RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 PYHIN1Q6K0P9 492 aa8.07□□□□□ -1.12
VPS28-204ENST00000526054 CCBE1Q6UXH8 406 aaPredicted RBP8.07□□□□□ -1.12
VPS28-204ENST00000526054 NDUFA11Q86Y39 141 aa8.07□□□□□ -1.12
VPS28-204ENST00000526054 OR5H2Q8NGV7 314 aa8.07□□□□□ -1.12
VPS28-204ENST00000526054 OR8U1Q8NH10 309 aa8.07□□□□□ -1.12
VPS28-204ENST00000526054 SNAPC3Q92966 411 aa8.07□□□□□ -1.12
VPS28-204ENST00000526054 R3HDM4Q96D70 268 aa8.07□□□□□ -1.12
VPS28-204ENST00000526054 RBM14Q96PK6 669 aaKnown RBP8.07□□□□□ -1.12
VPS28-204ENST00000526054 CITED2Q99967 270 aaPredicted RBP8.07□□□□□ -1.12
VPS28-204ENST00000526054 NABP2Q9BQ15 211 aa8.07□□□□□ -1.12
VPS28-204ENST00000526054 PRSS22Q9GZN4 317 aa8.07□□□□□ -1.12
VPS28-204ENST00000526054 EHFQ9NZC4 300 aa8.07□□□□□ -1.12
VPS28-204ENST00000526054 MOB4Q9Y3A3 225 aa8.07□□□□□ -1.12
VPS28-204ENST00000526054 OR5H14A6NHG9 310 aa8.06□□□□□ -1.12
VPS28-204ENST00000526054 J3QRK9 145 aa8.06□□□□□ -1.12
VPS28-204ENST00000526054 M0R1X1 148 aa8.06□□□□□ -1.12
VPS28-204ENST00000526054 SLC22A5O76082 557 aa8.06□□□□□ -1.12
VPS28-204ENST00000526054 MOSP00540 346 aa8.06□□□□□ -1.12
VPS28-204ENST00000526054 VDAC2P45880 294 aaPredicted RBP8.06□□□□□ -1.12
VPS28-204ENST00000526054 DCTN2Q13561 401 aaKnown RBP8.06□□□□□ -1.12
VPS28-204ENST00000526054 EBI3Q14213 229 aa8.06□□□□□ -1.12
VPS28-204ENST00000526054 HNF4GQ14541 408 aa8.06□□□□□ -1.12
VPS28-204ENST00000526054 TMEM95Q3KNT9 176 aa8.06□□□□□ -1.12
VPS28-204ENST00000526054 ACTBL2Q562R1 376 aa8.06□□□□□ -1.12
VPS28-204ENST00000526054 PYDC2Q56P42 97 aa8.06□□□□□ -1.12
VPS28-204ENST00000526054 RNASE12Q5GAN4 147 aaKnown RBP8.06□□□□□ -1.12
VPS28-204ENST00000526054 GDPD1Q8N9F7 314 aa8.06□□□□□ -1.12
VPS28-204ENST00000526054 FCAMRQ8WWV6 532 aa8.06□□□□□ -1.12
VPS28-204ENST00000526054 EAF1Q96JC9 268 aaPredicted RBP8.06□□□□□ -1.12
VPS28-204ENST00000526054 SOSTQ9BQB4 213 aa8.06□□□□□ -1.12
VPS28-204ENST00000526054 ZNF251Q9BRH9 671 aa8.06□□□□□ -1.12
VPS28-204ENST00000526054 CCDC32Q9BV29 185 aa8.06□□□□□ -1.12
VPS28-204ENST00000526054 SRRQ9GZT4 340 aa8.06□□□□□ -1.12
VPS28-204ENST00000526054 PALMDQ9NP74 551 aa8.06□□□□□ -1.12
VPS28-204ENST00000526054 GAB2Q9UQC2 676 aa8.06□□□□□ -1.12
VPS28-204ENST00000526054 ADARB2-AS1A8MUL3 147 aa8.05□□□□□ -1.12
VPS28-204ENST00000526054 ZNF736B4DX44 427 aaPredicted RBP8.05□□□□□ -1.12
VPS28-204ENST00000526054 GABARAPH6UMI1 98 aa8.05□□□□□ -1.12
VPS28-204ENST00000526054 CTDSPLO15194 276 aa8.05□□□□□ -1.12
VPS28-204ENST00000526054 FGF16O43320 207 aa8.05□□□□□ -1.12
VPS28-204ENST00000526054 RBBP9O75884 186 aa8.05□□□□□ -1.12
VPS28-204ENST00000526054 TUSC2O75896 110 aa8.05□□□□□ -1.12
VPS28-204ENST00000526054 PPYP01298 95 aa8.05□□□□□ -1.12
VPS28-204ENST00000526054 APOA2P02652 100 aa8.05□□□□□ -1.12
VPS28-204ENST00000526054 PMP2P02689 132 aa8.05□□□□□ -1.12
VPS28-204ENST00000526054 CT45A6P0DMU7 189 aa8.05□□□□□ -1.12
VPS28-204ENST00000526054 CT45A5P0DMU8 189 aa8.05□□□□□ -1.12
VPS28-204ENST00000526054 CT45A7P0DMV0 189 aa8.05□□□□□ -1.12
VPS28-204ENST00000526054 HLA-DMAP28067 261 aa8.05□□□□□ -1.12
VPS28-204ENST00000526054 FCGR2CP31995 323 aa8.05□□□□□ -1.12
VPS28-204ENST00000526054 MC5RP33032 325 aa8.05□□□□□ -1.12
VPS28-204ENST00000526054 HERV-K104P61576 105 aa8.05□□□□□ -1.12
VPS28-204ENST00000526054 SSBP1Q04837 148 aaKnown RBP8.05□□□□□ -1.12
VPS28-204ENST00000526054 ZNF79Q15937 498 aa8.05□□□□□ -1.12
VPS28-204ENST00000526054 OVCH2Q7RTZ1 564 aa8.05□□□□□ -1.12
VPS28-204ENST00000526054 ZNF645Q8N7E2 425 aa8.05□□□□□ -1.12
VPS28-204ENST00000526054 OR8H1Q8NGG4 311 aa8.05□□□□□ -1.12
VPS28-204ENST00000526054 OR52I2Q8NH67 350 aa8.05□□□□□ -1.12
VPS28-204ENST00000526054 WIPF2Q8TF74 440 aaPredicted RBP8.05□□□□□ -1.12
VPS28-204ENST00000526054 ADTRPQ96IZ2 230 aa8.05□□□□□ -1.12
VPS28-204ENST00000526054 ABHD1Q96SE0 405 aa8.05□□□□□ -1.12
VPS28-204ENST00000526054 WNT10AQ9GZT5 417 aa8.05□□□□□ -1.12
VPS28-204ENST00000526054 AURKAIP1Q9NWT8 199 aaPredicted RBP8.05□□□□□ -1.12
VPS28-204ENST00000526054 SDHAF2Q9NX18 166 aa8.05□□□□□ -1.12
VPS28-204ENST00000526054 WASHC3Q9Y3C0 194 aa8.05□□□□□ -1.12
VPS28-204ENST00000526054 A0A1W2PRX2 142 aa8.04□□□□□ -1.12
VPS28-204ENST00000526054 NCBP2LA6PVI3 153 aaKnown RBP8.04□□□□□ -1.12
VPS28-204ENST00000526054 H0YJW9 148 aa8.04□□□□□ -1.12
VPS28-204ENST00000526054 H7C2Y5 167 aa8.04□□□□□ -1.12
VPS28-204ENST00000526054 UPK1BO75841 260 aa8.04□□□□□ -1.12
VPS28-204ENST00000526054 CD33P20138 364 aa8.04□□□□□ -1.12
VPS28-204ENST00000526054 TBPP20226 339 aa8.04□□□□□ -1.12
VPS28-204ENST00000526054 AADACP22760 399 aa8.04□□□□□ -1.12
VPS28-204ENST00000526054 HRH1P35367 487 aa8.04□□□□□ -1.12
VPS28-204ENST00000526054 THBS3P49746 956 aa8.04□□□□□ -1.12
VPS28-204ENST00000526054 DGCR2P98153 550 aa8.04□□□□□ -1.12
VPS28-204ENST00000526054 TAGLNQ01995 201 aaKnown RBP8.04□□□□□ -1.12
VPS28-204ENST00000526054 CBX3Q13185 183 aa8.04□□□□□ -1.12
VPS28-204ENST00000526054 DYRK1AQ13627 763 aa8.04□□□□□ -1.12
VPS28-204ENST00000526054 TRIQKQ629K1 86 aa8.04□□□□□ -1.12
VPS28-204ENST00000526054 GLDNQ6ZMI3 551 aaPredicted RBP8.04□□□□□ -1.12
VPS28-204ENST00000526054 PDPNQ86YL7 162 aa8.04□□□□□ -1.12
VPS28-204ENST00000526054 Q8N402 240 aa8.04□□□□□ -1.12
VPS28-204ENST00000526054 Q8N6K4 173 aa8.04□□□□□ -1.12
VPS28-204ENST00000526054 OR5AN1Q8NGI8 311 aa8.04□□□□□ -1.12
VPS28-204ENST00000526054 SMIM4Q8WVI0 70 aa8.04□□□□□ -1.12
VPS28-204ENST00000526054 GIMAP1Q8WWP7 306 aa8.04□□□□□ -1.12
VPS28-204ENST00000526054 MTFP1Q9UDX5 166 aa8.04□□□□□ -1.12
VPS28-204ENST00000526054 KMT2CQ8NEZ4 4911 aaKnown RBP8.04□□□□□ -1.12
VPS28-204ENST00000526054 IGKV1D-13A0A0B4J2D9 117 aa8.03□□□□□ -1.12
VPS28-204ENST00000526054 GSTZ1O43708 216 aaPredicted RBP8.03□□□□□ -1.12
VPS28-204ENST00000526054 PROP1O75360 226 aa8.03□□□□□ -1.12
VPS28-204ENST00000526054 IGKV1-13P0DP09 117 aa8.03□□□□□ -1.12
VPS28-204ENST00000526054 PF4V1P10720 104 aa8.03□□□□□ -1.12
VPS28-204ENST00000526054 IL7P13232 177 aa8.03□□□□□ -1.12
VPS28-204ENST00000526054 RFX2P48378 723 aa8.03□□□□□ -1.12
VPS28-204ENST00000526054 INPP1P49441 399 aa8.03□□□□□ -1.12
VPS28-204ENST00000526054 TAS2R19P59542 299 aa8.03□□□□□ -1.12
VPS28-204ENST00000526054 FXYD4P59646 89 aa8.03□□□□□ -1.12
VPS28-204ENST00000526054 TSPAN5P62079 268 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms