□□ -0.11
SPIDR-227ENST00000541342 CADP27708 2225 aa14.34□□□□□ -0.11
SPIDR-227ENST00000541342 TUBG1P23258 451 aa14.34□□□□□ -0.11
SPIDR-227ENST00000541342 ZNF718Q3SXZ3 478 aa14.34□□□□□ -0.11
SPIDR-227ENST00000541342 TMEM41BQ5BJD5 291 aa14.34□□□□□ -0.11
SPIDR-227ENST00000541342 UNQ6494/PRO21346Q6UXR6 183 aa14.34□□□□□ -0.11
SPIDR-227ENST00000541342 RPP25LQ8N5L8 163 aaKnown RBP14.34□□□□□ -0.11
SPIDR-227ENST00000541342 P2RX4Q99571 388 aa14.34□□□□□ -0.11
SPIDR-227ENST00000541342 TUBG2Q9NRH3 451 aa14.34□□□□□ -0.11
SPIDR-227ENST00000541342 VAX2Q9UIW0 290 aa14.34□□□□□ -0.11
SPIDR-227ENST00000541342 ZNF835Q9Y2P0 537 aa14.34□□□□□ -0.11
SPIDR-227ENST00000541342 POLDIP2Q9Y2S7 368 aa14.34□□□□□ -0.11
SPIDR-227ENST00000541342 ADGRG4Q8IZF6 3080 aa14.34□□□□□ -0.11
SPIDR-227ENST00000541342 TMEM210A6NLX4 147 aa14.33□□□□□ -0.11
SPIDR-227ENST00000541342 CEBPZOSA8MTT3 80 aa14.33□□□□□ -0.11
SPIDR-227ENST00000541342 ELLP55199 621 aaPredicted RBP14.33□□□□□ -0.11
SPIDR-227ENST00000541342 SERF2P84101 59 aa14.33□□□□□ -0.11
SPIDR-227ENST00000541342 TLE1Q04724 770 aa14.33□□□□□ -0.11
SPIDR-227ENST00000541342 HIST1H2BLQ99880 126 aa14.33□□□□□ -0.11
SPIDR-227ENST00000541342 SH3BGRL2Q9UJC5 107 aa14.33□□□□□ -0.11
SPIDR-227ENST00000541342 MAP1LC3B2A6NCE7 125 aa14.33□□□□□ -0.12
SPIDR-227ENST00000541342 ZNF826PQ6ZT77 177 aa14.33□□□□□ -0.12
SPIDR-227ENST00000541342 MRGPRGQ86SM5 289 aa14.33□□□□□ -0.12
SPIDR-227ENST00000541342 LRP11Q86VZ4 500 aa14.33□□□□□ -0.12
SPIDR-227ENST00000541342 C14orf144Q96I85 54 aa14.33□□□□□ -0.12
SPIDR-227ENST00000541342 MAP1LC3BQ9GZQ8 125 aa14.33□□□□□ -0.12
SPIDR-227ENST00000541342 GCH1P30793 250 aa14.33□□□□□ -0.12
SPIDR-227ENST00000541342 CCKARP32238 428 aa14.33□□□□□ -0.12
SPIDR-227ENST00000541342 RNF150Q9ULK6 438 aa14.33□□□□□ -0.12
SPIDR-227ENST00000541342 SPANXN5Q5MJ07 72 aa14.32□□□□□ -0.12
SPIDR-227ENST00000541342 ZNF497Q6ZNH5 498 aa14.32□□□□□ -0.12
SPIDR-227ENST00000541342 UBE2L5PA0A1B0GUS4 154 aa14.32□□□□□ -0.12
SPIDR-227ENST00000541342 Q8IYB0 196 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms