RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 RPS16P62249 146 aaKnown RBP16.13■□□□□ 0.17
VPS28-206ENST00000526734 CX3CL1P78423 397 aa16.13■□□□□ 0.17
VPS28-206ENST00000526734 TMEM267Q0VDI3 215 aaPredicted RBP16.13■□□□□ 0.17
VPS28-206ENST00000526734 PSG5Q15238 335 aa16.13■□□□□ 0.17
VPS28-206ENST00000526734 ZNF260Q3ZCT1 412 aa16.13■□□□□ 0.17
VPS28-206ENST00000526734 FOXB2Q5VYV0 432 aa16.13■□□□□ 0.17
VPS28-206ENST00000526734 DRAXINQ8NBI3 349 aaPredicted RBP16.13■□□□□ 0.17
VPS28-206ENST00000526734 MINDY2Q8NBR6 621 aa16.13■□□□□ 0.17
VPS28-206ENST00000526734 SDHAF2Q9NX18 166 aa16.13■□□□□ 0.17
VPS28-206ENST00000526734 METTL1Q9UBP6 276 aaKnown RBP16.13■□□□□ 0.17
VPS28-206ENST00000526734 TMEM235A6NFC5 223 aa16.12■□□□□ 0.17
VPS28-206ENST00000526734 CCL24O00175 119 aa16.12■□□□□ 0.17
VPS28-206ENST00000526734 SLC22A5O76082 557 aa16.12■□□□□ 0.17
VPS28-206ENST00000526734 IGLV1-40P01703 118 aa16.12■□□□□ 0.17
VPS28-206ENST00000526734 CLEC2LP0C7M8 214 aa16.12■□□□□ 0.17
VPS28-206ENST00000526734 RTL8BQ17RB0 113 aa16.12■□□□□ 0.17
VPS28-206ENST00000526734 IDNKQ5T6J7 187 aa16.12■□□□□ 0.17
VPS28-206ENST00000526734 ZNF562Q6V9R5 426 aa16.12■□□□□ 0.17
VPS28-206ENST00000526734 C18orf65Q6ZTR6 163 aa16.12■□□□□ 0.17
VPS28-206ENST00000526734 UBE2E2Q96LR5 201 aa16.12■□□□□ 0.17
VPS28-206ENST00000526734 ST6GALNAC5Q9BVH7 336 aa16.12■□□□□ 0.17
VPS28-206ENST00000526734 RNF167Q9H6Y7 350 aa16.12■□□□□ 0.17
VPS28-206ENST00000526734 ZMAT5Q9UDW3 170 aaKnown RBP16.12■□□□□ 0.17
VPS28-206ENST00000526734 WSB1Q9Y6I7 421 aa16.12■□□□□ 0.17
VPS28-206ENST00000526734 AIREO43918 545 aa16.11■□□□□ 0.17
VPS28-206ENST00000526734 IGKV1-16P04430 117 aa16.11■□□□□ 0.17
VPS28-206ENST00000526734 PYHIN1Q6K0P9 492 aa16.11■□□□□ 0.17
VPS28-206ENST00000526734 CNIH2Q6PI25 160 aa16.11■□□□□ 0.17
VPS28-206ENST00000526734 NUDCD2Q8WVJ2 157 aa16.11■□□□□ 0.17
VPS28-206ENST00000526734 SLC25A38Q96DW6 304 aa16.11■□□□□ 0.17
VPS28-206ENST00000526734 RAX2Q96IS3 184 aa16.11■□□□□ 0.17
VPS28-206ENST00000526734 DIABLOQ9NR28 239 aa16.11■□□□□ 0.17
VPS28-206ENST00000526734 ELF5Q9UKW6 265 aaPredicted RBP16.11■□□□□ 0.17
VPS28-206ENST00000526734 SPATA2Q9UM82 520 aa16.11■□□□□ 0.17
VPS28-206ENST00000526734 FOXA2Q9Y261 457 aaPredicted RBP16.11■□□□□ 0.17
VPS28-206ENST00000526734 G3V318 75 aa16.1■□□□□ 0.17
VPS28-206ENST00000526734 NDPQ00604 133 aa16.1■□□□□ 0.17
VPS28-206ENST00000526734 RUNX1Q01196 453 aa16.1■□□□□ 0.17
VPS28-206ENST00000526734 C19orf54Q5BKX5 351 aa16.1■□□□□ 0.17
VPS28-206ENST00000526734 YIPF6Q96EC8 236 aa16.1■□□□□ 0.17
VPS28-206ENST00000526734 AURKAIP1Q9NWT8 199 aaPredicted RBP16.1■□□□□ 0.17
VPS28-206ENST00000526734 VSIG4Q9Y279 399 aa16.1■□□□□ 0.17
VPS28-206ENST00000526734 IGKV1D-8A0A087WSZ0 117 aa16.09■□□□□ 0.17
VPS28-206ENST00000526734 LUMP51884 338 aaPredicted RBP16.09■□□□□ 0.17
VPS28-206ENST00000526734 ECSCRQ19T08 205 aa16.09■□□□□ 0.17
VPS28-206ENST00000526734 AKIRIN2Q53H80 203 aa16.09■□□□□ 0.17
VPS28-206ENST00000526734 TMEM177Q53S58 311 aa16.09■□□□□ 0.17
VPS28-206ENST00000526734 LCNL1Q6ZST4 164 aa16.09■□□□□ 0.17
VPS28-206ENST00000526734 OR5M8Q8NGP6 311 aa16.09■□□□□ 0.17
VPS28-206ENST00000526734 OR5H6Q8NGV6 325 aa16.09■□□□□ 0.17
VPS28-206ENST00000526734 ABHD5Q8WTS1 349 aa16.09■□□□□ 0.17
VPS28-206ENST00000526734 HARBI1Q96MB7 349 aa16.09■□□□□ 0.17
VPS28-206ENST00000526734 ANXA10Q9UJ72 324 aa16.09■□□□□ 0.17
VPS28-206ENST00000526734 OR2W1Q9Y3N9 320 aa16.09■□□□□ 0.17
VPS28-206ENST00000526734 NUBP2Q9Y5Y2 271 aa16.09■□□□□ 0.17
VPS28-206ENST00000526734 TRIM64CA6NLI5 447 aa16.08■□□□□ 0.16
VPS28-206ENST00000526734 CA2P00918 260 aa16.08■□□□□ 0.16
VPS28-206ENST00000526734 CD40LGP29965 261 aa16.08■□□□□ 0.16
VPS28-206ENST00000526734 RAB9AP51151 201 aa16.08■□□□□ 0.16
VPS28-206ENST00000526734 EGFEM1PQ0D2K5 195 aa16.08■□□□□ 0.16
VPS28-206ENST00000526734 FHL3Q13643 280 aa16.08■□□□□ 0.16
VPS28-206ENST00000526734 PPP1R27Q86WC6 154 aa16.08■□□□□ 0.16
VPS28-206ENST00000526734 ZNF645Q8N7E2 425 aa16.08■□□□□ 0.16
VPS28-206ENST00000526734 ZNF491Q8N8L2 437 aa16.08■□□□□ 0.16
VPS28-206ENST00000526734 TRAV18A0A075B6X5 111 aa16.07■□□□□ 0.16
VPS28-206ENST00000526734 A0A1W2PN81 502 aa16.07■□□□□ 0.16
VPS28-206ENST00000526734 FCN1O00602 326 aa16.07■□□□□ 0.16
VPS28-206ENST00000526734 SLC25A17O43808 307 aa16.07■□□□□ 0.16
VPS28-206ENST00000526734 SSX5O60225 188 aa16.07■□□□□ 0.16
VPS28-206ENST00000526734 HLA-DQB1P01920 261 aa16.07■□□□□ 0.16
VPS28-206ENST00000526734 PRB2P02812 416 aaPredicted RBP16.07■□□□□ 0.16
VPS28-206ENST00000526734 DUTP33316 252 aaKnown RBP16.07■□□□□ 0.16
VPS28-206ENST00000526734 CHRNA7P36544 502 aa16.07■□□□□ 0.16
VPS28-206ENST00000526734 CBX5P45973 191 aa16.07■□□□□ 0.16
VPS28-206ENST00000526734 MRAPQ8TCY5 172 aa16.07■□□□□ 0.16
VPS28-206ENST00000526734 ARPC1AQ92747 370 aa16.07■□□□□ 0.16
VPS28-206ENST00000526734 FBXO7Q9Y3I1 522 aa16.07■□□□□ 0.16
VPS28-206ENST00000526734 SHOXO15266 292 aa16.06■□□□□ 0.16
VPS28-206ENST00000526734 OR8U8P0C7N1 319 aa16.06■□□□□ 0.16
VPS28-206ENST00000526734 EGR2P11161 476 aaPredicted RBP16.06■□□□□ 0.16
VPS28-206ENST00000526734 LINC00205P59089 165 aa16.06■□□□□ 0.16
VPS28-206ENST00000526734 ACTBL2Q562R1 376 aa16.06■□□□□ 0.16
VPS28-206ENST00000526734 UNQ5815/PRO19632Q6UWF5 114 aa16.06■□□□□ 0.16
VPS28-206ENST00000526734 BVESQ8NE79 360 aa16.06■□□□□ 0.16
VPS28-206ENST00000526734 BEST4Q8NFU0 473 aa16.06■□□□□ 0.16
VPS28-206ENST00000526734 OSR1Q8TAX0 266 aaPredicted RBP16.06■□□□□ 0.16
VPS28-206ENST00000526734 DDB2Q92466 427 aa16.06■□□□□ 0.16
VPS28-206ENST00000526734 KCTD12Q96CX2 325 aaKnown RBP16.06■□□□□ 0.16
VPS28-206ENST00000526734 C5orf30Q96GV9 206 aa16.06■□□□□ 0.16
VPS28-206ENST00000526734 TMEM68Q96MH6 324 aa16.06■□□□□ 0.16
VPS28-206ENST00000526734 CLCC1Q96S66 551 aa16.06■□□□□ 0.16
VPS28-206ENST00000526734 KLK15Q9H2R5 256 aa16.06■□□□□ 0.16
VPS28-206ENST00000526734 SLA2Q9H6Q3 261 aa16.06■□□□□ 0.16
VPS28-206ENST00000526734 AUNIPQ9H7T9 357 aa16.06■□□□□ 0.16
VPS28-206ENST00000526734 PRELID3BQ9Y3B1 194 aa16.06■□□□□ 0.16
VPS28-206ENST00000526734 I3L521 148 aa16.05■□□□□ 0.16
VPS28-206ENST00000526734 IGLV2-23P01705 113 aa16.05■□□□□ 0.16
VPS28-206ENST00000526734 RAB25P57735 213 aa16.05■□□□□ 0.16
VPS28-206ENST00000526734 ARPC4P59998 168 aa16.05■□□□□ 0.16
VPS28-206ENST00000526734 KIAA0141Q14154 515 aaPredicted RBP16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms