RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 HAND1O96004 215 aa13.87□□□□□ -0.19
CCDC88B-210ENST00000494566 CHRNA7P36544 502 aa13.87□□□□□ -0.19
CCDC88B-210ENST00000494566 OR3A1P47881 315 aa13.87□□□□□ -0.19
CCDC88B-210ENST00000494566 OR4F5Q8NH21 305 aa13.87□□□□□ -0.19
CCDC88B-210ENST00000494566 OR4F4Q96R69 305 aa13.87□□□□□ -0.19
CCDC88B-210ENST00000494566 PCGF1Q9BSM1 259 aa13.87□□□□□ -0.19
CCDC88B-210ENST00000494566 CLEC18AA5D8T8 446 aa13.87□□□□□ -0.19
CCDC88B-210ENST00000494566 ZNF729A6NN14 1252 aaPredicted RBP13.87□□□□□ -0.19
CCDC88B-210ENST00000494566 ZNF585BQ52M93 769 aa13.87□□□□□ -0.19
CCDC88B-210ENST00000494566 GCSAMLQ5JQS6 135 aa13.87□□□□□ -0.19
CCDC88B-210ENST00000494566 Q6ZT83 130 aa13.87□□□□□ -0.19
CCDC88B-210ENST00000494566 ZNF525Q8N782 197 aa13.87□□□□□ -0.19
CCDC88B-210ENST00000494566 CLEC18CQ8NCF0 446 aa13.87□□□□□ -0.19
CCDC88B-210ENST00000494566 OR52L2PQ8NGH6 319 aa13.87□□□□□ -0.19
CCDC88B-210ENST00000494566 CA5BP1Q8WTZ4 195 aa13.87□□□□□ -0.19
CCDC88B-210ENST00000494566 OPN3Q9H1Y3 402 aaPredicted RBP13.87□□□□□ -0.19
CCDC88B-210ENST00000494566 POLDIP2Q9Y2S7 368 aa13.87□□□□□ -0.19
CCDC88B-210ENST00000494566 ANKRD11Q6UB99 2663 aaPredicted RBP13.86□□□□□ -0.19
CCDC88B-210ENST00000494566 TRBV6-6A0A0A6YYG2 114 aa13.86□□□□□ -0.19
CCDC88B-210ENST00000494566 CLDN34H7C241 214 aa13.86□□□□□ -0.19
CCDC88B-210ENST00000494566 CD33P20138 364 aa13.86□□□□□ -0.19
CCDC88B-210ENST00000494566 GZMHP20718 246 aa13.86□□□□□ -0.19
CCDC88B-210ENST00000494566 S100GP29377 79 aa13.86□□□□□ -0.19
CCDC88B-210ENST00000494566 MDH2P40926 338 aaKnown RBP13.86□□□□□ -0.19
CCDC88B-210ENST00000494566 FAM3BP58499 235 aaPredicted RBP13.86□□□□□ -0.19
CCDC88B-210ENST00000494566 COL10A1Q03692 680 aa13.86□□□□□ -0.19
CCDC88B-210ENST00000494566 TFF3Q07654 80 aa13.86□□□□□ -0.19
CCDC88B-210ENST00000494566 SSX9Q7RTT3 188 aa13.86□□□□□ -0.19
CCDC88B-210ENST00000494566 RPP25LQ8N5L8 163 aaKnown RBP13.86□□□□□ -0.19
CCDC88B-210ENST00000494566 DRAM1Q8N682 238 aa13.86□□□□□ -0.19
CCDC88B-210ENST00000494566 OR4X1Q8NH49 305 aa13.86□□□□□ -0.19
CCDC88B-210ENST00000494566 HIST1H2BLQ99880 126 aa13.86□□□□□ -0.19
CCDC88B-210ENST00000494566 SH2D1BO14796 132 aa13.86□□□□□ -0.19
CCDC88B-210ENST00000494566 NDUFB7P17568 137 aa13.86□□□□□ -0.19
CCDC88B-210ENST00000494566 C1QL4Q86Z23 238 aa13.86□□□□□ -0.19
CCDC88B-210ENST00000494566 OR51G1Q8NGK1 321 aa13.86□□□□□ -0.19
CCDC88B-210ENST00000494566 GTF3AQ92664 365 aaKnown RBP13.86□□□□□ -0.19
CCDC88B-210ENST00000494566 TREM2Q9NZC2 230 aa13.86□□□□□ -0.19
CCDC88B-210ENST00000494566 A0A087X0M5 115 aa13.85□□□□□ -0.19
CCDC88B-210ENST00000494566 A0A1B0GX30 115 aa13.85□□□□□ -0.19
CCDC88B-210ENST00000494566 C1QTNF9BB2RNN3 333 aa13.85□□□□□ -0.19
CCDC88B-210ENST00000494566 HBE1P02100 147 aa13.85□□□□□ -0.19
CCDC88B-210ENST00000494566 ACSM6Q6P461 480 aa13.85□□□□□ -0.19
CCDC88B-210ENST00000494566 WDR31Q8NA23 367 aa13.85□□□□□ -0.19
CCDC88B-210ENST00000494566 MRGPRDQ8TDS7 321 aa13.85□□□□□ -0.19
CCDC88B-210ENST00000494566 DCTN5Q9BTE1 182 aa13.85□□□□□ -0.19
CCDC88B-210ENST00000494566 ASCL3Q9NQ33 180 aa13.85□□□□□ -0.19
CCDC88B-210ENST00000494566 A0A1B0GU03 582 aa13.85□□□□□ -0.19
CCDC88B-210ENST00000494566 TIMM8AO60220 97 aaPredicted RBP13.85□□□□□ -0.19
CCDC88B-210ENST00000494566 RAC2P15153 192 aa13.85□□□□□ -0.19
CCDC88B-210ENST00000494566 HOXC12P31275 282 aa13.85□□□□□ -0.19
CCDC88B-210ENST00000494566 BAXQ07812 192 aa13.85□□□□□ -0.19
CCDC88B-210ENST00000494566 SLC38A11Q08AI6 406 aa13.85□□□□□ -0.19
CCDC88B-210ENST00000494566 NCR3LG1Q68D85 454 aa13.85□□□□□ -0.19
CCDC88B-210ENST00000494566 ZNF66Q6ZN08 573 aa13.85□□□□□ -0.19
CCDC88B-210ENST00000494566 PLCE1Q9P212 2302 aa13.85□□□□□ -0.19
CCDC88B-210ENST00000494566 SMCO3A2RU48 225 aa13.84□□□□□ -0.19
CCDC88B-210ENST00000494566 IQCF6A8MYZ5 107 aa13.84□□□□□ -0.19
CCDC88B-210ENST00000494566 DFFBO76075 338 aa13.84□□□□□ -0.19
CCDC88B-210ENST00000494566 CECR9P0C854 216 aa13.84□□□□□ -0.19
CCDC88B-210ENST00000494566 IL2RGP31785 369 aa13.84□□□□□ -0.19
CCDC88B-210ENST00000494566 GABRA2P47869 451 aa13.84□□□□□ -0.19
CCDC88B-210ENST00000494566 SLC35E3Q7Z769 313 aa13.84□□□□□ -0.19
CCDC88B-210ENST00000494566 C11orf53Q8IXP5 236 aa13.84□□□□□ -0.19
CCDC88B-210ENST00000494566 C5orf30Q96GV9 206 aa13.84□□□□□ -0.19
CCDC88B-210ENST00000494566 FUT9Q9Y231 359 aa13.84□□□□□ -0.19
CCDC88B-210ENST00000494566 C12orf77C9JDV5 145 aa13.84□□□□□ -0.19
CCDC88B-210ENST00000494566 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.84□□□□□ -0.19
CCDC88B-210ENST00000494566 PTBP3O95758 552 aaKnown RBP13.84□□□□□ -0.19
CCDC88B-210ENST00000494566 SSTR5P35346 364 aa13.84□□□□□ -0.19
CCDC88B-210ENST00000494566 ZNF146Q15072 292 aa13.84□□□□□ -0.19
CCDC88B-210ENST00000494566 FGFRL1Q8N441 504 aa13.84□□□□□ -0.19
CCDC88B-210ENST00000494566 OR2D2Q9H210 308 aa13.84□□□□□ -0.19
CCDC88B-210ENST00000494566 SDF2L1Q9HCN8 221 aa13.84□□□□□ -0.19
CCDC88B-210ENST00000494566 PCNX1Q96RV3 2341 aa13.84□□□□□ -0.19
CCDC88B-210ENST00000494566 CSMD1Q96PZ7 3565 aa13.84□□□□□ -0.19
CCDC88B-210ENST00000494566 BTBD17A6NE02 478 aa13.84□□□□□ -0.19
CCDC88B-210ENST00000494566 CD81P60033 236 aa13.84□□□□□ -0.19
CCDC88B-210ENST00000494566 RPL30P62888 115 aaKnown RBP13.84□□□□□ -0.19
CCDC88B-210ENST00000494566 LURAP1LQ8IV03 231 aa13.84□□□□□ -0.19
CCDC88B-210ENST00000494566 ABHD14BQ96IU4 210 aa13.84□□□□□ -0.19
CCDC88B-210ENST00000494566 TAAR6Q96RI8 345 aa13.84□□□□□ -0.19
CCDC88B-210ENST00000494566 IGHG3P01860 377 aa13.83□□□□□ -0.2
CCDC88B-210ENST00000494566 ATG101Q9BSB4 218 aa13.83□□□□□ -0.2
CCDC88B-210ENST00000494566 TACC2O95359 2948 aa13.83□□□□□ -0.2
CCDC88B-210ENST00000494566 DUXBA0A1W2PPF3 345 aa13.83□□□□□ -0.2
CCDC88B-210ENST00000494566 XKRY2A2RUG3 117 aa13.83□□□□□ -0.2
CCDC88B-210ENST00000494566 PAGE4O60829 102 aa13.83□□□□□ -0.2
CCDC88B-210ENST00000494566 ZG16O60844 167 aa13.83□□□□□ -0.2
CCDC88B-210ENST00000494566 PIP4P1Q86T03 277 aa13.83□□□□□ -0.2
CCDC88B-210ENST00000494566 RPRMLQ8N4K4 120 aa13.83□□□□□ -0.2
CCDC88B-210ENST00000494566 KDF1Q8NAX2 398 aaPredicted RBP13.83□□□□□ -0.2
CCDC88B-210ENST00000494566 PTPRZ1P23471 2315 aaPredicted RBP13.83□□□□□ -0.2
CCDC88B-210ENST00000494566 ABCA1O95477 2261 aa13.82□□□□□ -0.2
CCDC88B-210ENST00000494566 A0A1B0GW64 132 aa13.82□□□□□ -0.2
CCDC88B-210ENST00000494566 CYB5R3P00387 301 aaPredicted RBP13.82□□□□□ -0.2
CCDC88B-210ENST00000494566 HIST1H1BP16401 226 aaKnown RBP13.82□□□□□ -0.2
CCDC88B-210ENST00000494566 INO80CQ6PI98 192 aaPredicted RBP13.82□□□□□ -0.2
CCDC88B-210ENST00000494566 DERL1Q9BUN8 251 aa13.82□□□□□ -0.2
CCDC88B-210ENST00000494566 TNCP24821 2201 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms