RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 SOCS1O15524 211 aa8.72□□□□□ -1.01
VPS28-214ENST00000531032 CA2P00918 260 aa8.72□□□□□ -1.01
VPS28-214ENST00000531032 SNRPBP14678 240 aaKnown RBP8.72□□□□□ -1.01
VPS28-214ENST00000531032 CD40LGP29965 261 aa8.72□□□□□ -1.01
VPS28-214ENST00000531032 CEACAM6P40199 344 aa8.72□□□□□ -1.01
VPS28-214ENST00000531032 CLDN12P56749 244 aa8.72□□□□□ -1.01
VPS28-214ENST00000531032 HES5Q5TA89 166 aa8.72□□□□□ -1.01
VPS28-214ENST00000531032 PDPNQ86YL7 162 aa8.72□□□□□ -1.01
VPS28-214ENST00000531032 ZNF383Q8NA42 475 aa8.72□□□□□ -1.01
VPS28-214ENST00000531032 DRAXINQ8NBI3 349 aaPredicted RBP8.72□□□□□ -1.01
VPS28-214ENST00000531032 LFNGQ8NES3 379 aa8.72□□□□□ -1.01
VPS28-214ENST00000531032 FAM3DQ96BQ1 224 aa8.72□□□□□ -1.01
VPS28-214ENST00000531032 MS4A10Q96PG2 267 aa8.72□□□□□ -1.01
VPS28-214ENST00000531032 OR4C12Q96R67 309 aa8.72□□□□□ -1.01
VPS28-214ENST00000531032 CLCC1Q96S66 551 aa8.72□□□□□ -1.01
VPS28-214ENST00000531032 TSNAXQ99598 290 aaKnown RBP8.72□□□□□ -1.01
VPS28-214ENST00000531032 Q9N2K0 584 aa8.72□□□□□ -1.01
VPS28-214ENST00000531032 C12orf4Q9NQ89 552 aa8.72□□□□□ -1.01
VPS28-214ENST00000531032 NDUFB11Q9NX14 153 aa8.72□□□□□ -1.01
VPS28-214ENST00000531032 HSF4Q9ULV5 492 aa8.72□□□□□ -1.01
VPS28-214ENST00000531032 TENM2Q9NT68 2774 aa8.71□□□□□ -1.01
VPS28-214ENST00000531032 H3BUA1 57 aa8.71□□□□□ -1.02
VPS28-214ENST00000531032 HSPA12AO43301 675 aa8.71□□□□□ -1.02
VPS28-214ENST00000531032 MRPS14O60783 128 aaKnown RBP8.71□□□□□ -1.02
VPS28-214ENST00000531032 TRGV3P03979 118 aa8.71□□□□□ -1.02
VPS28-214ENST00000531032 SCTP09683 121 aa8.71□□□□□ -1.02
VPS28-214ENST00000531032 VEGFCP49767 419 aa8.71□□□□□ -1.02
VPS28-214ENST00000531032 SSX1Q16384 188 aa8.71□□□□□ -1.02
VPS28-214ENST00000531032 OR56B1Q8NGI3 324 aa8.71□□□□□ -1.02
VPS28-214ENST00000531032 FCGR1BQ92637 280 aa8.71□□□□□ -1.02
VPS28-214ENST00000531032 CITED4Q96RK1 184 aa8.71□□□□□ -1.02
VPS28-214ENST00000531032 GFI1Q99684 422 aa8.71□□□□□ -1.02
VPS28-214ENST00000531032 CMSS1Q9BQ75 279 aaKnown RBP8.71□□□□□ -1.02
VPS28-214ENST00000531032 TM2D3Q9BRN9 247 aa8.71□□□□□ -1.02
VPS28-214ENST00000531032 ELOVL1Q9BW60 279 aa8.71□□□□□ -1.02
VPS28-214ENST00000531032 ZMAT4Q9H898 229 aa8.71□□□□□ -1.02
VPS28-214ENST00000531032 STUB1Q9UNE7 303 aa8.71□□□□□ -1.02
VPS28-214ENST00000531032 IGKV1-6A0A0C4DH72 117 aa8.7□□□□□ -1.02
VPS28-214ENST00000531032 A8MZ25 164 aa8.7□□□□□ -1.02
VPS28-214ENST00000531032 DENRO43583 198 aaKnown RBP8.7□□□□□ -1.02
VPS28-214ENST00000531032 IGLV1-51P01701 117 aa8.7□□□□□ -1.02
VPS28-214ENST00000531032 APOA2P02652 100 aa8.7□□□□□ -1.02
VPS28-214ENST00000531032 IGHV4-30-4P0DP06 118 aa8.7□□□□□ -1.02
VPS28-214ENST00000531032 LYL1P12980 280 aa8.7□□□□□ -1.02
VPS28-214ENST00000531032 RAB3BP20337 219 aa8.7□□□□□ -1.02
VPS28-214ENST00000531032 ZP3P21754 424 aa8.7□□□□□ -1.02
VPS28-214ENST00000531032 GADD45AP24522 165 aa8.7□□□□□ -1.02
VPS28-214ENST00000531032 TMEM50BP56557 158 aa8.7□□□□□ -1.02
VPS28-214ENST00000531032 LINC00205P59089 165 aa8.7□□□□□ -1.02
VPS28-214ENST00000531032 RPS16P62249 146 aaKnown RBP8.7□□□□□ -1.02
VPS28-214ENST00000531032 SSBP2P81877 361 aaPredicted RBP8.7□□□□□ -1.02
VPS28-214ENST00000531032 FXYD3Q14802 87 aa8.7□□□□□ -1.02
VPS28-214ENST00000531032 SRSF7Q16629 238 aaKnown RBP eCLIP8.7□□□□□ -1.02
VPS28-214ENST00000531032 HAPLN4Q86UW8 402 aa8.7□□□□□ -1.02
VPS28-214ENST00000531032 Q8N1Y9 231 aa8.7□□□□□ -1.02
VPS28-214ENST00000531032 POC5Q8NA72 575 aa8.7□□□□□ -1.02
VPS28-214ENST00000531032 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.7□□□□□ -1.02
VPS28-214ENST00000531032 GRPEL2Q8TAA5 225 aa8.7□□□□□ -1.02
VPS28-214ENST00000531032 ARHGAP5-AS1Q96IT6 56 aa8.7□□□□□ -1.02
VPS28-214ENST00000531032 ZNF221Q9UK13 617 aa8.7□□□□□ -1.02
VPS28-214ENST00000531032 TRAV1-2A0A0B4J238 106 aa8.69□□□□□ -1.02
VPS28-214ENST00000531032 TMEM272A0A1B0GTI8 110 aa8.69□□□□□ -1.02
VPS28-214ENST00000531032 SLC25A17O43808 307 aa8.69□□□□□ -1.02
VPS28-214ENST00000531032 BRI3O95415 125 aa8.69□□□□□ -1.02
VPS28-214ENST00000531032 IGLV2-23P01705 113 aa8.69□□□□□ -1.02
VPS28-214ENST00000531032 CD3GP09693 182 aa8.69□□□□□ -1.02
VPS28-214ENST00000531032 OR10A3P58181 314 aa8.69□□□□□ -1.02
VPS28-214ENST00000531032 MOGAT2Q3SYC2 334 aa8.69□□□□□ -1.02
VPS28-214ENST00000531032 PLAC9Q5JTB6 97 aa8.69□□□□□ -1.02
VPS28-214ENST00000531032 C22orf42Q6IC83 251 aa8.69□□□□□ -1.02
VPS28-214ENST00000531032 PECRQ9BY49 303 aa8.69□□□□□ -1.02
VPS28-214ENST00000531032 YTHDF1Q9BYJ9 559 aaKnown RBP8.69□□□□□ -1.02
VPS28-214ENST00000531032 RANGRFQ9HD47 186 aaPredicted RBP8.69□□□□□ -1.02
VPS28-214ENST00000531032 C19orf73Q9NVV2 129 aa8.69□□□□□ -1.02
VPS28-214ENST00000531032 RDH8Q9NYR8 311 aa8.69□□□□□ -1.02
VPS28-214ENST00000531032 RAB22AQ9UL26 194 aa8.69□□□□□ -1.02
VPS28-214ENST00000531032 RYR2Q92736 4967 aa8.68□□□□□ -1.02
VPS28-214ENST00000531032 A0A075B6Q4 140 aa8.68□□□□□ -1.02
VPS28-214ENST00000531032 A0A0G2JLM5 398 aa8.68□□□□□ -1.02
VPS28-214ENST00000531032 C13orf42A0A1B0GVH6 325 aa8.68□□□□□ -1.02
VPS28-214ENST00000531032 TRDV1A0A1B0GX56 115 aa8.68□□□□□ -1.02
VPS28-214ENST00000531032 IFITM5A6NNB3 132 aa8.68□□□□□ -1.02
VPS28-214ENST00000531032 TRDCB7Z8K6 153 aa8.68□□□□□ -1.02
VPS28-214ENST00000531032 M0R1X1 148 aa8.68□□□□□ -1.02
VPS28-214ENST00000531032 LDLRAD4O15165 306 aa8.68□□□□□ -1.02
VPS28-214ENST00000531032 CRYGBP07316 175 aa8.68□□□□□ -1.02
VPS28-214ENST00000531032 LGALS7P47929 136 aa8.68□□□□□ -1.02
VPS28-214ENST00000531032 SERPINB10P48595 397 aa8.68□□□□□ -1.02
VPS28-214ENST00000531032 KLF5Q13887 457 aaPredicted RBP8.68□□□□□ -1.02
VPS28-214ENST00000531032 C2orf76Q3KRA6 126 aa8.68□□□□□ -1.02
VPS28-214ENST00000531032 UBE2UQ5VVX9 321 aa8.68□□□□□ -1.02
VPS28-214ENST00000531032 ANKRD13BQ86YJ7 626 aa8.68□□□□□ -1.02
VPS28-214ENST00000531032 OR4A4PQ8NGN8 299 aa8.68□□□□□ -1.02
VPS28-214ENST00000531032 RAB3CQ96E17 227 aa8.68□□□□□ -1.02
VPS28-214ENST00000531032 TMEM68Q96MH6 324 aa8.68□□□□□ -1.02
VPS28-214ENST00000531032 RSRP1Q9BUV0 290 aa8.68□□□□□ -1.02
VPS28-214ENST00000531032 ZNF355PQ9NSJ1 428 aa8.68□□□□□ -1.02
VPS28-214ENST00000531032 SLC35D1Q9NTN3 355 aa8.68□□□□□ -1.02
VPS28-214ENST00000531032 SSR3Q9UNL2 185 aa8.68□□□□□ -1.02
VPS28-214ENST00000531032 CSMD3Q7Z407 3707 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms