RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 PRDX1Q06830 199 aaKnown RBP4.08□□□□□ -1.76
USP40-213ENST00000483216 ZP4Q12836 540 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 PPP1R1AQ13522 171 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 ATXN7L3Q14CW9 347 aaPredicted RBP4.08□□□□□ -1.76
USP40-213ENST00000483216 MPV17LQ2QL34 196 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 TCEAL5Q5H9L2 206 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 C1orf100Q5SVJ3 147 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 NCMAPQ5T1S8 102 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 FAM162BQ5T6X4 162 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 TMEM220Q6QAJ8 160 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 LANCL3Q6ZV70 420 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 RABEPKQ7Z6M1 372 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 TRAPPC6BQ86SZ2 158 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 ZNF429Q86V71 674 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 H1FOOQ8IZA3 346 aaPredicted RBP4.08□□□□□ -1.76
USP40-213ENST00000483216 COX18Q8N8Q8 333 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 BBS1Q8NFJ9 593 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 OR10AD1Q8NGE0 317 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 OR4D9Q8NGE8 314 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 OR51D1Q8NGF3 324 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 OR56B2PQ8NGI1 322 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 OR5K2Q8NHB8 316 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 CASTOR1Q8WTX7 329 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 ORAOV1Q8WV07 137 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 AQP3Q92482 292 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 TSLPQ969D9 159 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 RASD2Q96D21 266 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 MUCL1Q96DR8 90 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 SMIM12Q96EX1 92 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 SEC22AQ96IW7 307 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 BMFQ96LC9 184 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 PDCD1LG2Q9BQ51 273 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 CHST6Q9GZX3 395 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 GPR84Q9NQS5 396 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 CYTL1Q9NRR1 136 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 PISDQ9UG56 409 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 TBX21Q9UL17 535 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 HDGFL3Q9Y3E1 203 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 PUS1Q9Y606 427 aaKnown RBP eCLIP4.08□□□□□ -1.76
USP40-213ENST00000483216 PLXNA4Q9HCM2 1894 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 BPTFQ12830 3046 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 TRAV39A0A0B4J263 110 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 A0A0B4J2E0 115 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 A0A1B0GX12 115 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 MAP1LC3B2A6NCE7 125 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 TMEM235A6NFC5 223 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 ZNF705GA8MUZ8 300 aaPredicted RBP4.07□□□□□ -1.76
USP40-213ENST00000483216 H3BQ15 152 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 HIST1H2BKO60814 126 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 MTX2O75431 263 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 YIF1AO95070 293 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 IFNA5P01569 189 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 HIST1H2BJP06899 126 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 MMP7P09237 267 aaPredicted RBP4.07□□□□□ -1.76
USP40-213ENST00000483216 HNF1AP20823 631 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 HIST1H2BOP23527 126 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 GDI1P31150 447 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 HIST1H2BBP33778 126 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 LPAR6P43657 344 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 CDKN1BP46527 198 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 POLR2HP52434 150 aaKnown RBP4.07□□□□□ -1.76
USP40-213ENST00000483216 CCL23P55773 120 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 CLDN6P56747 220 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 TMEM33P57088 247 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 HIST1H2BDP58876 126 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 TPPP2P59282 170 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 TAS2R30P59541 319 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 S100A10P60903 97 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 UBE2NP61088 152 aaKnown RBP4.07□□□□□ -1.76
USP40-213ENST00000483216 RPS23P62266 143 aaKnown RBP4.07□□□□□ -1.76
USP40-213ENST00000483216 RAB11AP62491 216 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 LCN6P62502 163 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 HIST1H2BCP62807 126 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 SERF2P84101 59 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 PAX5Q02548 391 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 ENDOGQ14249 297 aaKnown RBP4.07□□□□□ -1.76
USP40-213ENST00000483216 GAMTQ14353 236 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 INSL4Q14641 139 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 ELOBQ15370 118 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 HIST2H2BEQ16778 126 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 ATP6V1FQ16864 119 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 IAH1Q2TAA2 248 aaPredicted RBP4.07□□□□□ -1.76
USP40-213ENST00000483216 ABCA11PQ4W5N1 156 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 TMEM41BQ5BJD5 291 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.07□□□□□ -1.76
USP40-213ENST00000483216 ZNF684Q5T5D7 378 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 FAM27D1Q5T7N8 215 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 TMEM225Q6GV28 225 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 UFSP1Q6NVU6 142 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 C22orf39Q6P5X5 142 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 DEFB128Q7Z7B8 93 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 ZNF101Q8IZC7 436 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 GCNT2Q8N0V5 402 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 LGI3Q8N145 548 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 RNF175Q8N4F7 328 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 JAGN1Q8N5M9 183 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 C14orf178Q8N769 122 aaPredicted RBP4.07□□□□□ -1.76
USP40-213ENST00000483216 TCTEX1D1Q8N7M0 179 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 CHST4Q8NCG5 386 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 OR2L3Q8NG85 312 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms