RNA–Protein interactions for RNA: ENST00000532602.1

PCDHA9-202, Transcript of protocadherin alpha 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA9, Length 6,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9-202ENST00000532602 PITX3O75364 302 aa12.68□□□□□ -0.38
PCDHA9-202ENST00000532602 RAB9AP51151 201 aa12.68□□□□□ -0.38
PCDHA9-202ENST00000532602 RBM38Q9H0Z9 239 aaKnown RBP12.68□□□□□ -0.38
PCDHA9-202ENST00000532602 AP5S1Q9NUS5 200 aa12.68□□□□□ -0.38
PCDHA9-202ENST00000532602 ABCA7Q8IZY2 2146 aa12.68□□□□□ -0.38
PCDHA9-202ENST00000532602 IGLV3-19P01714 112 aa12.68□□□□□ -0.38
PCDHA9-202ENST00000532602 GLRXP35754 106 aa12.68□□□□□ -0.38
PCDHA9-202ENST00000532602 SLC25A53Q5H9E4 307 aa12.68□□□□□ -0.38
PCDHA9-202ENST00000532602 TXNDC17Q9BRA2 123 aa12.68□□□□□ -0.38
PCDHA9-202ENST00000532602 DLL3Q9NYJ7 618 aa12.68□□□□□ -0.38
PCDHA9-202ENST00000532602 EGR4Q05215 589 aa12.68□□□□□ -0.38
PCDHA9-202ENST00000532602 HLA-DRB5Q30154 266 aa12.68□□□□□ -0.38
PCDHA9-202ENST00000532602 AICDAQ9GZX7 198 aa12.68□□□□□ -0.38
PCDHA9-202ENST00000532602 NPIPB6E9PJ23 425 aa12.68□□□□□ -0.38
PCDHA9-202ENST00000532602 RELBQ01201 579 aa12.68□□□□□ -0.38
PCDHA9-202ENST00000532602 DCTN5Q9BTE1 182 aa12.68□□□□□ -0.38
PCDHA9-202ENST00000532602 DCAF16Q9NXF7 216 aa12.68□□□□□ -0.38
PCDHA9-202ENST00000532602 HSF4Q9ULV5 492 aa12.68□□□□□ -0.38
PCDHA9-202ENST00000532602 C1orf100Q5SVJ3 147 aa12.67□□□□□ -0.38
PCDHA9-202ENST00000532602 SIRT7Q9NRC8 400 aa12.67□□□□□ -0.38
PCDHA9-202ENST00000532602 ERVS71-1P61550 626 aa12.67□□□□□ -0.38
PCDHA9-202ENST00000532602 DHRS11Q6UWP2 260 aa12.67□□□□□ -0.38
PCDHA9-202ENST00000532602 LDLRAD3Q86YD5 345 aa12.67□□□□□ -0.38
PCDHA9-202ENST00000532602 ZNF738Q8NE65 137 aa12.67□□□□□ -0.38
PCDHA9-202ENST00000532602 MYOZ3Q8TDC0 251 aa12.67□□□□□ -0.38
PCDHA9-202ENST00000532602 TMEM45BQ96B21 275 aa12.67□□□□□ -0.38
PCDHA9-202ENST00000532602 NEURL2Q9BR09 285 aa12.67□□□□□ -0.38
PCDHA9-202ENST00000532602 WNT5BQ9H1J7 359 aa12.67□□□□□ -0.38
PCDHA9-202ENST00000532602 ZNF703Q9H7S9 590 aaPredicted RBP12.67□□□□□ -0.38
PCDHA9-202ENST00000532602 S1PR2O95136 353 aa12.67□□□□□ -0.38
PCDHA9-202ENST00000532602 LINC00869P0C866 280 aa12.67□□□□□ -0.38
PCDHA9-202ENST00000532602 MUC1P15941 1255 aaPredicted RBP12.67□□□□□ -0.38
PCDHA9-202ENST00000532602 ZNF430Q9H8G1 570 aaPredicted RBP12.67□□□□□ -0.38
PCDHA9-202ENST00000532602 CXCL3P19876 107 aa12.67□□□□□ -0.38
PCDHA9-202ENST00000532602 LRP11Q86VZ4 500 aa12.67□□□□□ -0.38
PCDHA9-202ENST00000532602 FADS6Q8N9I5 356 aa12.67□□□□□ -0.38
PCDHA9-202ENST00000532602 NEU4Q8WWR8 484 aaPredicted RBP12.67□□□□□ -0.38
PCDHA9-202ENST00000532602 TMEM222Q9H0R3 208 aa12.67□□□□□ -0.38
PCDHA9-202ENST00000532602 CRXO43186 299 aaPredicted RBP12.67□□□□□ -0.38
PCDHA9-202ENST00000532602 SLC25A17O43808 307 aa12.67□□□□□ -0.38
PCDHA9-202ENST00000532602 UMODP07911 640 aa12.67□□□□□ -0.38
PCDHA9-202ENST00000532602 RD3LP0DJH9 198 aa12.67□□□□□ -0.38
PCDHA9-202ENST00000532602 C10orf128Q5T292 105 aa12.67□□□□□ -0.38
PCDHA9-202ENST00000532602 POM121Q96HA1 1249 aa12.67□□□□□ -0.38
PCDHA9-202ENST00000532602 TNFSF18Q9UNG2 199 aa12.67□□□□□ -0.38
PCDHA9-202ENST00000532602 KCNK7Q9Y2U2 307 aa12.67□□□□□ -0.38
PCDHA9-202ENST00000532602 DSPPQ9NZW4 1301 aa12.67□□□□□ -0.38
PCDHA9-202ENST00000532602 PF4P02776 101 aa12.66□□□□□ -0.38
PCDHA9-202ENST00000532602 HIST1H1BP16401 226 aaKnown RBP12.66□□□□□ -0.38
PCDHA9-202ENST00000532602 LY6DQ14210 128 aa12.66□□□□□ -0.38
PCDHA9-202ENST00000532602 OR2D3Q8NGH3 330 aa12.66□□□□□ -0.38
PCDHA9-202ENST00000532602 OR4C13Q8NGP0 309 aa12.66□□□□□ -0.38
PCDHA9-202ENST00000532602 MAP1LC3CQ9BXW4 147 aa12.66□□□□□ -0.38
PCDHA9-202ENST00000532602 PXMP4Q9Y6I8 212 aa12.66□□□□□ -0.38
PCDHA9-202ENST00000532602 PMS2P11Q13670 270 aa12.66□□□□□ -0.38
PCDHA9-202ENST00000532602 LGALSLQ3ZCW2 172 aaPredicted RBP12.66□□□□□ -0.38
PCDHA9-202ENST00000532602 OR10D4PQ8NGN7 298 aa12.66□□□□□ -0.38
PCDHA9-202ENST00000532602 MESP1Q9BRJ9 268 aa12.66□□□□□ -0.38
PCDHA9-202ENST00000532602 ATP6V0CP27449 155 aa12.66□□□□□ -0.38
PCDHA9-202ENST00000532602 ATP5G2Q06055 141 aa12.66□□□□□ -0.38
PCDHA9-202ENST00000532602 HCP5Q6MZN7 132 aa12.66□□□□□ -0.38
PCDHA9-202ENST00000532602 MRPL54Q6P161 138 aaKnown RBP12.66□□□□□ -0.38
PCDHA9-202ENST00000532602 CENPVQ7Z7K6 275 aaPredicted RBP12.66□□□□□ -0.38
PCDHA9-202ENST00000532602 LRRC75AQ8NAA5 344 aa12.66□□□□□ -0.38
PCDHA9-202ENST00000532602 CCDC88CQ9P219 2028 aa12.66□□□□□ -0.38
PCDHA9-202ENST00000532602 FAM90A26D6RGX4 464 aa12.66□□□□□ -0.38
PCDHA9-202ENST00000532602 H1FOOQ8IZA3 346 aaPredicted RBP12.66□□□□□ -0.38
PCDHA9-202ENST00000532602 ELF5Q9UKW6 265 aaPredicted RBP12.66□□□□□ -0.38
PCDHA9-202ENST00000532602 MAS1LP35410 378 aa12.66□□□□□ -0.38
PCDHA9-202ENST00000532602 HSPE1P61604 102 aaKnown RBP12.66□□□□□ -0.38
PCDHA9-202ENST00000532602 CD300CQ08708 224 aa12.66□□□□□ -0.38
PCDHA9-202ENST00000532602 CXorf66Q5JRM2 361 aaPredicted RBP12.66□□□□□ -0.38
PCDHA9-202ENST00000532602 PRNTQ86SH4 94 aa12.66□□□□□ -0.38
PCDHA9-202ENST00000532602 VPS25Q9BRG1 176 aa12.66□□□□□ -0.38
PCDHA9-202ENST00000532602 M0R143 59 aa12.65□□□□□ -0.38
PCDHA9-202ENST00000532602 ZNF345Q14585 488 aa12.65□□□□□ -0.38
PCDHA9-202ENST00000532602 C1orf162Q8NEQ5 155 aaPredicted RBP12.65□□□□□ -0.38
PCDHA9-202ENST00000532602 TMSB15BA0A087X1C1 80 aa12.65□□□□□ -0.38
PCDHA9-202ENST00000532602 A8MWL6 223 aa12.65□□□□□ -0.38
PCDHA9-202ENST00000532602 TSPOP30536 169 aa12.65□□□□□ -0.38
PCDHA9-202ENST00000532602 CLDN18P56856 261 aa12.65□□□□□ -0.38
PCDHA9-202ENST00000532602 RNF151Q2KHN1 245 aa12.65□□□□□ -0.38
PCDHA9-202ENST00000532602 PQLC2Q6ZP29 291 aa12.65□□□□□ -0.38
PCDHA9-202ENST00000532602 TMEM54Q969K7 222 aa12.65□□□□□ -0.38
PCDHA9-202ENST00000532602 LSM10Q969L4 123 aaKnown RBP12.65□□□□□ -0.38
PCDHA9-202ENST00000532602 FAM206AQ9NX38 181 aa12.65□□□□□ -0.38
PCDHA9-202ENST00000532602 HOXA6P31267 233 aa12.65□□□□□ -0.38
PCDHA9-202ENST00000532602 PPOXP50336 477 aa12.65□□□□□ -0.38
PCDHA9-202ENST00000532602 SLC35E4Q6ICL7 350 aa12.65□□□□□ -0.38
PCDHA9-202ENST00000532602 STPG2Q8N412 459 aa12.65□□□□□ -0.38
PCDHA9-202ENST00000532602 FAM57AQ8TBR7 257 aa12.65□□□□□ -0.38
PCDHA9-202ENST00000532602 SCMH1Q96GD3 660 aa12.65□□□□□ -0.38
PCDHA9-202ENST00000532602 TMEM189A5PLL7 270 aa12.65□□□□□ -0.38
PCDHA9-202ENST00000532602 KLF7O75840 302 aaPredicted RBP12.65□□□□□ -0.38
PCDHA9-202ENST00000532602 ZNF137PP52743 207 aa12.65□□□□□ -0.38
PCDHA9-202ENST00000532602 AWAT1Q58HT5 328 aa12.65□□□□□ -0.38
PCDHA9-202ENST00000532602 RNFT1Q5M7Z0 435 aa12.65□□□□□ -0.38
PCDHA9-202ENST00000532602 LOC390937A0A1W2PQ73 354 aa12.64□□□□□ -0.39
PCDHA9-202ENST00000532602 ACAA1P09110 424 aaPredicted RBP12.64□□□□□ -0.39
PCDHA9-202ENST00000532602 NPBWR2P48146 333 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms