RNA–Protein interactions for RNA: ENST00000506244.5

SNCA-209, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 570 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-209ENST00000506244 TPPPO94811 219 aa13.18□□□□□ -0.3
SNCA-209ENST00000506244 VDAC1P21796 283 aa13.18□□□□□ -0.3
SNCA-209ENST00000506244 SPCS2Q15005 226 aa13.18□□□□□ -0.3
SNCA-209ENST00000506244 CDK10Q15131 360 aa13.18□□□□□ -0.3
SNCA-209ENST00000506244 OR4F17Q8NGA8 305 aa13.18□□□□□ -0.3
SNCA-209ENST00000506244 SNAPC3Q92966 411 aa13.18□□□□□ -0.3
SNCA-209ENST00000506244 NOL4LQ96MY1 436 aaPredicted RBP13.18□□□□□ -0.3
SNCA-209ENST00000506244 OR4F4Q96R69 305 aa13.18□□□□□ -0.3
SNCA-209ENST00000506244 MRPS7Q9Y2R9 242 aaKnown RBP13.18□□□□□ -0.3
SNCA-209ENST00000506244 TSSC4Q9Y5U2 329 aaPredicted RBP13.18□□□□□ -0.3
SNCA-209ENST00000506244 TCRBV4S1A1TA0A5B7 111 aa13.17□□□□□ -0.3
SNCA-209ENST00000506244 SULT1C2O00338 296 aa13.17□□□□□ -0.3
SNCA-209ENST00000506244 TSPAN15O95858 294 aa13.17□□□□□ -0.3
SNCA-209ENST00000506244 IGKV1-16P04430 117 aa13.17□□□□□ -0.3
SNCA-209ENST00000506244 IGF1P05019 195 aa13.17□□□□□ -0.3
SNCA-209ENST00000506244 CNTFRP26992 372 aa13.17□□□□□ -0.3
SNCA-209ENST00000506244 FCGR2CP31995 323 aa13.17□□□□□ -0.3
SNCA-209ENST00000506244 DUTP33316 252 aaKnown RBP13.17□□□□□ -0.3
SNCA-209ENST00000506244 RPS16P62249 146 aaKnown RBP13.17□□□□□ -0.3
SNCA-209ENST00000506244 CD83Q01151 205 aa13.17□□□□□ -0.3
SNCA-209ENST00000506244 MSMO1Q15800 293 aa13.17□□□□□ -0.3
SNCA-209ENST00000506244 NSUN5P1Q3KNT7 163 aa13.17□□□□□ -0.3
SNCA-209ENST00000506244 KHDC1LQ5JSQ8 128 aa13.17□□□□□ -0.3
SNCA-209ENST00000506244 LIN54Q6MZP7 749 aa13.17□□□□□ -0.3
SNCA-209ENST00000506244 BORCS5Q969J3 196 aa13.17□□□□□ -0.3
SNCA-209ENST00000506244 ISOC1Q96CN7 298 aa13.17□□□□□ -0.3
SNCA-209ENST00000506244 RITA1Q96K30 269 aa13.17□□□□□ -0.3
SNCA-209ENST00000506244 HSPB9Q9BQS6 159 aa13.17□□□□□ -0.3
SNCA-209ENST00000506244 PRELID3BQ9Y3B1 194 aa13.17□□□□□ -0.3
SNCA-209ENST00000506244 MGAM2Q2M2H8 2515 aa13.16□□□□□ -0.3
SNCA-209ENST00000506244 RGS5O15539 181 aa13.16□□□□□ -0.3
SNCA-209ENST00000506244 PPYP01298 95 aa13.16□□□□□ -0.3
SNCA-209ENST00000506244 RCVRNP35243 200 aa13.16□□□□□ -0.3
SNCA-209ENST00000506244 LGALS7P47929 136 aa13.16□□□□□ -0.3
SNCA-209ENST00000506244 HERV-K104P61576 105 aa13.16□□□□□ -0.3
SNCA-209ENST00000506244 KCTD9Q7L273 389 aa13.16□□□□□ -0.3
SNCA-209ENST00000506244 SNX29P2Q8IUI4 249 aa13.16□□□□□ -0.3
SNCA-209ENST00000506244 OR5H2Q8NGV7 314 aa13.16□□□□□ -0.3
SNCA-209ENST00000506244 GPX8Q8TED1 209 aa13.16□□□□□ -0.3
SNCA-209ENST00000506244 C5orf30Q96GV9 206 aa13.16□□□□□ -0.3
SNCA-209ENST00000506244 HARBI1Q96MB7 349 aa13.16□□□□□ -0.3
SNCA-209ENST00000506244 HSD17B10Q99714 261 aaKnown RBP13.16□□□□□ -0.3
SNCA-209ENST00000506244 OR51J1Q9H342 316 aa13.16□□□□□ -0.3
SNCA-209ENST00000506244 FBXL15Q9H469 300 aa13.16□□□□□ -0.3
SNCA-209ENST00000506244 EHFQ9NZC4 300 aa13.16□□□□□ -0.3
SNCA-209ENST00000506244 METTL1Q9UBP6 276 aaKnown RBP13.16□□□□□ -0.3
SNCA-209ENST00000506244 EXTL2Q9UBQ6 330 aa13.16□□□□□ -0.3
SNCA-209ENST00000506244 RBMX2Q9Y388 322 aaKnown RBP13.16□□□□□ -0.3
SNCA-209ENST00000506244 IGKV1D-13A0A0B4J2D9 117 aa13.15□□□□□ -0.3
SNCA-209ENST00000506244 H3BMQ9 156 aa13.15□□□□□ -0.3
SNCA-209ENST00000506244 J3QRK9 145 aa13.15□□□□□ -0.3
SNCA-209ENST00000506244 FCER2P06734 321 aa13.15□□□□□ -0.3
SNCA-209ENST00000506244 IGKV1-13P0DP09 117 aa13.15□□□□□ -0.3
SNCA-209ENST00000506244 NAT1P18440 290 aa13.15□□□□□ -0.3
SNCA-209ENST00000506244 AADACP22760 399 aa13.15□□□□□ -0.3
SNCA-209ENST00000506244 PSG5Q15238 335 aa13.15□□□□□ -0.3
SNCA-209ENST00000506244 ZNF660Q6AZW8 331 aaPredicted RBP13.15□□□□□ -0.3
SNCA-209ENST00000506244 TEX38Q6PEX7 206 aa13.15□□□□□ -0.3
SNCA-209ENST00000506244 ZNF329Q86UD4 541 aa13.15□□□□□ -0.3
SNCA-209ENST00000506244 ZBTB34Q8NCN2 500 aa13.15□□□□□ -0.3
SNCA-209ENST00000506244 DYNC2LI1Q8TCX1 351 aa13.15□□□□□ -0.3
SNCA-209ENST00000506244 SECTM1Q8WVN6 248 aa13.15□□□□□ -0.3
SNCA-209ENST00000506244 GIMAP1Q8WWP7 306 aa13.15□□□□□ -0.3
SNCA-209ENST00000506244 RBMXL1Q96E39 390 aaKnown RBP13.15□□□□□ -0.3
SNCA-209ENST00000506244 PARP11Q9NR21 331 aa13.15□□□□□ -0.3
SNCA-209ENST00000506244 LINC00527Q9UJ94 153 aa13.15□□□□□ -0.3
SNCA-209ENST00000506244 IGHV7-81A0A0B4J1V7 117 aa13.14□□□□□ -0.31
SNCA-209ENST00000506244 CCDC160A6NGH7 325 aa13.14□□□□□ -0.31
SNCA-209ENST00000506244 SHOXO15266 292 aa13.14□□□□□ -0.31
SNCA-209ENST00000506244 PF4V1P10720 104 aa13.14□□□□□ -0.31
SNCA-209ENST00000506244 SLC6A1P30531 599 aa13.14□□□□□ -0.31
SNCA-209ENST00000506244 TMEM177Q53S58 311 aa13.14□□□□□ -0.31
SNCA-209ENST00000506244 ACTBL2Q562R1 376 aa13.14□□□□□ -0.31
SNCA-209ENST00000506244 CXorf66Q5JRM2 361 aaPredicted RBP13.14□□□□□ -0.31
SNCA-209ENST00000506244 ZNF66Q6ZN08 573 aa13.14□□□□□ -0.31
SNCA-209ENST00000506244 OVCH2Q7RTZ1 564 aa13.14□□□□□ -0.31
SNCA-209ENST00000506244 BVESQ8NE79 360 aa13.14□□□□□ -0.31
SNCA-209ENST00000506244 FAM110DQ8TAY7 271 aaPredicted RBP13.14□□□□□ -0.31
SNCA-209ENST00000506244 DDB2Q92466 427 aa13.14□□□□□ -0.31
SNCA-209ENST00000506244 R3HDM4Q96D70 268 aa13.14□□□□□ -0.31
SNCA-209ENST00000506244 RABL2AQ9UBK7 228 aaPredicted RBP13.14□□□□□ -0.31
SNCA-209ENST00000506244 RABL2BQ9UNT1 228 aa13.14□□□□□ -0.31
SNCA-209ENST00000506244 WNK1Q9H4A3 2382 aa13.13□□□□□ -0.31
SNCA-209ENST00000506244 A0A1W2PRX2 142 aa13.13□□□□□ -0.31
SNCA-209ENST00000506244 LINC01548A6NM66 108 aa13.13□□□□□ -0.31
SNCA-209ENST00000506244 ATP6V0E1O15342 81 aa13.13□□□□□ -0.31
SNCA-209ENST00000506244 SLC25A17O43808 307 aa13.13□□□□□ -0.31
SNCA-209ENST00000506244 CREBL2O60519 120 aaPredicted RBP13.13□□□□□ -0.31
SNCA-209ENST00000506244 ELANEP08246 267 aa13.13□□□□□ -0.31
SNCA-209ENST00000506244 KIR2DS2P43631 304 aa13.13□□□□□ -0.31
SNCA-209ENST00000506244 LINC00205P59089 165 aa13.13□□□□□ -0.31
SNCA-209ENST00000506244 FXYD4P59646 89 aa13.13□□□□□ -0.31
SNCA-209ENST00000506244 FOXE3Q13461 319 aa13.13□□□□□ -0.31
SNCA-209ENST00000506244 DYRK1AQ13627 763 aa13.13□□□□□ -0.31
SNCA-209ENST00000506244 VMA21Q3ZAQ7 101 aa13.13□□□□□ -0.31
SNCA-209ENST00000506244 TCTEX1D4Q5JR98 221 aa13.13□□□□□ -0.31
SNCA-209ENST00000506244 C10orf99Q6UWK7 81 aa13.13□□□□□ -0.31
SNCA-209ENST00000506244 TCTEX1D1Q8N7M0 179 aa13.13□□□□□ -0.31
SNCA-209ENST00000506244 OR4S2Q8NH73 311 aa13.13□□□□□ -0.31
SNCA-209ENST00000506244 OSR1Q8TAX0 266 aaPredicted RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms