RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 VSTM2AQ8TAG5 236 aa10.53□□□□□ -0.72
USP3-203ENST00000538686 LINC00470Q9BZP3 86 aa10.53□□□□□ -0.72
USP3-203ENST00000538686 FGF21Q9NSA1 209 aa10.53□□□□□ -0.72
USP3-203ENST00000538686 POLR2AP24928 1970 aaKnown RBP10.52□□□□□ -0.72
USP3-203ENST00000538686 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.52□□□□□ -0.73
USP3-203ENST00000538686 BLACEA4D250 179 aa10.52□□□□□ -0.73
USP3-203ENST00000538686 ANKRD30BLA7E2S9 258 aa10.52□□□□□ -0.73
USP3-203ENST00000538686 CD300LBA8K4G0 201 aa10.52□□□□□ -0.73
USP3-203ENST00000538686 VSTM5A8MXK1 200 aa10.52□□□□□ -0.73
USP3-203ENST00000538686 FAM90A26D6RGX4 464 aa10.52□□□□□ -0.73
USP3-203ENST00000538686 H3BMH7 237 aa10.52□□□□□ -0.73
USP3-203ENST00000538686 TNFSF14O43557 240 aa10.52□□□□□ -0.73
USP3-203ENST00000538686 PGCP20142 388 aa10.52□□□□□ -0.73
USP3-203ENST00000538686 TGFBR3Q03167 851 aa10.52□□□□□ -0.73
USP3-203ENST00000538686 TRIP6Q15654 476 aaKnown RBP10.52□□□□□ -0.73
USP3-203ENST00000538686 CXCL17Q6UXB2 119 aa10.52□□□□□ -0.73
USP3-203ENST00000538686 GAPTQ8N292 157 aa10.52□□□□□ -0.73
USP3-203ENST00000538686 OR2Z1Q8NG97 314 aa10.52□□□□□ -0.73
USP3-203ENST00000538686 OR10AG1Q8NH19 301 aa10.52□□□□□ -0.73
USP3-203ENST00000538686 DUSP23Q9BVJ7 150 aa10.52□□□□□ -0.73
USP3-203ENST00000538686 THYN1Q9P016 225 aa10.52□□□□□ -0.73
USP3-203ENST00000538686 ARL2-SNX15V9GYD0 113 aa10.52□□□□□ -0.73
USP3-203ENST00000538686 DHRS3O75911 302 aa10.51□□□□□ -0.73
USP3-203ENST00000538686 IGLV3-1P01715 115 aa10.51□□□□□ -0.73
USP3-203ENST00000538686 APCSP02743 223 aa10.51□□□□□ -0.73
USP3-203ENST00000538686 GATA2P23769 480 aaPredicted RBP10.51□□□□□ -0.73
USP3-203ENST00000538686 HTR1DP28221 377 aa10.51□□□□□ -0.73
USP3-203ENST00000538686 SSTR5P35346 364 aa10.51□□□□□ -0.73
USP3-203ENST00000538686 CYB561P49447 251 aa10.51□□□□□ -0.73
USP3-203ENST00000538686 NOGQ13253 232 aa10.51□□□□□ -0.73
USP3-203ENST00000538686 KLF5Q13887 457 aaPredicted RBP10.51□□□□□ -0.73
USP3-203ENST00000538686 LTC4SQ16873 150 aa10.51□□□□□ -0.73
USP3-203ENST00000538686 TMEM215Q68D42 235 aa10.51□□□□□ -0.73
USP3-203ENST00000538686 CCDC144NLQ6NUI1 221 aa10.51□□□□□ -0.73
USP3-203ENST00000538686 FOXI2Q6ZQN5 318 aa10.51□□□□□ -0.73
USP3-203ENST00000538686 SAP30LQ9HAJ7 183 aa10.51□□□□□ -0.73
USP3-203ENST00000538686 RBMXL2O75526 392 aaKnown RBP10.51□□□□□ -0.73
USP3-203ENST00000538686 CRYAAP02489 173 aa10.51□□□□□ -0.73
USP3-203ENST00000538686 USF1P22415 310 aaPredicted RBP10.51□□□□□ -0.73
USP3-203ENST00000538686 ATP5G3P48201 142 aa10.51□□□□□ -0.73
USP3-203ENST00000538686 KIR2DS3Q14952 304 aa10.51□□□□□ -0.73
USP3-203ENST00000538686 GABRA6Q16445 453 aa10.51□□□□□ -0.73
USP3-203ENST00000538686 NNATQ16517 81 aa10.51□□□□□ -0.73
USP3-203ENST00000538686 ZNF818PQ6ZRF7 136 aa10.51□□□□□ -0.73
USP3-203ENST00000538686 C16orf52Q8NHV5 167 aa10.51□□□□□ -0.73
USP3-203ENST00000538686 MRPL16Q9NX20 251 aaKnown RBP10.51□□□□□ -0.73
USP3-203ENST00000538686 COPS7AQ9UBW8 275 aa10.51□□□□□ -0.73
USP3-203ENST00000538686 TRBV20OR9-2A0A075B6H5 130 aa10.5□□□□□ -0.73
USP3-203ENST00000538686 TMED7-TICAM2A0A0A6YYA0 188 aa10.5□□□□□ -0.73
USP3-203ENST00000538686 DUSP11O75319 330 aaKnown RBP10.5□□□□□ -0.73
USP3-203ENST00000538686 RHBDL1O75783 438 aa10.5□□□□□ -0.73
USP3-203ENST00000538686 UTS2O95399 124 aa10.5□□□□□ -0.73
USP3-203ENST00000538686 IAPPP10997 89 aa10.5□□□□□ -0.73
USP3-203ENST00000538686 ADH5P11766 374 aa10.5□□□□□ -0.73
USP3-203ENST00000538686 MALLQ13021 153 aa10.5□□□□□ -0.73
USP3-203ENST00000538686 TMEM97Q5BJF2 176 aa10.5□□□□□ -0.73
USP3-203ENST00000538686 TMEM14EPQ6UXP3 125 aa10.5□□□□□ -0.73
USP3-203ENST00000538686 Q6ZSR3 168 aa10.5□□□□□ -0.73
USP3-203ENST00000538686 Q6ZSR6 202 aa10.5□□□□□ -0.73
USP3-203ENST00000538686 OR4A5Q8NH83 315 aa10.5□□□□□ -0.73
USP3-203ENST00000538686 RDH5Q92781 318 aa10.5□□□□□ -0.73
USP3-203ENST00000538686 IRF7Q92985 503 aa10.5□□□□□ -0.73
USP3-203ENST00000538686 SPSB4Q96A44 273 aa10.5□□□□□ -0.73
USP3-203ENST00000538686 DGAT2Q96PD7 388 aa10.5□□□□□ -0.73
USP3-203ENST00000538686 V9GYV3 84 aa10.5□□□□□ -0.73
USP3-203ENST00000538686 GOLGA4Q13439 2230 aaKnown RBP10.5□□□□□ -0.73
USP3-203ENST00000538686 A0A0G2JLM5 398 aa10.49□□□□□ -0.73
USP3-203ENST00000538686 PGPEP1LA6NFU8 196 aa10.49□□□□□ -0.73
USP3-203ENST00000538686 NPIPA3F8WFD2 350 aa10.49□□□□□ -0.73
USP3-203ENST00000538686 J3KRW8 73 aa10.49□□□□□ -0.73
USP3-203ENST00000538686 SLC17A3O00476 420 aa10.49□□□□□ -0.73
USP3-203ENST00000538686 HIST1H1EP10412 219 aaKnown RBP10.49□□□□□ -0.73
USP3-203ENST00000538686 F2RP25116 425 aa10.49□□□□□ -0.73
USP3-203ENST00000538686 GNG4P50150 75 aa10.49□□□□□ -0.73
USP3-203ENST00000538686 RPL24P83731 157 aaKnown RBP10.49□□□□□ -0.73
USP3-203ENST00000538686 FUT7Q11130 342 aa10.49□□□□□ -0.73
USP3-203ENST00000538686 HNRNPA1L2Q32P51 320 aaKnown RBP10.49□□□□□ -0.73
USP3-203ENST00000538686 CDCP2Q5VXM1 449 aa10.49□□□□□ -0.73
USP3-203ENST00000538686 PLCXD3Q63HM9 321 aa10.49□□□□□ -0.73
USP3-203ENST00000538686 BPIFA4PQ86YQ2 179 aa10.49□□□□□ -0.73
USP3-203ENST00000538686 TMEFF1Q8IYR6 380 aa10.49□□□□□ -0.73
USP3-203ENST00000538686 DPF1Q92782 380 aa10.49□□□□□ -0.73
USP3-203ENST00000538686 ST6GALNAC6Q969X2 333 aa10.49□□□□□ -0.73
USP3-203ENST00000538686 PHF7Q9BWX1 381 aaPredicted RBP10.49□□□□□ -0.73
USP3-203ENST00000538686 SPCS1Q9Y6A9 102 aa10.49□□□□□ -0.73
USP3-203ENST00000538686 PDCD6O75340 191 aa10.49□□□□□ -0.73
USP3-203ENST00000538686 ATXN8OSP0DMR3 200 aa10.49□□□□□ -0.73
USP3-203ENST00000538686 EGR1P18146 543 aa10.49□□□□□ -0.73
USP3-203ENST00000538686 TNXAQ16473 311 aa10.49□□□□□ -0.73
USP3-203ENST00000538686 KIAA1644Q3SXP7 199 aa10.49□□□□□ -0.73
USP3-203ENST00000538686 SPANXN5Q5MJ07 72 aa10.49□□□□□ -0.73
USP3-203ENST00000538686 TMEM45BQ96B21 275 aa10.49□□□□□ -0.73
USP3-203ENST00000538686 BMFQ96LC9 184 aa10.49□□□□□ -0.73
USP3-203ENST00000538686 CACNG5Q9UF02 275 aa10.49□□□□□ -0.73
USP3-203ENST00000538686 TSSC4Q9Y5U2 329 aaPredicted RBP10.49□□□□□ -0.73
USP3-203ENST00000538686 GOLGB1Q14789 3259 aaKnown RBP10.48□□□□□ -0.73
USP3-203ENST00000538686 DOCK11Q5JSL3 2073 aa10.48□□□□□ -0.73
USP3-203ENST00000538686 IGKV1D-43A0A0B4J1Z2 117 aa10.48□□□□□ -0.73
USP3-203ENST00000538686 TEX48A0A1B0GUV7 120 aa10.48□□□□□ -0.73
USP3-203ENST00000538686 SP9P0CG40 484 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms