RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 A8MV72 311 aaPredicted RBP6□□□□□ -1.45
CD44-228ENST00000528455 LEUTXA8MZ59 168 aa6□□□□□ -1.45
CD44-228ENST00000528455 LY6LH3BQJ8 138 aa6□□□□□ -1.45
CD44-228ENST00000528455 BUB1B-PAK6H3BSN5 160 aa6□□□□□ -1.45
CD44-228ENST00000528455 GPR31O00270 319 aa6□□□□□ -1.45
CD44-228ENST00000528455 PROP1O75360 226 aa6□□□□□ -1.45
CD44-228ENST00000528455 B3GALNT1O75752 331 aa6□□□□□ -1.45
CD44-228ENST00000528455 DHFRP00374 187 aa6□□□□□ -1.45
CD44-228ENST00000528455 IGLV2-14P01704 120 aa6□□□□□ -1.45
CD44-228ENST00000528455 CTSDP07339 412 aaPredicted RBP6□□□□□ -1.45
CD44-228ENST00000528455 IL3RAP26951 378 aa6□□□□□ -1.45
CD44-228ENST00000528455 HTR1DP28221 377 aa6□□□□□ -1.45
CD44-228ENST00000528455 S100GP29377 79 aa6□□□□□ -1.45
CD44-228ENST00000528455 CEACAM3P40198 252 aa6□□□□□ -1.45
CD44-228ENST00000528455 ZNF137PP52743 207 aa6□□□□□ -1.45
CD44-228ENST00000528455 UBE2MP61081 183 aaKnown RBP6□□□□□ -1.45
CD44-228ENST00000528455 RND3P61587 244 aa6□□□□□ -1.45
CD44-228ENST00000528455 DHODHQ02127 395 aa6□□□□□ -1.45
CD44-228ENST00000528455 GNMTQ14749 295 aa6□□□□□ -1.45
CD44-228ENST00000528455 LTC4SQ16873 150 aa6□□□□□ -1.45
CD44-228ENST00000528455 MIDNQ504T8 468 aa6□□□□□ -1.45
CD44-228ENST00000528455 TMEM128Q5BJH2 165 aa6□□□□□ -1.45
CD44-228ENST00000528455 MINOS1Q5TGZ0 78 aa6□□□□□ -1.45
CD44-228ENST00000528455 ZNF626Q68DY1 528 aa6□□□□□ -1.45
CD44-228ENST00000528455 FAM53AQ6NSI3 398 aaPredicted RBP6□□□□□ -1.45
CD44-228ENST00000528455 C11orf88Q6PI97 169 aa6□□□□□ -1.45
CD44-228ENST00000528455 ZNF66Q6ZN08 573 aa6□□□□□ -1.45
CD44-228ENST00000528455 KCTD9Q7L273 389 aa6□□□□□ -1.45
CD44-228ENST00000528455 SLC25A42Q86VD7 318 aa6□□□□□ -1.45
CD44-228ENST00000528455 LDLRAD3Q86YD5 345 aa6□□□□□ -1.45
CD44-228ENST00000528455 ODF3L1Q8IXM7 274 aa6□□□□□ -1.45
CD44-228ENST00000528455 ZNF645Q8N7E2 425 aa6□□□□□ -1.45
CD44-228ENST00000528455 TCTEX1D1Q8N7M0 179 aa6□□□□□ -1.45
CD44-228ENST00000528455 ENKURQ8TC29 256 aa6□□□□□ -1.45
CD44-228ENST00000528455 SECTM1Q8WVN6 248 aa6□□□□□ -1.45
CD44-228ENST00000528455 ST6GALNAC6Q969X2 333 aa6□□□□□ -1.45
CD44-228ENST00000528455 MALSU1Q96EH3 234 aa6□□□□□ -1.45
CD44-228ENST00000528455 S1PR3Q99500 378 aa6□□□□□ -1.45
CD44-228ENST00000528455 RTBDNQ9BSG5 229 aaPredicted RBP6□□□□□ -1.45
CD44-228ENST00000528455 PCGF1Q9BSM1 259 aa6□□□□□ -1.45
CD44-228ENST00000528455 ABHD14AQ9BUJ0 271 aa6□□□□□ -1.45
CD44-228ENST00000528455 SUCNR1Q9BXA5 334 aa6□□□□□ -1.45
CD44-228ENST00000528455 MMP28Q9H239 520 aa6□□□□□ -1.45
CD44-228ENST00000528455 CCL28Q9NRJ3 127 aa6□□□□□ -1.45
CD44-228ENST00000528455 DPM3Q9P2X0 92 aa6□□□□□ -1.45
CD44-228ENST00000528455 RNF150Q9ULK6 438 aa6□□□□□ -1.45
CD44-228ENST00000528455 C14orf166Q9Y224 244 aaKnown RBP6□□□□□ -1.45
CD44-228ENST00000528455 AMMECR1Q9Y4X0 333 aaPredicted RBP6□□□□□ -1.45
CD44-228ENST00000528455 MINOS1-NBL1R4GNA1 71 aa6□□□□□ -1.45
CD44-228ENST00000528455 ANK3Q12955 4377 aaKnown RBP6□□□□□ -1.45
CD44-228ENST00000528455 hCG_2014768A0A024R1R8 64 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 IGKV1D-13A0A0B4J2D9 117 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 OOSP1A8MZH6 123 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 INMT-MINDY4F8WBC2 141 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 RNASEK-C17orf49H0YIS7 233 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 MPPED1O15442 326 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 PGLYRP1O75594 196 aaPredicted RBP5.99□□□□□ -1.45
CD44-228ENST00000528455 IFNA2P01563 188 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 IGHV3-7P01780 117 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 GAPDHP04406 335 aaKnown RBP5.99□□□□□ -1.45
CD44-228ENST00000528455 IL5P05113 134 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 IGKV1-13P0DP09 117 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 PGAM2P15259 253 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 HOXA5P20719 270 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 MC5RP33032 325 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 GPR12P47775 334 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 LGALS4P56470 323 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 FXYD4P59646 89 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 HLA-DRB5Q30154 266 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 TRIM16LQ309B1 348 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 UTF1Q5T230 341 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 LCE3BQ5TA77 95 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 HCP5Q6MZN7 132 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 FAM71F2Q6NXP2 309 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 PRIMA1Q86XR5 153 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 CENPSQ8N2Z9 138 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 PNKDQ8N490 385 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 CCDC71LQ8N9Z2 235 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 OR10X1Q8NGY0 326 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 NANPQ8TBE9 248 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 LEAP2Q969E1 77 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 LHX4Q969G2 390 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 ABHD14BQ96IU4 210 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 ADTRPQ96IZ2 230 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 HSD17B10Q99714 261 aaKnown RBP5.99□□□□□ -1.45
CD44-228ENST00000528455 ZNF251Q9BRH9 671 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 C5orf66Q9H5L9 145 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 SIRT7Q9NRC8 400 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 FAM212BQ9NTI7 297 aaPredicted RBP5.99□□□□□ -1.45
CD44-228ENST00000528455 SDHAF2Q9NX18 166 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 VSIG4Q9Y279 399 aa5.99□□□□□ -1.45
CD44-228ENST00000528455 TBL2Q9Y4P3 447 aaKnown RBP5.99□□□□□ -1.45
CD44-228ENST00000528455 ATRQ13535 2644 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 PIGBOS1A0A0B4J2F0 54 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 IGHV1-69DA0A0B4J2H0 117 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 TEX13DA0A0J9YY54 714 aaPredicted RBP5.98□□□□□ -1.45
CD44-228ENST00000528455 A0A1W2PPE3 182 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 RNF212BA8MTL3 300 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 ODF3BA8MYP8 253 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 SLC31A2O15432 143 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms