RNA–Protein interactions for RNA: ENST00000489816.5

BRD9-208, Transcript of bromodomain containing 9, human

TSL 1 (best)

Gene BRD9, Length 3,170 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRD9-208	ENST00000489816	LOC102723971	A0A1B0GUV8	181 aa		13.12	□□□□□ -0.31
BRD9-208	ENST00000489816	IGKV3-15	P01624	115 aa		13.12	□□□□□ -0.31
BRD9-208	ENST00000489816	LRRC75B	Q2VPJ9	315 aa		13.12	□□□□□ -0.31
BRD9-208	ENST00000489816	DUX4L9	Q6RFH8	374 aa	Predicted RBP	13.12	□□□□□ -0.31
BRD9-208	ENST00000489816	IFT22	Q9H7X7	185 aa		13.12	□□□□□ -0.31
BRD9-208	ENST00000489816	IGHV2OR16-5	A0A0B4J2B6	119 aa		13.12	□□□□□ -0.31
BRD9-208	ENST00000489816	BCL2	P10415	239 aa		13.12	□□□□□ -0.31
BRD9-208	ENST00000489816	FOLR2	P14207	255 aa		13.12	□□□□□ -0.31
BRD9-208	ENST00000489816	ZNF718	Q3SXZ3	478 aa		13.12	□□□□□ -0.31
BRD9-208	ENST00000489816	SDSL	Q96GA7	329 aa		13.12	□□□□□ -0.31
BRD9-208	ENST00000489816	CXXC4	Q9H2H0	198 aa		13.12	□□□□□ -0.31
BRD9-208	ENST00000489816	LRBA	P50851	2863 aa		13.11	□□□□□ -0.31
BRD9-208	ENST00000489816	OOEP	A6NGQ2	149 aa		13.11	□□□□□ -0.31
BRD9-208	ENST00000489816	CLN5	O75503	358 aa		13.11	□□□□□ -0.31
BRD9-208	ENST00000489816	HBE1	P02100	147 aa		13.11	□□□□□ -0.31
BRD9-208	ENST00000489816	HSPB1	P04792	205 aa	Known RBP	13.11	□□□□□ -0.31
BRD9-208	ENST00000489816	FGF7	P21781	194 aa		13.11	□□□□□ -0.31
BRD9-208	ENST00000489816	TUBG1	P23258	451 aa		13.11	□□□□□ -0.31
BRD9-208	ENST00000489816	PRDX2	P32119	198 aa		13.11	□□□□□ -0.31
BRD9-208	ENST00000489816	RNF212	Q495C1	297 aa		13.11	□□□□□ -0.31
BRD9-208	ENST00000489816	WDR25	Q64LD2	544 aa	Predicted RBP	13.11	□□□□□ -0.31
BRD9-208	ENST00000489816	FAM90A2P	Q658T7	463 aa		13.11	□□□□□ -0.31
BRD9-208	ENST00000489816	DTD1	Q8TEA8	209 aa		13.11	□□□□□ -0.31
BRD9-208	ENST00000489816	DSCAM	O60469	2012 aa		13.11	□□□□□ -0.31
BRD9-208	ENST00000489816	LRRC30	A6NM36	301 aa		13.11	□□□□□ -0.31
BRD9-208	ENST00000489816	ZNF737	O75373	536 aa		13.11	□□□□□ -0.31
BRD9-208	ENST00000489816	CEACAM1	P13688	526 aa		13.11	□□□□□ -0.31
BRD9-208	ENST00000489816	ADIRF	Q15847	76 aa		13.11	□□□□□ -0.31
BRD9-208	ENST00000489816	DKK4	Q9UBT3	224 aa		13.11	□□□□□ -0.31
BRD9-208	ENST00000489816	SH3BGRL2	Q9UJC5	107 aa		13.11	□□□□□ -0.31
BRD9-208	ENST00000489816	BTBD17	A6NE02	478 aa		13.1	□□□□□ -0.31
BRD9-208	ENST00000489816		K7EM74	188 aa		13.1	□□□□□ -0.31
BRD9-208	ENST00000489816	PROP1	O75360	226 aa		13.1	□□□□□ -0.31
BRD9-208	ENST00000489816	IFNA4	P05014	189 aa		13.1	□□□□□ -0.31
BRD9-208	ENST00000489816	MOGAT3	Q86VF5	341 aa		13.1	□□□□□ -0.31
BRD9-208	ENST00000489816	TMEM204	Q9BSN7	226 aa		13.1	□□□□□ -0.31
BRD9-208	ENST00000489816	TUBA4B	Q9H853	241 aa		13.1	□□□□□ -0.31
BRD9-208	ENST00000489816	UNKL	Q9H9P5	680 aa	Known RBP	13.1	□□□□□ -0.31
BRD9-208	ENST00000489816	PLXNB1	O43157	2135 aa		13.1	□□□□□ -0.31
BRD9-208	ENST00000489816	CSMD1	Q96PZ7	3565 aa		13.1	□□□□□ -0.31
BRD9-208	ENST00000489816	NPIPB11	E5RHQ5	1161 aa		13.1	□□□□□ -0.31
BRD9-208	ENST00000489816	RTP5	Q14D33	572 aa		13.1	□□□□□ -0.31
BRD9-208	ENST00000489816	KHDC3L	Q587J8	217 aa		13.1	□□□□□ -0.31
BRD9-208	ENST00000489816	SPNS3	Q6ZMD2	512 aa		13.1	□□□□□ -0.31
BRD9-208	ENST00000489816	TGIF2LY	Q8IUE0	185 aa		13.1	□□□□□ -0.31
BRD9-208	ENST00000489816	STARD4	Q96DR4	205 aa		13.1	□□□□□ -0.31
BRD9-208	ENST00000489816	QTRT1	Q9BXR0	403 aa	Known RBP	13.1	□□□□□ -0.31
BRD9-208	ENST00000489816	ASCL3	Q9NQ33	180 aa		13.1	□□□□□ -0.31
BRD9-208	ENST00000489816	CTNNBIP1	Q9NSA3	81 aa	Predicted RBP	13.1	□□□□□ -0.31
BRD9-208	ENST00000489816	TRAV3	A0A0B4J244	114 aa		13.1	□□□□□ -0.31
BRD9-208	ENST00000489816	TRAV17	A0A0B4J275	112 aa		13.1	□□□□□ -0.31
BRD9-208	ENST00000489816	GALR2	O43603	387 aa	Predicted RBP	13.1	□□□□□ -0.31
BRD9-208	ENST00000489816	OPN1MW	P04001	364 aa		13.1	□□□□□ -0.31
BRD9-208	ENST00000489816	OPN1MW2	P0DN77	364 aa		13.1	□□□□□ -0.31
BRD9-208	ENST00000489816	OPN1MW3	P0DN78	364 aa		13.1	□□□□□ -0.31
BRD9-208	ENST00000489816	UBE2G2	P60604	165 aa		13.1	□□□□□ -0.31
BRD9-208	ENST00000489816	C22orf34	Q6ZV56	151 aa		13.1	□□□□□ -0.31
BRD9-208	ENST00000489816	ZCCHC24	Q8N2G6	241 aa	Known RBP	13.1	□□□□□ -0.31
BRD9-208	ENST00000489816	SARAF	Q96BY9	339 aa		13.1	□□□□□ -0.31
BRD9-208	ENST00000489816	MARCH11	A6NNE9	402 aa		13.09	□□□□□ -0.31
BRD9-208	ENST00000489816	TNFSF13	O75888	250 aa		13.09	□□□□□ -0.31
BRD9-208	ENST00000489816	ACSF3	Q4G176	576 aa	Predicted RBP	13.09	□□□□□ -0.31
BRD9-208	ENST00000489816	FFAR4	Q5NUL3	377 aa		13.09	□□□□□ -0.31
BRD9-208	ENST00000489816	PROCR	Q9UNN8	238 aa		13.09	□□□□□ -0.31
BRD9-208	ENST00000489816	MED13L	Q71F56	2210 aa		13.09	□□□□□ -0.31
BRD9-208	ENST00000489816	TRBV23-1	A0A0A0MS06	115 aa		13.09	□□□□□ -0.31
BRD9-208	ENST00000489816		M0R1X1	148 aa		13.09	□□□□□ -0.31
BRD9-208	ENST00000489816	AP4M1	O00189	453 aa		13.09	□□□□□ -0.31
BRD9-208	ENST00000489816	OR9G9	P0C7N8	305 aa		13.09	□□□□□ -0.31
BRD9-208	ENST00000489816	CATR1	Q13166	79 aa		13.09	□□□□□ -0.31
BRD9-208	ENST00000489816	SMIM21	Q3B7S5	101 aa		13.09	□□□□□ -0.31
BRD9-208	ENST00000489816	CDPF1	Q6NVV7	123 aa		13.09	□□□□□ -0.31
BRD9-208	ENST00000489816	SEM1	Q6ZVN7	128 aa		13.09	□□□□□ -0.31
BRD9-208	ENST00000489816	OR10P1	Q8NGE3	313 aa		13.09	□□□□□ -0.31
BRD9-208	ENST00000489816	CA5BP1	Q8WTZ4	195 aa		13.09	□□□□□ -0.31
BRD9-208	ENST00000489816	OR2V2	Q96R30	315 aa		13.09	□□□□□ -0.31
BRD9-208	ENST00000489816	HINT2	Q9BX68	163 aa		13.09	□□□□□ -0.31
BRD9-208	ENST00000489816	HES4	Q9HCC6	221 aa		13.09	□□□□□ -0.31
BRD9-208	ENST00000489816	IGKV1D-17	A0A075B6S4	117 aa		13.08	□□□□□ -0.32
BRD9-208	ENST00000489816	LINC00587	B1AMM8	73 aa		13.08	□□□□□ -0.32
BRD9-208	ENST00000489816	UBE2C	O00762	179 aa		13.08	□□□□□ -0.32
BRD9-208	ENST00000489816	IGHG3	P01860	377 aa		13.08	□□□□□ -0.32
BRD9-208	ENST00000489816	CRYAA	P02489	173 aa		13.08	□□□□□ -0.32
BRD9-208	ENST00000489816	ZNF134	P52741	427 aa		13.08	□□□□□ -0.32
BRD9-208	ENST00000489816	MSMO1	Q15800	293 aa		13.08	□□□□□ -0.32
BRD9-208	ENST00000489816	S100PBP	Q96BU1	408 aa		13.08	□□□□□ -0.32
BRD9-208	ENST00000489816	SNRNP40	Q96DI7	357 aa	Known RBP	13.08	□□□□□ -0.32
BRD9-208	ENST00000489816	SMIM7	Q9BQ49	75 aa		13.08	□□□□□ -0.32
BRD9-208	ENST00000489816	DOK5	Q9P104	306 aa		13.08	□□□□□ -0.32
BRD9-208	ENST00000489816	ZNRD1	Q9P1U0	126 aa		13.08	□□□□□ -0.32
BRD9-208	ENST00000489816	TRAV38-1	A0A0B4J264	116 aa		13.08	□□□□□ -0.32
BRD9-208	ENST00000489816		A0A1B0GW64	132 aa		13.08	□□□□□ -0.32
BRD9-208	ENST00000489816	RNF212B	A8MTL3	300 aa		13.08	□□□□□ -0.32
BRD9-208	ENST00000489816	PRR33	A8MZF0	331 aa		13.08	□□□□□ -0.32
BRD9-208	ENST00000489816	SLC25A6	P12236	298 aa		13.08	□□□□□ -0.32
BRD9-208	ENST00000489816	GPR12	P47775	334 aa		13.08	□□□□□ -0.32
BRD9-208	ENST00000489816	SP5	Q6BEB4	398 aa	Predicted RBP	13.08	□□□□□ -0.32
BRD9-208	ENST00000489816	SLC35E4	Q6ICL7	350 aa		13.08	□□□□□ -0.32
BRD9-208	ENST00000489816	OR10G4	Q8NGN3	311 aa		13.08	□□□□□ -0.32
BRD9-208	ENST00000489816	OR10G9	Q8NGN4	311 aa		13.08	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms