RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 CT45A7P0DMV0 189 aa11.2□□□□□ -0.62
C9orf3-221ENST00000489562 PI3P19957 117 aa11.2□□□□□ -0.62
C9orf3-221ENST00000489562 CD1BP29016 333 aa11.2□□□□□ -0.62
C9orf3-221ENST00000489562 RAB13P51153 203 aa11.2□□□□□ -0.62
C9orf3-221ENST00000489562 CBX3Q13185 183 aa11.2□□□□□ -0.62
C9orf3-221ENST00000489562 PLET1Q6UQ28 207 aa11.2□□□□□ -0.62
C9orf3-221ENST00000489562 MOB3BQ86TA1 216 aa11.2□□□□□ -0.62
C9orf3-221ENST00000489562 DYNAPQ8N1N2 210 aa11.2□□□□□ -0.62
C9orf3-221ENST00000489562 OR5AN1Q8NGI8 311 aa11.2□□□□□ -0.62
C9orf3-221ENST00000489562 RTBDNQ9BSG5 229 aaPredicted RBP11.2□□□□□ -0.62
C9orf3-221ENST00000489562 C20orf85Q9H1P6 137 aa11.2□□□□□ -0.62
C9orf3-221ENST00000489562 OCEL1Q9H607 264 aa11.2□□□□□ -0.62
C9orf3-221ENST00000489562 FAM212BQ9NTI7 297 aaPredicted RBP11.2□□□□□ -0.62
C9orf3-221ENST00000489562 LIN7CQ9NUP9 197 aaKnown RBP11.2□□□□□ -0.62
C9orf3-221ENST00000489562 NUDT15Q9NV35 164 aa11.2□□□□□ -0.62
C9orf3-221ENST00000489562 NSD1Q96L73 2696 aaPredicted RBP11.19□□□□□ -0.62
C9orf3-221ENST00000489562 INAFM1C9JVW0 142 aa11.19□□□□□ -0.62
C9orf3-221ENST00000489562 TIMM23O14925 209 aa11.19□□□□□ -0.62
C9orf3-221ENST00000489562 ARPC1BO15143 372 aaKnown RBP11.19□□□□□ -0.62
C9orf3-221ENST00000489562 MPPED1O15442 326 aa11.19□□□□□ -0.62
C9orf3-221ENST00000489562 TNFSF12O43508 249 aa11.19□□□□□ -0.62
C9orf3-221ENST00000489562 F2RP25116 425 aa11.19□□□□□ -0.62
C9orf3-221ENST00000489562 RAG2P55895 527 aa11.19□□□□□ -0.62
C9orf3-221ENST00000489562 RTL8BQ17RB0 113 aa11.19□□□□□ -0.62
C9orf3-221ENST00000489562 TUSC1Q2TAM9 212 aa11.19□□□□□ -0.62
C9orf3-221ENST00000489562 LRRC75BQ2VPJ9 315 aa11.19□□□□□ -0.62
C9orf3-221ENST00000489562 DEFB112Q30KQ8 113 aa11.19□□□□□ -0.62
C9orf3-221ENST00000489562 TMEM128Q5BJH2 165 aa11.19□□□□□ -0.62
C9orf3-221ENST00000489562 DHRS7BQ6IAN0 325 aaPredicted RBP11.19□□□□□ -0.62
C9orf3-221ENST00000489562 Q71RC1 249 aaPredicted RBP11.19□□□□□ -0.62
C9orf3-221ENST00000489562 TMED4Q7Z7H5 227 aa11.19□□□□□ -0.62
C9orf3-221ENST00000489562 TBC1D26Q86UD7 250 aa11.19□□□□□ -0.62
C9orf3-221ENST00000489562 PDPNQ86YL7 162 aa11.19□□□□□ -0.62
C9orf3-221ENST00000489562 SGPP2Q8IWX5 399 aa11.19□□□□□ -0.62
C9orf3-221ENST00000489562 BCL6BQ8N143 479 aaPredicted RBP11.19□□□□□ -0.62
C9orf3-221ENST00000489562 ZNF383Q8NA42 475 aa11.19□□□□□ -0.62
C9orf3-221ENST00000489562 DRAXINQ8NBI3 349 aaPredicted RBP11.19□□□□□ -0.62
C9orf3-221ENST00000489562 OR51H1Q8NH63 302 aa11.19□□□□□ -0.62
C9orf3-221ENST00000489562 CD300LFQ8TDQ1 290 aa11.19□□□□□ -0.62
C9orf3-221ENST00000489562 TCTEX1D2Q8WW35 142 aa11.19□□□□□ -0.62
C9orf3-221ENST00000489562 DDB2Q92466 427 aa11.19□□□□□ -0.62
C9orf3-221ENST00000489562 CFHR4Q92496 578 aa11.19□□□□□ -0.62
C9orf3-221ENST00000489562 ZDHHC16Q969W1 377 aa11.19□□□□□ -0.62
C9orf3-221ENST00000489562 ALX4Q9H161 411 aaPredicted RBP11.19□□□□□ -0.62
C9orf3-221ENST00000489562 WASHC3Q9Y3C0 194 aa11.19□□□□□ -0.62
C9orf3-221ENST00000489562 MTORP42345 2549 aa11.18□□□□□ -0.62
C9orf3-221ENST00000489562 TEX13DA0A0J9YY54 714 aaPredicted RBP11.18□□□□□ -0.62
C9orf3-221ENST00000489562 CRYM-AS1A6NIL9 109 aa11.18□□□□□ -0.62
C9orf3-221ENST00000489562 LINC00473A8K010 186 aa11.18□□□□□ -0.62
C9orf3-221ENST00000489562 H0Y980 276 aa11.18□□□□□ -0.62
C9orf3-221ENST00000489562 H0YJW9 148 aa11.18□□□□□ -0.62
C9orf3-221ENST00000489562 RBFOX2O43251 390 aaKnown RBP eCLIP11.18□□□□□ -0.62
C9orf3-221ENST00000489562 H2AFB2P0C5Z0 115 aa11.18□□□□□ -0.62
C9orf3-221ENST00000489562 RBMS3Q6XE24 437 aaKnown RBP11.18□□□□□ -0.62
C9orf3-221ENST00000489562 SLC25A42Q86VD7 318 aa11.18□□□□□ -0.62
C9orf3-221ENST00000489562 THNSL2Q86YJ6 484 aa11.18□□□□□ -0.62
C9orf3-221ENST00000489562 MINDY2Q8NBR6 621 aa11.18□□□□□ -0.62
C9orf3-221ENST00000489562 OR4S2Q8NH73 311 aa11.18□□□□□ -0.62
C9orf3-221ENST00000489562 OR5R1Q8NH85 324 aa11.18□□□□□ -0.62
C9orf3-221ENST00000489562 C22orf15Q8WYQ4 148 aa11.18□□□□□ -0.62
C9orf3-221ENST00000489562 NAA60Q9H7X0 242 aa11.18□□□□□ -0.62
C9orf3-221ENST00000489562 SLC35D1Q9NTN3 355 aa11.18□□□□□ -0.62
C9orf3-221ENST00000489562 KCNIP3Q9Y2W7 256 aa11.18□□□□□ -0.62
C9orf3-221ENST00000489562 C2CD3Q4AC94 2353 aa11.17□□□□□ -0.62
C9orf3-221ENST00000489562 TRAV6A0A075B6T7 132 aa11.17□□□□□ -0.62
C9orf3-221ENST00000489562 PIGBOS1A0A0B4J2F0 54 aa11.17□□□□□ -0.62
C9orf3-221ENST00000489562 C3orf85A0A1B0GTC6 90 aa11.17□□□□□ -0.62
C9orf3-221ENST00000489562 BTBD17A6NE02 478 aa11.17□□□□□ -0.62
C9orf3-221ENST00000489562 FAM90A9PA6NNJ1 464 aa11.17□□□□□ -0.62
C9orf3-221ENST00000489562 H7C2Y5 167 aa11.17□□□□□ -0.62
C9orf3-221ENST00000489562 PEX14O75381 377 aa11.17□□□□□ -0.62
C9orf3-221ENST00000489562 CRLF1O75462 422 aa11.17□□□□□ -0.62
C9orf3-221ENST00000489562 VENTXO95231 258 aa11.17□□□□□ -0.62
C9orf3-221ENST00000489562 FAM157CP0CG43 387 aa11.17□□□□□ -0.62
C9orf3-221ENST00000489562 FAM106CPP0CH98 169 aa11.17□□□□□ -0.62
C9orf3-221ENST00000489562 ANXA3P12429 323 aa11.17□□□□□ -0.62
C9orf3-221ENST00000489562 AKR1C4P17516 323 aa11.17□□□□□ -0.62
C9orf3-221ENST00000489562 MECP2P51608 486 aaKnown RBP11.17□□□□□ -0.62
C9orf3-221ENST00000489562 RPL30P62888 115 aaKnown RBP11.17□□□□□ -0.62
C9orf3-221ENST00000489562 DHODHQ02127 395 aa11.17□□□□□ -0.62
C9orf3-221ENST00000489562 Q6YL49 198 aa11.17□□□□□ -0.62
C9orf3-221ENST00000489562 GLDNQ6ZMI3 551 aaPredicted RBP11.17□□□□□ -0.62
C9orf3-221ENST00000489562 ADAD2Q8NCV1 583 aaKnown RBP11.17□□□□□ -0.62
C9orf3-221ENST00000489562 OR2T10Q8NGZ9 312 aa11.17□□□□□ -0.62
C9orf3-221ENST00000489562 SSMEM1Q8WWF3 244 aa11.17□□□□□ -0.62
C9orf3-221ENST00000489562 TMEM230Q96A57 120 aa11.17□□□□□ -0.62
C9orf3-221ENST00000489562 GALNT14Q96FL9 552 aa11.17□□□□□ -0.62
C9orf3-221ENST00000489562 SSX3Q99909 188 aa11.17□□□□□ -0.62
C9orf3-221ENST00000489562 RNF5Q99942 180 aa11.17□□□□□ -0.62
C9orf3-221ENST00000489562 MARVELD1Q9BSK0 173 aa11.17□□□□□ -0.62
C9orf3-221ENST00000489562 PITPNC1Q9UKF7 332 aa11.17□□□□□ -0.62
C9orf3-221ENST00000489562 FLVCR2Q9UPI3 526 aa11.17□□□□□ -0.62
C9orf3-221ENST00000489562 FCGR3BO75015 233 aa11.16□□□□□ -0.62
C9orf3-221ENST00000489562 MOSP00540 346 aa11.16□□□□□ -0.62
C9orf3-221ENST00000489562 RPA2P15927 270 aa11.16□□□□□ -0.62
C9orf3-221ENST00000489562 IER3P46695 156 aa11.16□□□□□ -0.62
C9orf3-221ENST00000489562 EBI3Q14213 229 aa11.16□□□□□ -0.62
C9orf3-221ENST00000489562 TRIM16LQ309B1 348 aa11.16□□□□□ -0.62
C9orf3-221ENST00000489562 CCBE1Q6UXH8 406 aaPredicted RBP11.16□□□□□ -0.62
C9orf3-221ENST00000489562 SPAG16Q8N0X2 631 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms