RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 APOHP02749 345 aaPredicted RBP5.08□□□□□ -1.6
USF3-204ENST00000496826 B4GALT1P15291 398 aa5.08□□□□□ -1.6
USF3-204ENST00000496826 SPINT3P49223 89 aa5.08□□□□□ -1.6
USF3-204ENST00000496826 RPS11P62280 158 aaKnown RBP eCLIP5.08□□□□□ -1.6
USF3-204ENST00000496826 DMRTC1Q5HYR2 192 aa5.08□□□□□ -1.6
USF3-204ENST00000496826 MRPL2Q5T653 305 aaKnown RBP5.08□□□□□ -1.6
USF3-204ENST00000496826 C1orf53Q5VUE5 145 aa5.08□□□□□ -1.6
USF3-204ENST00000496826 RNF165Q6ZSG1 346 aa5.08□□□□□ -1.6
USF3-204ENST00000496826 TRDCB7Z8K6 153 aa5.08□□□□□ -1.6
USF3-204ENST00000496826 F2Z2F3 143 aa5.08□□□□□ -1.6
USF3-204ENST00000496826 SPRY3O43610 288 aa5.08□□□□□ -1.6
USF3-204ENST00000496826 DCTDP32321 178 aa5.08□□□□□ -1.6
USF3-204ENST00000496826 NPC2P61916 151 aa5.08□□□□□ -1.6
USF3-204ENST00000496826 KLF17Q5JT82 389 aaPredicted RBP5.08□□□□□ -1.6
USF3-204ENST00000496826 SH2D6Q7Z4S9 175 aa5.08□□□□□ -1.6
USF3-204ENST00000496826 TMEM186Q96B77 213 aa5.08□□□□□ -1.6
USF3-204ENST00000496826 FAM90A7PA6NKC0 464 aa5.08□□□□□ -1.6
USF3-204ENST00000496826 FAM90A22PA8MWA6 464 aa5.08□□□□□ -1.6
USF3-204ENST00000496826 FAM90A12PA8MX19 464 aa5.08□□□□□ -1.6
USF3-204ENST00000496826 FAM90A23PA8MXZ1 464 aa5.08□□□□□ -1.6
USF3-204ENST00000496826 PRR33A8MZF0 331 aa5.08□□□□□ -1.6
USF3-204ENST00000496826 TMEM229AB2RXF0 380 aa5.08□□□□□ -1.6
USF3-204ENST00000496826 BCL2P10415 239 aa5.08□□□□□ -1.6
USF3-204ENST00000496826 RPL36AP83881 106 aaKnown RBP5.08□□□□□ -1.6
USF3-204ENST00000496826 OR5C1Q8NGR4 320 aa5.08□□□□□ -1.6
USF3-204ENST00000496826 RPL36ALQ969Q0 106 aaKnown RBP5.08□□□□□ -1.6
USF3-204ENST00000496826 IKZF4Q9H2S9 585 aa5.08□□□□□ -1.6
USF3-204ENST00000496826 SPEF2Q9C093 1822 aa5.08□□□□□ -1.6
USF3-204ENST00000496826 IGKV3D-11A0A0A0MRZ8 115 aa5.08□□□□□ -1.6
USF3-204ENST00000496826 IGKV3-11P04433 115 aa5.08□□□□□ -1.6
USF3-204ENST00000496826 KLK2P20151 261 aa5.08□□□□□ -1.6
USF3-204ENST00000496826 HSPE1P61604 102 aaKnown RBP5.08□□□□□ -1.6
USF3-204ENST00000496826 IL11RAQ14626 422 aa5.08□□□□□ -1.6
USF3-204ENST00000496826 TMEM179BQ7Z7N9 219 aa5.08□□□□□ -1.6
USF3-204ENST00000496826 CLEC4CQ8WTT0 213 aa5.08□□□□□ -1.6
USF3-204ENST00000496826 ARHGAP5-AS1Q96IT6 56 aa5.08□□□□□ -1.6
USF3-204ENST00000496826 CEP250Q9BV73 2442 aa5.08□□□□□ -1.6
USF3-204ENST00000496826 TCRBV7S3A2A0A539 114 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 FAM90A10PA6NDY2 464 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 FAM90A8PA6NJQ4 464 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 C15orf61A6NNL5 157 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 FAM90A13PP0C7W8 464 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 FAM90A24PP0C7X0 464 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 LY6G5CQ5SRR4 150 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 GTF3AQ92664 365 aaKnown RBP5.07□□□□□ -1.6
USF3-204ENST00000496826 MARVELD1Q9BSK0 173 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 SMIM30A4D0T7 59 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 HOXB1P14653 301 aaPredicted RBP5.07□□□□□ -1.6
USF3-204ENST00000496826 PDE6GP18545 87 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 RPL27AP46776 148 aaKnown RBP5.07□□□□□ -1.6
USF3-204ENST00000496826 GFRA1P56159 465 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 Q6ZNX1 250 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 BCDIN3DQ7Z5W3 292 aaKnown RBP5.07□□□□□ -1.6
USF3-204ENST00000496826 CCL17Q92583 94 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 VSTM2LQ96N03 204 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 CHCHD5Q9BSY4 110 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 CXCL10P02778 98 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 ZP1P60852 638 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 C6orf226Q5I0X4 101 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 C11orf87Q6NUJ2 197 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 Q6ZSR9 355 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 ATP5L2Q7Z4Y8 100 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 TNFRSF19Q9NS68 423 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 TMEM30AQ9NV96 361 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 RBPJLQ9UBG7 517 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 BICRAQ9NZM4 1560 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 FAM90A26D6RGX4 464 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 C3orf80F5H4A9 247 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 CLDN5O00501 218 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 RS1O15537 224 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 ANKRD39Q53RE8 183 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 AMER3Q8N944 861 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 SLC16A11Q8NCK7 471 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 COL5A2P05997 1499 aaPredicted RBP5.07□□□□□ -1.6
USF3-204ENST00000496826 A0A1W2PPC1 479 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 SBK3P0C264 359 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 RPS24P62847 133 aaKnown RBP5.07□□□□□ -1.6
USF3-204ENST00000496826 ZNF750Q32MQ0 723 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 DCAF10Q5QP82 559 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 ANKRD34AQ69YU3 496 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 VSIRQ9H7M9 311 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 IDI2-AS1Q9NZ38 188 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 ZMIZ1Q9ULJ6 1067 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 MEGF6O75095 1541 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 PRSS38A1L453 326 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 PSG1P11464 419 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 TAL2Q16559 108 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 GAGE2AQ6NT46 116 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 TRPT1Q86TN4 253 aaKnown RBP5.07□□□□□ -1.6
USF3-204ENST00000496826 PNKDQ8N490 385 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 A4GALTQ9NPC4 353 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 GPR52Q9Y2T5 361 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 ABCC3O15438 1527 aa5.07□□□□□ -1.6
USF3-204ENST00000496826 TIMM23O14925 209 aa5.06□□□□□ -1.6
USF3-204ENST00000496826 SRP19P09132 144 aaKnown RBP5.06□□□□□ -1.6
USF3-204ENST00000496826 ISL1P61371 349 aa5.06□□□□□ -1.6
USF3-204ENST00000496826 UBE2V2Q15819 145 aa5.06□□□□□ -1.6
USF3-204ENST00000496826 ZNF585BQ52M93 769 aa5.06□□□□□ -1.6
USF3-204ENST00000496826 LINC01545Q5VT33 79 aa5.06□□□□□ -1.6
USF3-204ENST00000496826 RSPO2Q6UXX9 243 aaPredicted RBP5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms