RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 TMEM186Q96B77 213 aa17.65■□□□□ 0.42
SMC4-221ENST00000489573 MBD6Q96DN6 1003 aa17.65■□□□□ 0.42
SMC4-221ENST00000489573 PRELID3BQ9Y3B1 194 aa17.65■□□□□ 0.42
SMC4-221ENST00000489573 NAV2Q8IVL1 2488 aa17.64■□□□□ 0.42
SMC4-221ENST00000489573 RAMP3O60896 148 aa17.64■□□□□ 0.41
SMC4-221ENST00000489573 KIR2DS2P43631 304 aa17.64■□□□□ 0.41
SMC4-221ENST00000489573 ZNF137PP52743 207 aa17.64■□□□□ 0.41
SMC4-221ENST00000489573 BRWD1-AS2P59051 145 aa17.64■□□□□ 0.41
SMC4-221ENST00000489573 HLA-DRB5Q30154 266 aa17.64■□□□□ 0.41
SMC4-221ENST00000489573 BEND2Q8NDZ0 799 aa17.64■□□□□ 0.41
SMC4-221ENST00000489573 DDB2Q92466 427 aa17.64■□□□□ 0.41
SMC4-221ENST00000489573 HYLS1Q96M11 299 aa17.64■□□□□ 0.41
SMC4-221ENST00000489573 SIRT7Q9NRC8 400 aa17.64■□□□□ 0.41
SMC4-221ENST00000489573 MMP26Q9NRE1 261 aa17.64■□□□□ 0.41
SMC4-221ENST00000489573 COMMD9Q9P000 198 aa17.64■□□□□ 0.41
SMC4-221ENST00000489573 IGLV1-47P01700 117 aa17.63■□□□□ 0.41
SMC4-221ENST00000489573 PRB3Q04118 309 aaPredicted RBP17.63■□□□□ 0.41
SMC4-221ENST00000489573 ZNF816Q0VGE8 651 aaPredicted RBP17.63■□□□□ 0.41
SMC4-221ENST00000489573 PNKDQ8N490 385 aa17.63■□□□□ 0.41
SMC4-221ENST00000489573 PPP1R1CQ8WVI7 109 aa17.63■□□□□ 0.41
SMC4-221ENST00000489573 SPIN2AQ99865 258 aa17.63■□□□□ 0.41
SMC4-221ENST00000489573 SPIN2BQ9BPZ2 258 aa17.63■□□□□ 0.41
SMC4-221ENST00000489573 SPG11Q96JI7 2443 aa17.63■□□□□ 0.41
SMC4-221ENST00000489573 FCGR3BO75015 233 aa17.62■□□□□ 0.41
SMC4-221ENST00000489573 USF1P22415 310 aaPredicted RBP17.62■□□□□ 0.41
SMC4-221ENST00000489573 FGL1Q08830 312 aa17.62■□□□□ 0.41
SMC4-221ENST00000489573 NMSQ5H8A3 153 aa17.62■□□□□ 0.41
SMC4-221ENST00000489573 ZNF383Q8NA42 475 aa17.62■□□□□ 0.41
SMC4-221ENST00000489573 ZBTB8BQ8NAP8 495 aaPredicted RBP17.62■□□□□ 0.41
SMC4-221ENST00000489573 RNASE11Q8TAA1 199 aaKnown RBP17.62■□□□□ 0.41
SMC4-221ENST00000489573 SIRPDQ9H106 197 aa17.62■□□□□ 0.41
SMC4-221ENST00000489573 HEXA-AS1Q9H8Q6 139 aa17.62■□□□□ 0.41
SMC4-221ENST00000489573 UNKLQ9H9P5 680 aaKnown RBP17.62■□□□□ 0.41
SMC4-221ENST00000489573 LPAR2Q9HBW0 351 aa17.62■□□□□ 0.41
SMC4-221ENST00000489573 GSKIPQ9P0R6 139 aa17.62■□□□□ 0.41
SMC4-221ENST00000489573 FBN2P35556 2912 aa17.62■□□□□ 0.41
SMC4-221ENST00000489573 RBFOX2O43251 390 aaKnown RBP eCLIP17.62■□□□□ 0.413e-8■■■■■ 54.1
SMC4-221ENST00000489573 S1PR2O95136 353 aa17.62■□□□□ 0.41
SMC4-221ENST00000489573 AKR1C2P52895 323 aa17.62■□□□□ 0.41
SMC4-221ENST00000489573 DVL1P1P54792 670 aaPredicted RBP17.62■□□□□ 0.41
SMC4-221ENST00000489573 LRRC37A5PQ49AS3 106 aa17.62■□□□□ 0.41
SMC4-221ENST00000489573 VMO1Q7Z5L0 202 aa17.62■□□□□ 0.41
SMC4-221ENST00000489573 OR11H4Q8NGC9 324 aa17.62■□□□□ 0.41
SMC4-221ENST00000489573 LSM10Q969L4 123 aaKnown RBP17.62■□□□□ 0.41
SMC4-221ENST00000489573 ST6GALNAC6Q969X2 333 aa17.62■□□□□ 0.41
SMC4-221ENST00000489573 AMMECR1Q9Y4X0 333 aaPredicted RBP17.62■□□□□ 0.41
SMC4-221ENST00000489573 TRAV14DV4A0A0A6YYC5 116 aa17.61■□□□□ 0.41
SMC4-221ENST00000489573 ATG12O94817 140 aa17.61■□□□□ 0.41
SMC4-221ENST00000489573 CT45A6P0DMU7 189 aa17.61■□□□□ 0.41
SMC4-221ENST00000489573 CT45A5P0DMU8 189 aa17.61■□□□□ 0.41
SMC4-221ENST00000489573 CT45A7P0DMV0 189 aa17.61■□□□□ 0.41
SMC4-221ENST00000489573 IL15RAQ13261 267 aa17.61■□□□□ 0.41
SMC4-221ENST00000489573 OR11H6Q8NGC7 330 aa17.61■□□□□ 0.41
SMC4-221ENST00000489573 MRPL20Q9BYC9 149 aaKnown RBP17.61■□□□□ 0.41
SMC4-221ENST00000489573 IGKV1-5P01602 117 aa17.6■□□□□ 0.41
SMC4-221ENST00000489573 Q5PR19 223 aa17.6■□□□□ 0.41
SMC4-221ENST00000489573 THOC7Q6I9Y2 204 aaKnown RBP17.6■□□□□ 0.41
SMC4-221ENST00000489573 HCP5Q6MZN7 132 aa17.6■□□□□ 0.41
SMC4-221ENST00000489573 OR4P4Q8NGL7 312 aa17.6■□□□□ 0.41
SMC4-221ENST00000489573 OR4S2Q8NH73 311 aa17.6■□□□□ 0.41
SMC4-221ENST00000489573 RRNAD1Q96FB5 475 aaKnown RBP17.6■□□□□ 0.41
SMC4-221ENST00000489573 PLEKHA2Q9HB19 425 aa17.6■□□□□ 0.41
SMC4-221ENST00000489573 ARHGAP32A7KAX9 2087 aa17.59■□□□□ 0.41
SMC4-221ENST00000489573 A0A0G2JRQ6 117 aa17.59■□□□□ 0.41
SMC4-221ENST00000489573 BUB1B-PAK6H3BSN5 160 aa17.59■□□□□ 0.41
SMC4-221ENST00000489573 HPRT1P00492 218 aa17.59■□□□□ 0.41
SMC4-221ENST00000489573 MMP9P14780 707 aa17.59■□□□□ 0.41
SMC4-221ENST00000489573 PSMB6P28072 239 aa17.59■□□□□ 0.41
SMC4-221ENST00000489573 KLRD1Q13241 179 aa17.59■□□□□ 0.41
SMC4-221ENST00000489573 TGIF2LXQ8IUE1 241 aa17.59■□□□□ 0.41
SMC4-221ENST00000489573 GPR146Q96CH1 333 aa17.59■□□□□ 0.41
SMC4-221ENST00000489573 INSIG2Q9Y5U4 225 aa17.59■□□□□ 0.41
SMC4-221ENST00000489573 TOX4O94842 621 aa17.58■□□□□ 0.41
SMC4-221ENST00000489573 MPC2O95563 127 aa17.58■□□□□ 0.41
SMC4-221ENST00000489573 ARG1P05089 322 aa17.58■□□□□ 0.41
SMC4-221ENST00000489573 SLC25A6P12236 298 aa17.58■□□□□ 0.41
SMC4-221ENST00000489573 HOXB4P17483 251 aaPredicted RBP17.58■□□□□ 0.41
SMC4-221ENST00000489573 REG1BP48304 166 aa17.58■□□□□ 0.41
SMC4-221ENST00000489573 DIAPH2-AS1Q14236 149 aa17.58■□□□□ 0.41
SMC4-221ENST00000489573 GRPEL2Q8TAA5 225 aa17.58■□□□□ 0.41
SMC4-221ENST00000489573 SLC35D1Q9NTN3 355 aa17.58■□□□□ 0.41
SMC4-221ENST00000489573 MMP24Q9Y5R2 645 aa17.58■□□□□ 0.41
SMC4-221ENST00000489573 A0A096LNT2 108 aa17.57■□□□□ 0.4
SMC4-221ENST00000489573 ODF3BA8MYP8 253 aa17.57■□□□□ 0.4
SMC4-221ENST00000489573 EPHA1P21709 976 aa17.57■□□□□ 0.4
SMC4-221ENST00000489573 G6PCP35575 357 aa17.57■□□□□ 0.4
SMC4-221ENST00000489573 TAGLNQ01995 201 aaKnown RBP17.57■□□□□ 0.4
SMC4-221ENST00000489573 RAB32Q13637 225 aa17.57■□□□□ 0.4
SMC4-221ENST00000489573 RTL8BQ17RB0 113 aa17.57■□□□□ 0.4
SMC4-221ENST00000489573 C11orf87Q6NUJ2 197 aa17.57■□□□□ 0.4
SMC4-221ENST00000489573 FAM219AQ8IW50 185 aa17.57■□□□□ 0.4
SMC4-221ENST00000489573 OR4D5Q8NGN0 318 aa17.57■□□□□ 0.4
SMC4-221ENST00000489573 NABP2Q9BQ15 211 aa17.57■□□□□ 0.4
SMC4-221ENST00000489573 PCGF1Q9BSM1 259 aa17.57■□□□□ 0.4
SMC4-221ENST00000489573 CRYBG3Q68DQ2 2970 aa17.57■□□□□ 0.4
SMC4-221ENST00000489573 FXYD6-FXYD2A0A087WZ82 144 aa17.57■□□□□ 0.4
SMC4-221ENST00000489573 A0A1B0GU03 582 aa17.57■□□□□ 0.4
SMC4-221ENST00000489573 KRASP01116 189 aa17.57■□□□□ 0.4
SMC4-221ENST00000489573 APOA2P02652 100 aa17.57■□□□□ 0.4
SMC4-221ENST00000489573 SLC25A4P12235 298 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms