RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 ATP8B1O43520 1251 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 FN1P02751 2386 aaKnown RBP0.51□□□□□ -2.33
VPS50-216ENST00000484954 LINC00614P0C842 121 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 PSMB6P28072 239 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 LRPPRCP42704 1394 aaKnown RBP0.51□□□□□ -2.33
VPS50-216ENST00000484954 TAS2R45P59539 299 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 UBE2G2P60604 165 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 MGAT3Q09327 533 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 JOSD1Q15040 202 aaPredicted RBP0.51□□□□□ -2.33
VPS50-216ENST00000484954 DNM1P34Q6PK57 102 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 SCGB1D4Q6XE38 83 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 GPHB5Q86YW7 130 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 CRLF3Q8IUI8 442 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 CCDC112Q8NEF3 446 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 ATP6V1C2Q8NEY4 427 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 OR7G1Q8NGA0 311 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 OR2D3Q8NGH3 330 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 OR4X1Q8NH49 305 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 RPS4Y2Q8TD47 263 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 Q8WTZ3 238 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 RAD50Q92878 1312 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 FGF13Q92913 245 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 LRRC45Q96CN5 670 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 TLCD1Q96CP7 247 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 CPNE2Q96FN4 548 aaPredicted RBP0.51□□□□□ -2.33
VPS50-216ENST00000484954 SFRP2Q96HF1 295 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 ATP6V1G3Q96LB4 118 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 MND1Q9BWT6 205 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 BBS2Q9BXC9 721 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 SLC22A4Q9H015 551 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 NSRP1Q9H0G5 558 aaKnown RBP0.51□□□□□ -2.33
VPS50-216ENST00000484954 VCX3BQ9H321 246 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 PSMD13Q9UNM6 376 aa0.51□□□□□ -2.33
VPS50-216ENST00000484954 TRGV2A0A075B6R0 118 aa0.5□□□□□ -2.33
VPS50-216ENST00000484954 A0A087WUU8 490 aa0.5□□□□□ -2.33
VPS50-216ENST00000484954 TRAV8-1A0A0A6YYK1 113 aa0.5□□□□□ -2.33
VPS50-216ENST00000484954 DAPL1A0PJW8 107 aa0.5□□□□□ -2.33
VPS50-216ENST00000484954 OR6C6A6NF89 314 aa0.5□□□□□ -2.33
VPS50-216ENST00000484954 GOLGA6L10A6NI86 522 aa0.5□□□□□ -2.33
VPS50-216ENST00000484954 C9JCJ5 164 aa0.5□□□□□ -2.33
VPS50-216ENST00000484954 UBFD1O14562 309 aaKnown RBP0.5□□□□□ -2.33
VPS50-216ENST00000484954 CALUO43852 315 aaPredicted RBP0.5□□□□□ -2.33
VPS50-216ENST00000484954 NDUFB2O95178 105 aa0.5□□□□□ -2.33
VPS50-216ENST00000484954 C1QCP02747 245 aa0.5□□□□□ -2.33
VPS50-216ENST00000484954 ZNF705DP0CH99 300 aaPredicted RBP0.5□□□□□ -2.33
VPS50-216ENST00000484954 ZNF705BP0CI00 300 aaPredicted RBP0.5□□□□□ -2.33
VPS50-216ENST00000484954 F8A1P23610 371 aa0.5□□□□□ -2.33
VPS50-216ENST00000484954 ATP6V0CP27449 155 aa0.5□□□□□ -2.33
VPS50-216ENST00000484954 CD79BP40259 229 aa0.5□□□□□ -2.33
VPS50-216ENST00000484954 CRATP43155 626 aa0.5□□□□□ -2.33
VPS50-216ENST00000484954 IDH3GP51553 393 aaPredicted RBP0.5□□□□□ -2.33
VPS50-216ENST00000484954 TAS2R30P59541 319 aa0.5□□□□□ -2.33
VPS50-216ENST00000484954 RPS24P62847 133 aaKnown RBP0.5□□□□□ -2.33
VPS50-216ENST00000484954 FABP5Q01469 135 aa0.5□□□□□ -2.33
VPS50-216ENST00000484954 ZNF90Q03938 601 aa0.5□□□□□ -2.33
VPS50-216ENST00000484954 GNA13Q14344 377 aa0.5□□□□□ -2.33
VPS50-216ENST00000484954 ANGPT1Q15389 498 aa0.5□□□□□ -2.33
VPS50-216ENST00000484954 DNAL1Q4LDG9 190 aa0.5□□□□□ -2.33
VPS50-216ENST00000484954 TMEM31Q5JXX7 168 aa0.5□□□□□ -2.33
VPS50-216ENST00000484954 SDHAF4Q5VUM1 108 aa0.5□□□□□ -2.33
VPS50-216ENST00000484954 CD302Q8IX05 232 aa0.5□□□□□ -2.33
VPS50-216ENST00000484954 LRRC34Q8IZ02 419 aa0.5□□□□□ -2.33
VPS50-216ENST00000484954 SLC37A2Q8TED4 501 aa0.5□□□□□ -2.33
VPS50-216ENST00000484954 PACRGQ96M98 296 aaPredicted RBP0.5□□□□□ -2.33
VPS50-216ENST00000484954 NAA38Q9BRA0 125 aaKnown RBP0.5□□□□□ -2.33
VPS50-216ENST00000484954 EIF5A2Q9GZV4 153 aaKnown RBP0.5□□□□□ -2.33
VPS50-216ENST00000484954 METTL9Q9H1A3 318 aa0.5□□□□□ -2.33
VPS50-216ENST00000484954 IMP3Q9NV31 184 aaKnown RBP0.5□□□□□ -2.33
VPS50-216ENST00000484954 HDGFL3Q9Y3E1 203 aa0.5□□□□□ -2.33
VPS50-216ENST00000484954 RBM7Q9Y580 266 aaKnown RBP0.5□□□□□ -2.33
VPS50-216ENST00000484954 KIAA2026Q5HYC2 2103 aa0.5□□□□□ -2.33
VPS50-216ENST00000484954 AHNAKQ09666 5890 aaKnown RBP0.5□□□□□ -2.33
VPS50-216ENST00000484954 MUC5BQ9HC84 5762 aaPredicted RBP0.49□□□□□ -2.33
VPS50-216ENST00000484954 DNMT1P26358 1616 aaKnown RBP0.49□□□□□ -2.33
VPS50-216ENST00000484954 ABCC12Q96J65 1359 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 DSCAMO60469 2012 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 ZNF532Q9HCE3 1301 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 ZNF469Q96JG9 3925 aaPredicted RBP0.49□□□□□ -2.33
VPS50-216ENST00000484954 TRGV5A0A0B4J1U4 118 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 TRAV41A0A0B4J266 112 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 TEX50A0A1B0GTY4 177 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 LINC00854A0A1B0GVQ3 168 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 J3QQQ9 107 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 COPEO14579 308 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 COCHO43405 550 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 GSTZ1O43708 216 aaPredicted RBP0.49□□□□□ -2.33
VPS50-216ENST00000484954 ZNF737O75373 536 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 PSMG1O95456 288 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 ATP6V1G2O95670 118 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 MT-CO2P00403 227 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 HLA-DRAP01903 254 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 CCL5P13501 91 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 HIST1H1CP16403 213 aaKnown RBP0.49□□□□□ -2.33
VPS50-216ENST00000484954 CFL1P23528 166 aaKnown RBP0.49□□□□□ -2.33
VPS50-216ENST00000484954 CCR2P41597 374 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 CTBP2P56545 445 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 TMEM33P57088 247 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 RPL26P61254 145 aaKnown RBP0.49□□□□□ -2.33
VPS50-216ENST00000484954 TMED1Q13445 227 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 SAPCD1Q5SSQ6 148 aa0.49□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms