RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 PDPNQ86YL7 162 aa19.29■□□□□ 0.68
UPF3A-209ENST00000492270 CLCC1Q96S66 551 aa19.29■□□□□ 0.68
UPF3A-209ENST00000492270 DCSTAMPQ9H295 470 aa19.29■□□□□ 0.68
UPF3A-209ENST00000492270 TPSG1Q9NRR2 321 aa19.29■□□□□ 0.68
UPF3A-209ENST00000492270 SLC35D1Q9NTN3 355 aa19.29■□□□□ 0.68
UPF3A-209ENST00000492270 METTL1Q9UBP6 276 aaKnown RBP19.29■□□□□ 0.68
UPF3A-209ENST00000492270 GAB2Q9UQC2 676 aa19.29■□□□□ 0.68
UPF3A-209ENST00000492270 TRAV41A0A0B4J266 112 aa19.28■□□□□ 0.68
UPF3A-209ENST00000492270 J3QRK9 145 aa19.28■□□□□ 0.68
UPF3A-209ENST00000492270 OR5H8P0DN80 308 aa19.28■□□□□ 0.68
UPF3A-209ENST00000492270 CX3CL1P78423 397 aa19.28■□□□□ 0.68
UPF3A-209ENST00000492270 PITPNAQ00169 270 aa19.28■□□□□ 0.68
UPF3A-209ENST00000492270 ECSCRQ19T08 205 aa19.28■□□□□ 0.68
UPF3A-209ENST00000492270 RAX2Q96IS3 184 aa19.28■□□□□ 0.68
UPF3A-209ENST00000492270 RNF5Q99942 180 aa19.28■□□□□ 0.68
UPF3A-209ENST00000492270 SPATA2Q9UM82 520 aa19.28■□□□□ 0.68
UPF3A-209ENST00000492270 PTHLHP12272 177 aa19.27■□□□□ 0.68
UPF3A-209ENST00000492270 NFYAP23511 347 aaPredicted RBP19.27■□□□□ 0.68
UPF3A-209ENST00000492270 SLC6A1P30531 599 aa19.27■□□□□ 0.68
UPF3A-209ENST00000492270 CDX1P47902 265 aaPredicted RBP19.27■□□□□ 0.68
UPF3A-209ENST00000492270 FOXB2Q5VYV0 432 aa19.27■□□□□ 0.68
UPF3A-209ENST00000492270 P2RX4Q99571 388 aa19.27■□□□□ 0.68
UPF3A-209ENST00000492270 KLK15Q9H2R5 256 aa19.27■□□□□ 0.68
UPF3A-209ENST00000492270 A3GALT2U3KPV4 340 aa19.27■□□□□ 0.68
UPF3A-209ENST00000492270 CA2P00918 260 aa19.26■□□□□ 0.67
UPF3A-209ENST00000492270 MYCNOSP40205 109 aa19.26■□□□□ 0.67
UPF3A-209ENST00000492270 C19orf54Q5BKX5 351 aa19.26■□□□□ 0.67
UPF3A-209ENST00000492270 ZNF660Q6AZW8 331 aaPredicted RBP19.26■□□□□ 0.67
UPF3A-209ENST00000492270 BVESQ8NE79 360 aa19.26■□□□□ 0.67
UPF3A-209ENST00000492270 FLYWCH2Q96CP2 140 aaKnown RBP19.26■□□□□ 0.67
UPF3A-209ENST00000492270 RCC1LQ96I51 464 aaKnown RBP19.26■□□□□ 0.67
UPF3A-209ENST00000492270 TSNAXQ99598 290 aaKnown RBP19.26■□□□□ 0.67
UPF3A-209ENST00000492270 FAM103A1Q9BTL3 118 aaKnown RBP19.26■□□□□ 0.67
UPF3A-209ENST00000492270 ANXA10Q9UJ72 324 aa19.26■□□□□ 0.67
UPF3A-209ENST00000492270 SLC25A17O43808 307 aa19.25■□□□□ 0.67
UPF3A-209ENST00000492270 IGLV1-40P01703 118 aa19.25■□□□□ 0.67
UPF3A-209ENST00000492270 IGLV2-23P01705 113 aa19.25■□□□□ 0.67
UPF3A-209ENST00000492270 EGR2P11161 476 aaPredicted RBP19.25■□□□□ 0.67
UPF3A-209ENST00000492270 CNIH2Q6PI25 160 aa19.25■□□□□ 0.67
UPF3A-209ENST00000492270 GVQW1Q8N7I0 195 aa19.25■□□□□ 0.67
UPF3A-209ENST00000492270 MINDY2Q8NBR6 621 aa19.25■□□□□ 0.67
UPF3A-209ENST00000492270 MYOZ3Q8TDC0 251 aa19.25■□□□□ 0.67
UPF3A-209ENST00000492270 ABHD5Q8WTS1 349 aa19.25■□□□□ 0.67
UPF3A-209ENST00000492270 FUNDC2Q9BWH2 189 aa19.25■□□□□ 0.67
UPF3A-209ENST00000492270 LINC00473A8K010 186 aa19.24■□□□□ 0.67
UPF3A-209ENST00000492270 SOX15O60248 233 aa19.24■□□□□ 0.67
UPF3A-209ENST00000492270 SPDEFO95238 335 aa19.24■□□□□ 0.67
UPF3A-209ENST00000492270 DUTP33316 252 aaKnown RBP19.24■□□□□ 0.67
UPF3A-209ENST00000492270 CRIP2P52943 208 aaPredicted RBP19.24■□□□□ 0.67
UPF3A-209ENST00000492270 NCS1P62166 190 aa19.24■□□□□ 0.67
UPF3A-209ENST00000492270 KIAA0141Q14154 515 aaPredicted RBP19.24■□□□□ 0.67
UPF3A-209ENST00000492270 CROCCP3Q8IVE0 287 aa19.24■□□□□ 0.67
UPF3A-209ENST00000492270 AUNIPQ9H7T9 357 aa19.24■□□□□ 0.67
UPF3A-209ENST00000492270 OR2W1Q9Y3N9 320 aa19.24■□□□□ 0.67
UPF3A-209ENST00000492270 A0A0A6YYH2 397 aa19.23■□□□□ 0.67
UPF3A-209ENST00000492270 IGKV1D-13A0A0B4J2D9 117 aa19.23■□□□□ 0.67
UPF3A-209ENST00000492270 A0A1W2PN81 502 aa19.23■□□□□ 0.67
UPF3A-209ENST00000492270 A6NJ64 397 aa19.23■□□□□ 0.67
UPF3A-209ENST00000492270 CCL24O00175 119 aa19.23■□□□□ 0.67
UPF3A-209ENST00000492270 FCER2P06734 321 aa19.23■□□□□ 0.67
UPF3A-209ENST00000492270 CTXN2P0C2S0 81 aa19.23■□□□□ 0.67
UPF3A-209ENST00000492270 SMIM18P0DKX4 95 aa19.23■□□□□ 0.67
UPF3A-209ENST00000492270 IGKV1-13P0DP09 117 aa19.23■□□□□ 0.67
UPF3A-209ENST00000492270 CHRNA7P36544 502 aa19.23■□□□□ 0.67
UPF3A-209ENST00000492270 BEST4Q8NFU0 473 aa19.23■□□□□ 0.67
UPF3A-209ENST00000492270 CASTOR1Q8WTX7 329 aa19.23■□□□□ 0.67
UPF3A-209ENST00000492270 DDB2Q92466 427 aa19.23■□□□□ 0.67
UPF3A-209ENST00000492270 HARBI1Q96MB7 349 aa19.23■□□□□ 0.67
UPF3A-209ENST00000492270 GNB4Q9HAV0 340 aa19.23■□□□□ 0.67
UPF3A-209ENST00000492270 DIABLOQ9NR28 239 aa19.23■□□□□ 0.67
UPF3A-209ENST00000492270 NECAP2Q9NVZ3 263 aa19.23■□□□□ 0.67
UPF3A-209ENST00000492270 AURKAIP1Q9NWT8 199 aaPredicted RBP19.23■□□□□ 0.67
UPF3A-209ENST00000492270 NUBP2Q9Y5Y2 271 aa19.23■□□□□ 0.67
UPF3A-209ENST00000492270 TMEM127O75204 238 aa19.22■□□□□ 0.67
UPF3A-209ENST00000492270 HLA-DQB1P01920 261 aa19.22■□□□□ 0.67
UPF3A-209ENST00000492270 LUMP51884 338 aaPredicted RBP19.22■□□□□ 0.67
UPF3A-209ENST00000492270 RAB25P57735 213 aa19.22■□□□□ 0.67
UPF3A-209ENST00000492270 TMEM65Q6PI78 240 aa19.22■□□□□ 0.67
UPF3A-209ENST00000492270 ZNF645Q8N7E2 425 aa19.22■□□□□ 0.67
UPF3A-209ENST00000492270 ZNF491Q8N8L2 437 aa19.22■□□□□ 0.67
UPF3A-209ENST00000492270 OR13F1Q8NGS4 319 aa19.22■□□□□ 0.67
UPF3A-209ENST00000492270 C4orf3Q8WVX3 66 aa19.22■□□□□ 0.67
UPF3A-209ENST00000492270 ARPC1BO15143 372 aaKnown RBP19.21■□□□□ 0.67
UPF3A-209ENST00000492270 VBP1P61758 197 aa19.21■□□□□ 0.67
UPF3A-209ENST00000492270 SSBP2P81877 361 aaPredicted RBP19.21■□□□□ 0.67
UPF3A-209ENST00000492270 PJVKQ0ZLH3 352 aa19.21■□□□□ 0.67
UPF3A-209ENST00000492270 TMEM177Q53S58 311 aa19.21■□□□□ 0.67
UPF3A-209ENST00000492270 UBE2NLQ5JXB2 153 aa19.21■□□□□ 0.67
UPF3A-209ENST00000492270 ZNF562Q6V9R5 426 aa19.21■□□□□ 0.67
UPF3A-209ENST00000492270 PPP1R27Q86WC6 154 aa19.21■□□□□ 0.67
UPF3A-209ENST00000492270 HOGA1Q86XE5 327 aa19.21■□□□□ 0.67
UPF3A-209ENST00000492270 SAMD12Q8N8I0 201 aa19.21■□□□□ 0.67
UPF3A-209ENST00000492270 OR5B12Q96R08 314 aa19.21■□□□□ 0.67
UPF3A-209ENST00000492270 MEIS3P1A6NDR6 274 aa19.2■□□□□ 0.66
UPF3A-209ENST00000492270 SRRM4A7MD48 611 aaKnown RBP19.2■□□□□ 0.66
UPF3A-209ENST00000492270 SHOXO15266 292 aa19.2■□□□□ 0.66
UPF3A-209ENST00000492270 DUS4LO95620 317 aaKnown RBP19.2■□□□□ 0.66
UPF3A-209ENST00000492270 IGLV2-14P01704 120 aa19.2■□□□□ 0.66
UPF3A-209ENST00000492270 CRYGBP07316 175 aa19.2■□□□□ 0.66
UPF3A-209ENST00000492270 HOXD3P31249 432 aaPredicted RBP19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms