RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 CX3CL1P78423 397 aa12.78□□□□□ -0.36
LSM1-205ENST00000523511 PSG5Q15238 335 aa12.78□□□□□ -0.36
LSM1-205ENST00000523511 PYHIN1Q6K0P9 492 aa12.78□□□□□ -0.36
LSM1-205ENST00000523511 C8orf86Q6ZUL3 223 aa12.78□□□□□ -0.36
LSM1-205ENST00000523511 ZNF383Q8NA42 475 aa12.78□□□□□ -0.36
LSM1-205ENST00000523511 UBE2E2Q96LR5 201 aa12.78□□□□□ -0.36
LSM1-205ENST00000523511 RNF167Q9H6Y7 350 aa12.78□□□□□ -0.36
LSM1-205ENST00000523511 SDHAF2Q9NX18 166 aa12.78□□□□□ -0.36
LSM1-205ENST00000523511 MEGF8Q7Z7M0 2845 aa12.78□□□□□ -0.36
LSM1-205ENST00000523511 TMEM235A6NFC5 223 aa12.77□□□□□ -0.37
LSM1-205ENST00000523511 CCL24O00175 119 aa12.77□□□□□ -0.37
LSM1-205ENST00000523511 ATP6V0E1O15342 81 aa12.77□□□□□ -0.37
LSM1-205ENST00000523511 PSMB8P28062 276 aa12.77□□□□□ -0.37
LSM1-205ENST00000523511 PPIFP30405 207 aaKnown RBP12.77□□□□□ -0.37
LSM1-205ENST00000523511 ARPC4P59998 168 aa12.77□□□□□ -0.37
LSM1-205ENST00000523511 CFHR3Q02985 330 aa12.77□□□□□ -0.37
LSM1-205ENST00000523511 MRPL41Q8IXM3 137 aaKnown RBP12.77□□□□□ -0.37
LSM1-205ENST00000523511 H1FOOQ8IZA3 346 aaPredicted RBP12.77□□□□□ -0.37
LSM1-205ENST00000523511 ANXA10Q9UJ72 324 aa12.77□□□□□ -0.37
LSM1-205ENST00000523511 VSIG4Q9Y279 399 aa12.77□□□□□ -0.37
LSM1-205ENST00000523511 PRELID3BQ9Y3B1 194 aa12.77□□□□□ -0.37
LSM1-205ENST00000523511 OR2W1Q9Y3N9 320 aa12.77□□□□□ -0.37
LSM1-205ENST00000523511 SHOXO15266 292 aa12.76□□□□□ -0.37
LSM1-205ENST00000523511 PROP1O75360 226 aa12.76□□□□□ -0.37
LSM1-205ENST00000523511 CNIH1O95406 144 aa12.76□□□□□ -0.37
LSM1-205ENST00000523511 AKIRIN2Q53H80 203 aa12.76□□□□□ -0.37
LSM1-205ENST00000523511 LCNL1Q6ZST4 164 aa12.76□□□□□ -0.37
LSM1-205ENST00000523511 ZNF645Q8N7E2 425 aa12.76□□□□□ -0.37
LSM1-205ENST00000523511 LINC00482Q8N8I6 264 aa12.76□□□□□ -0.37
LSM1-205ENST00000523511 OR5M8Q8NGP6 311 aa12.76□□□□□ -0.37
LSM1-205ENST00000523511 C4orf3Q8WVX3 66 aa12.76□□□□□ -0.37
LSM1-205ENST00000523511 YIPF6Q96EC8 236 aa12.76□□□□□ -0.37
LSM1-205ENST00000523511 CLCC1Q96S66 551 aa12.76□□□□□ -0.37
LSM1-205ENST00000523511 FOXA2Q9Y261 457 aaPredicted RBP12.76□□□□□ -0.37
LSM1-205ENST00000523511 SMIM31A0A1B0GVY4 71 aa12.75□□□□□ -0.37
LSM1-205ENST00000523511 G3V318 75 aa12.75□□□□□ -0.37
LSM1-205ENST00000523511 IGKV1-16P04430 117 aa12.75□□□□□ -0.37
LSM1-205ENST00000523511 RAB9AP51151 201 aa12.75□□□□□ -0.37
LSM1-205ENST00000523511 RAB25P57735 213 aa12.75□□□□□ -0.37
LSM1-205ENST00000523511 ECSCRQ19T08 205 aa12.75□□□□□ -0.37
LSM1-205ENST00000523511 VMA21Q3ZAQ7 101 aa12.75□□□□□ -0.37
LSM1-205ENST00000523511 PPP1R27Q86WC6 154 aa12.75□□□□□ -0.37
LSM1-205ENST00000523511 MINDY2Q8NBR6 621 aa12.75□□□□□ -0.37
LSM1-205ENST00000523511 NUDCD2Q8WVJ2 157 aa12.75□□□□□ -0.37
LSM1-205ENST00000523511 KCTD12Q96CX2 325 aaKnown RBP12.75□□□□□ -0.37
LSM1-205ENST00000523511 HARBI1Q96MB7 349 aa12.75□□□□□ -0.37
LSM1-205ENST00000523511 TMEM68Q96MH6 324 aa12.75□□□□□ -0.37
LSM1-205ENST00000523511 P2RX4Q99571 388 aa12.75□□□□□ -0.37
LSM1-205ENST00000523511 DCUN1D5Q9BTE7 237 aa12.75□□□□□ -0.37
LSM1-205ENST00000523511 ELF5Q9UKW6 265 aaPredicted RBP12.75□□□□□ -0.37
LSM1-205ENST00000523511 MRPS7Q9Y2R9 242 aaKnown RBP12.75□□□□□ -0.37
LSM1-205ENST00000523511 A0A1W2PN81 502 aa12.74□□□□□ -0.37
LSM1-205ENST00000523511 FCN1O00602 326 aa12.74□□□□□ -0.37
LSM1-205ENST00000523511 XRCC3O43542 346 aa12.74□□□□□ -0.37
LSM1-205ENST00000523511 SLC25A17O43808 307 aa12.74□□□□□ -0.37
LSM1-205ENST00000523511 CREBL2O60519 120 aaPredicted RBP12.74□□□□□ -0.37
LSM1-205ENST00000523511 IGLV1-40P01703 118 aa12.74□□□□□ -0.37
LSM1-205ENST00000523511 HLA-DQB1P01920 261 aa12.74□□□□□ -0.37
LSM1-205ENST00000523511 CHRNA7P36544 502 aa12.74□□□□□ -0.37
LSM1-205ENST00000523511 RPS19P39019 145 aaKnown RBP12.74□□□□□ -0.37
LSM1-205ENST00000523511 CRIP2P52943 208 aaPredicted RBP12.74□□□□□ -0.37
LSM1-205ENST00000523511 LSM3P62310 102 aaKnown RBP12.74□□□□□ -0.37
LSM1-205ENST00000523511 ACTBL2Q562R1 376 aa12.74□□□□□ -0.37
LSM1-205ENST00000523511 FOXB2Q5VYV0 432 aa12.74□□□□□ -0.37
LSM1-205ENST00000523511 BVESQ8NE79 360 aa12.74□□□□□ -0.37
LSM1-205ENST00000523511 BEST4Q8NFU0 473 aa12.74□□□□□ -0.37
LSM1-205ENST00000523511 OR5H6Q8NGV6 325 aa12.74□□□□□ -0.37
LSM1-205ENST00000523511 OSR1Q8TAX0 266 aaPredicted RBP12.74□□□□□ -0.37
LSM1-205ENST00000523511 RBMXL1Q96E39 390 aaKnown RBP12.74□□□□□ -0.37
LSM1-205ENST00000523511 SLA2Q9H6Q3 261 aa12.74□□□□□ -0.37
LSM1-205ENST00000523511 NUBP2Q9Y5Y2 271 aa12.74□□□□□ -0.37
LSM1-205ENST00000523511 A3GALT2U3KPV4 340 aa12.74□□□□□ -0.37
LSM1-205ENST00000523511 VWFP04275 2813 aa12.73□□□□□ -0.37
LSM1-205ENST00000523511 CA2P00918 260 aa12.73□□□□□ -0.37
LSM1-205ENST00000523511 OR8U8P0C7N1 319 aa12.73□□□□□ -0.37
LSM1-205ENST00000523511 NFYAP23511 347 aaPredicted RBP12.73□□□□□ -0.37
LSM1-205ENST00000523511 DUTP33316 252 aaKnown RBP12.73□□□□□ -0.37
LSM1-205ENST00000523511 FXYD3Q14802 87 aa12.73□□□□□ -0.37
LSM1-205ENST00000523511 TMEM177Q53S58 311 aa12.73□□□□□ -0.37
LSM1-205ENST00000523511 UBE2NLQ5JXB2 153 aa12.73□□□□□ -0.37
LSM1-205ENST00000523511 UNQ5815/PRO19632Q6UWF5 114 aa12.73□□□□□ -0.37
LSM1-205ENST00000523511 HOGA1Q86XE5 327 aa12.73□□□□□ -0.37
LSM1-205ENST00000523511 ZNF491Q8N8L2 437 aa12.73□□□□□ -0.37
LSM1-205ENST00000523511 BORCS5Q969J3 196 aa12.73□□□□□ -0.37
LSM1-205ENST00000523511 RAX2Q96IS3 184 aa12.73□□□□□ -0.37
LSM1-205ENST00000523511 HSD17B10Q99714 261 aaKnown RBP12.73□□□□□ -0.37
LSM1-205ENST00000523511 AIFM2Q9BRQ8 373 aa12.73□□□□□ -0.37
LSM1-205ENST00000523511 AUNIPQ9H7T9 357 aa12.73□□□□□ -0.37
LSM1-205ENST00000523511 IGKV1D-8A0A087WSZ0 117 aa12.72□□□□□ -0.37
LSM1-205ENST00000523511 J3QRK9 145 aa12.72□□□□□ -0.37
LSM1-205ENST00000523511 TUSC2O75896 110 aa12.72□□□□□ -0.37
LSM1-205ENST00000523511 ACTL6BO94805 426 aa12.72□□□□□ -0.37
LSM1-205ENST00000523511 ETV3LQ6ZN32 361 aa12.72□□□□□ -0.37
LSM1-205ENST00000523511 C18orf65Q6ZTR6 163 aa12.72□□□□□ -0.37
LSM1-205ENST00000523511 TEX45Q8NA69 505 aa12.72□□□□□ -0.37
LSM1-205ENST00000523511 OR11H1Q8NG94 326 aa12.72□□□□□ -0.37
LSM1-205ENST00000523511 MRAPQ8TCY5 172 aa12.72□□□□□ -0.37
LSM1-205ENST00000523511 ACOT12Q8WYK0 555 aa12.72□□□□□ -0.37
LSM1-205ENST00000523511 ARPC1AQ92747 370 aa12.72□□□□□ -0.37
LSM1-205ENST00000523511 SLC25A46Q96AG3 418 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms