RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 RTBDNQ9BSG5 229 aaPredicted RBP8.53□□□□□ -1.04
TRAF1-202ENST00000540010 RPRMQ9NS64 109 aa8.53□□□□□ -1.04
TRAF1-202ENST00000540010 DOCK11Q5JSL3 2073 aa8.53□□□□□ -1.04
TRAF1-202ENST00000540010 CXorf65A6NEN9 183 aa8.53□□□□□ -1.04
TRAF1-202ENST00000540010 NUBP1P53384 320 aa8.53□□□□□ -1.04
TRAF1-202ENST00000540010 RIPPLY2Q5TAB7 128 aa8.53□□□□□ -1.04
TRAF1-202ENST00000540010 TRAT1Q6PIZ9 186 aa8.53□□□□□ -1.04
TRAF1-202ENST00000540010 GGACTQ9BVM4 153 aa8.53□□□□□ -1.04
TRAF1-202ENST00000540010 C5orf63A6NC05 138 aa8.53□□□□□ -1.04
TRAF1-202ENST00000540010 IL3RAP26951 378 aa8.53□□□□□ -1.04
TRAF1-202ENST00000540010 NTF4P34130 210 aa8.53□□□□□ -1.04
TRAF1-202ENST00000540010 LGALS4P56470 323 aa8.53□□□□□ -1.04
TRAF1-202ENST00000540010 B2MP61769 119 aa8.53□□□□□ -1.04
TRAF1-202ENST00000540010 TMEM187Q14656 261 aa8.53□□□□□ -1.04
TRAF1-202ENST00000540010 ZNF818PQ6ZRF7 136 aa8.53□□□□□ -1.04
TRAF1-202ENST00000540010 ZNF826PQ6ZT77 177 aa8.53□□□□□ -1.04
TRAF1-202ENST00000540010 OR4A4PQ8NGN8 299 aa8.53□□□□□ -1.04
TRAF1-202ENST00000540010 TBX15Q96SF7 602 aa8.53□□□□□ -1.04
TRAF1-202ENST00000540010 RNF122Q9H9V4 155 aa8.53□□□□□ -1.04
TRAF1-202ENST00000540010 CPAMD8Q8IZJ3 1885 aa8.53□□□□□ -1.04
TRAF1-202ENST00000540010 MED13Q9UHV7 2174 aa8.53□□□□□ -1.04
TRAF1-202ENST00000540010 CYB5R3P00387 301 aaPredicted RBP8.53□□□□□ -1.04
TRAF1-202ENST00000540010 MELTFP08582 738 aa8.53□□□□□ -1.04
TRAF1-202ENST00000540010 SOX8P57073 446 aa8.53□□□□□ -1.04
TRAF1-202ENST00000540010 BPIFB3P59826 476 aa8.53□□□□□ -1.04
TRAF1-202ENST00000540010 RANP62826 216 aaKnown RBP8.53□□□□□ -1.04
TRAF1-202ENST00000540010 FAM166AQ6J272 317 aa8.53□□□□□ -1.04
TRAF1-202ENST00000540010 Q6ZN92 141 aa8.53□□□□□ -1.04
TRAF1-202ENST00000540010 ELOVL1Q9BW60 279 aa8.53□□□□□ -1.04
TRAF1-202ENST00000540010 SMDT1Q9H4I9 107 aa8.53□□□□□ -1.04
TRAF1-202ENST00000540010 MYOZ1Q9NP98 299 aaPredicted RBP8.53□□□□□ -1.04
TRAF1-202ENST00000540010 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.52□□□□□ -1.04
TRAF1-202ENST00000540010 PGLYRP1O75594 196 aaPredicted RBP8.52□□□□□ -1.05
TRAF1-202ENST00000540010 HSPB1P04792 205 aaKnown RBP8.52□□□□□ -1.05
TRAF1-202ENST00000540010 APELAP0DMC3 54 aa8.52□□□□□ -1.05
TRAF1-202ENST00000540010 CDX1P47902 265 aaPredicted RBP8.52□□□□□ -1.05
TRAF1-202ENST00000540010 CEBPDP49716 269 aaPredicted RBP8.52□□□□□ -1.05
TRAF1-202ENST00000540010 FGF12P61328 243 aa8.52□□□□□ -1.05
TRAF1-202ENST00000540010 SERF2P84101 59 aa8.52□□□□□ -1.05
TRAF1-202ENST00000540010 OR5I1Q13606 314 aa8.52□□□□□ -1.05
TRAF1-202ENST00000540010 FGFRL1Q8N441 504 aa8.52□□□□□ -1.05
TRAF1-202ENST00000540010 PAQR4Q8N4S7 273 aaPredicted RBP8.52□□□□□ -1.05
TRAF1-202ENST00000540010 FDCSPQ8NFU4 85 aa8.52□□□□□ -1.05
TRAF1-202ENST00000540010 OR52L2PQ8NGH6 319 aa8.52□□□□□ -1.05
TRAF1-202ENST00000540010 MANBALQ9NQG1 85 aa8.52□□□□□ -1.05
TRAF1-202ENST00000540010 SLC45A2Q9UMX9 530 aa8.52□□□□□ -1.05
TRAF1-202ENST00000540010 CARHSP1Q9Y2V2 147 aaKnown RBP8.52□□□□□ -1.05
TRAF1-202ENST00000540010 RRP8O43159 456 aaKnown RBP8.52□□□□□ -1.05
TRAF1-202ENST00000540010 RPS23P62266 143 aaKnown RBP8.52□□□□□ -1.05
TRAF1-202ENST00000540010 RPL11P62913 178 aaKnown RBP8.52□□□□□ -1.05
TRAF1-202ENST00000540010 BIVMQ86UB2 503 aa8.52□□□□□ -1.05
TRAF1-202ENST00000540010 TGIF2LXQ8IUE1 241 aa8.52□□□□□ -1.05
TRAF1-202ENST00000540010 C11orf42Q8N5U0 333 aa8.52□□□□□ -1.05
TRAF1-202ENST00000540010 CPEB3Q8NE35 698 aaKnown RBP8.52□□□□□ -1.05
TRAF1-202ENST00000540010 OR4C5Q8NGB2 326 aa8.52□□□□□ -1.05
TRAF1-202ENST00000540010 CCL17Q92583 94 aa8.52□□□□□ -1.05
TRAF1-202ENST00000540010 GSN-AS1Q9NRJ2 163 aa8.52□□□□□ -1.05
TRAF1-202ENST00000540010 LYRM2Q9NU23 88 aaPredicted RBP8.52□□□□□ -1.05
TRAF1-202ENST00000540010 GATCO43716 136 aaKnown RBP8.52□□□□□ -1.05
TRAF1-202ENST00000540010 SLC25A5P05141 298 aaKnown RBP8.52□□□□□ -1.05
TRAF1-202ENST00000540010 CLEC3BP05452 202 aa8.52□□□□□ -1.05
TRAF1-202ENST00000540010 ZNF735P0CB33 412 aa8.52□□□□□ -1.05
TRAF1-202ENST00000540010 UBE2L3P68036 154 aaKnown RBP8.52□□□□□ -1.05
TRAF1-202ENST00000540010 MRPS11P82912 194 aaKnown RBP8.52□□□□□ -1.05
TRAF1-202ENST00000540010 IGFBP7Q16270 282 aa8.52□□□□□ -1.05
TRAF1-202ENST00000540010 SMIM15Q7Z3B0 74 aa8.52□□□□□ -1.05
TRAF1-202ENST00000540010 S100A7AQ86SG5 101 aa8.52□□□□□ -1.05
TRAF1-202ENST00000540010 MDP1Q86V88 176 aa8.52□□□□□ -1.05
TRAF1-202ENST00000540010 EIF4E3Q8N5X7 224 aaKnown RBP8.52□□□□□ -1.05
TRAF1-202ENST00000540010 MDS2Q8NDY4 140 aa8.52□□□□□ -1.05
TRAF1-202ENST00000540010 OR5AU1Q8NGC0 362 aa8.52□□□□□ -1.05
TRAF1-202ENST00000540010 ANAPC16Q96DE5 110 aa8.52□□□□□ -1.05
TRAF1-202ENST00000540010 MISP3Q96FF7 219 aa8.52□□□□□ -1.05
TRAF1-202ENST00000540010 RBKSQ9H477 322 aa8.52□□□□□ -1.05
TRAF1-202ENST00000540010 ZNF552Q9H707 407 aaPredicted RBP8.52□□□□□ -1.05
TRAF1-202ENST00000540010 CBY1Q9Y3M2 126 aa8.52□□□□□ -1.05
TRAF1-202ENST00000540010 PTTG1IPP53801 180 aa8.51□□□□□ -1.05
TRAF1-202ENST00000540010 DTX1Q86Y01 620 aa8.51□□□□□ -1.05
TRAF1-202ENST00000540010 CTSSP25774 331 aa8.51□□□□□ -1.05
TRAF1-202ENST00000540010 RPEL1Q2QD12 228 aa8.51□□□□□ -1.05
TRAF1-202ENST00000540010 CEACAM21Q3KPI0 293 aa8.51□□□□□ -1.05
TRAF1-202ENST00000540010 FOXL2NBQ6ZUU3 175 aa8.51□□□□□ -1.05
TRAF1-202ENST00000540010 SELENOHQ8IZQ5 122 aaKnown RBP8.51□□□□□ -1.05
TRAF1-202ENST00000540010 TAF15Q92804 592 aaKnown RBP eCLIP8.51□□□□□ -1.05
TRAF1-202ENST00000540010 RAB24Q969Q5 203 aa8.51□□□□□ -1.05
TRAF1-202ENST00000540010 LYZL4Q96KX0 146 aa8.51□□□□□ -1.05
TRAF1-202ENST00000540010 TRAV38-1A0A0B4J264 116 aa8.51□□□□□ -1.05
TRAF1-202ENST00000540010 TRAV17A0A0B4J275 112 aa8.51□□□□□ -1.05
TRAF1-202ENST00000540010 LOC390937A0A1W2PQ73 354 aa8.51□□□□□ -1.05
TRAF1-202ENST00000540010 IGSF23A1L1A6 192 aa8.51□□□□□ -1.05
TRAF1-202ENST00000540010 E9PLN8 166 aa8.51□□□□□ -1.05
TRAF1-202ENST00000540010 SYNGR3O43761 229 aa8.51□□□□□ -1.05
TRAF1-202ENST00000540010 DDTP30046 118 aa8.51□□□□□ -1.05
TRAF1-202ENST00000540010 HLA-DRB5Q30154 266 aa8.51□□□□□ -1.05
TRAF1-202ENST00000540010 MOB3BQ86TA1 216 aa8.51□□□□□ -1.05
TRAF1-202ENST00000540010 CALHM1Q8IU99 346 aa8.51□□□□□ -1.05
TRAF1-202ENST00000540010 OR1L4Q8NGR5 311 aa8.51□□□□□ -1.05
TRAF1-202ENST00000540010 TMEM45BQ96B21 275 aa8.51□□□□□ -1.05
TRAF1-202ENST00000540010 STARD4Q96DR4 205 aa8.51□□□□□ -1.05
TRAF1-202ENST00000540010 BOD1Q96IK1 185 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms