RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 PCGF1Q9BSM1 259 aa6.68□□□□□ -1.34
USP4-210ENST00000483212 MRPL20Q9BYC9 149 aaKnown RBP6.68□□□□□ -1.34
USP4-210ENST00000483212 TMEM222Q9H0R3 208 aa6.68□□□□□ -1.34
USP4-210ENST00000483212 HEXA-AS1Q9H8Q6 139 aa6.68□□□□□ -1.34
USP4-210ENST00000483212 FAM212BQ9NTI7 297 aaPredicted RBP6.68□□□□□ -1.34
USP4-210ENST00000483212 HIF1ANQ9NWT6 349 aa6.68□□□□□ -1.34
USP4-210ENST00000483212 TMEM56-RWDD3S4R434 201 aa6.68□□□□□ -1.34
USP4-210ENST00000483212 CCDC168Q8NDH2 2452 aa6.68□□□□□ -1.34
USP4-210ENST00000483212 ZANQ9Y493 2812 aa6.67□□□□□ -1.34
USP4-210ENST00000483212 CENPVL3A0A0U1RRI6 287 aa6.67□□□□□ -1.34
USP4-210ENST00000483212 A0A1W2PPI3 338 aa6.67□□□□□ -1.34
USP4-210ENST00000483212 RNF212BA8MTL3 300 aa6.67□□□□□ -1.34
USP4-210ENST00000483212 A8MV72 311 aaPredicted RBP6.67□□□□□ -1.34
USP4-210ENST00000483212 TOR1AO14656 332 aa6.67□□□□□ -1.34
USP4-210ENST00000483212 RAMP3O60896 148 aa6.67□□□□□ -1.34
USP4-210ENST00000483212 S100GP29377 79 aa6.67□□□□□ -1.34
USP4-210ENST00000483212 THBS3P49746 956 aa6.67□□□□□ -1.34
USP4-210ENST00000483212 GZMKP49863 264 aa6.67□□□□□ -1.34
USP4-210ENST00000483212 UBE2E1P51965 193 aa6.67□□□□□ -1.34
USP4-210ENST00000483212 KRTAP1-1Q07627 177 aa6.67□□□□□ -1.34
USP4-210ENST00000483212 ZNF816Q0VGE8 651 aaPredicted RBP6.67□□□□□ -1.34
USP4-210ENST00000483212 CATR1Q13166 79 aa6.67□□□□□ -1.34
USP4-210ENST00000483212 KLF17Q5JT82 389 aaPredicted RBP6.67□□□□□ -1.34
USP4-210ENST00000483212 TPTE2P1Q5T6R2 138 aa6.67□□□□□ -1.34
USP4-210ENST00000483212 DCAF12L2Q5VW00 463 aa6.67□□□□□ -1.34
USP4-210ENST00000483212 LHFPL4Q7Z7J7 247 aa6.67□□□□□ -1.34
USP4-210ENST00000483212 SELENOHQ8IZQ5 122 aaKnown RBP6.67□□□□□ -1.34
USP4-210ENST00000483212 TCTEX1D1Q8N7M0 179 aa6.67□□□□□ -1.34
USP4-210ENST00000483212 DRAXINQ8NBI3 349 aaPredicted RBP6.67□□□□□ -1.34
USP4-210ENST00000483212 OR5AN1Q8NGI8 311 aa6.67□□□□□ -1.34
USP4-210ENST00000483212 OR10X1Q8NGY0 326 aa6.67□□□□□ -1.34
USP4-210ENST00000483212 LHX4Q969G2 390 aa6.67□□□□□ -1.34
USP4-210ENST00000483212 IL22RA2Q969J5 263 aa6.67□□□□□ -1.34
USP4-210ENST00000483212 PHB2Q99623 299 aa6.67□□□□□ -1.34
USP4-210ENST00000483212 NEURL2Q9BR09 285 aa6.67□□□□□ -1.34
USP4-210ENST00000483212 LIN7CQ9NUP9 197 aaKnown RBP6.67□□□□□ -1.34
USP4-210ENST00000483212 KCNIP3Q9Y2W7 256 aa6.67□□□□□ -1.34
USP4-210ENST00000483212 OTOGQ6ZRI0 2925 aa6.67□□□□□ -1.34
USP4-210ENST00000483212 YLPM1P49750 1951 aaKnown RBP6.67□□□□□ -1.34
USP4-210ENST00000483212 CREBBPQ92793 2442 aa6.67□□□□□ -1.34
USP4-210ENST00000483212 ANK3Q12955 4377 aaKnown RBP6.66□□□□□ -1.34
USP4-210ENST00000483212 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.66□□□□□ -1.34
USP4-210ENST00000483212 SVEP1Q4LDE5 3571 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 A0A0G2JRQ6 117 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 H0YJW9 148 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 J3QLI3 93 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 RBFOX2O43251 390 aaKnown RBP eCLIP6.66□□□□□ -1.34
USP4-210ENST00000483212 SSNA1O43805 119 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 ADAP1O75689 374 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 FSHBP01225 129 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 ARG1P05089 322 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 P0C879 139 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 ANXA3P12429 323 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 ZNF16P17020 682 aaPredicted RBP6.66□□□□□ -1.34
USP4-210ENST00000483212 IL3RAP26951 378 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 HTR1DP28221 377 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 REG1BP48304 166 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 H2BFSP57053 126 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 SRPXP78539 464 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 SRSF4Q08170 494 aaKnown RBP6.66□□□□□ -1.34
USP4-210ENST00000483212 CD300CQ08708 224 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 HABP2Q14520 560 aaPredicted RBP6.66□□□□□ -1.34
USP4-210ENST00000483212 OR2B11Q5JQS5 317 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 MINOS1Q5TGZ0 78 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 C11orf88Q6PI97 169 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 PDZD9Q8IXQ8 264 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 SPAG16Q8N0X2 631 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 LGI3Q8N145 548 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 DYNAPQ8N1N2 210 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 SLC35G3Q8N808 338 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 OR5M8Q8NGP6 311 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 COQ8AQ8NI60 647 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 C17orf50Q8WW18 174 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 TCTEX1D2Q8WW35 142 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 CFHR4Q92496 578 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 RBMXL1Q96E39 390 aaKnown RBP6.66□□□□□ -1.34
USP4-210ENST00000483212 WDR89Q96FK6 387 aaPredicted RBP6.66□□□□□ -1.34
USP4-210ENST00000483212 ADTRPQ96IZ2 230 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 ST6GAL2Q96JF0 529 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 S1PR3Q99500 378 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 MED28Q9H204 178 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 C7orf69Q9H7B7 122 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 RAB18Q9NP72 206 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 DPM3Q9P2X0 92 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 MGAT4CQ9UBM8 478 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 TBL2Q9Y4P3 447 aaKnown RBP6.66□□□□□ -1.34
USP4-210ENST00000483212 AMMECR1Q9Y4X0 333 aaPredicted RBP6.66□□□□□ -1.34
USP4-210ENST00000483212 AUP1Q9Y679 476 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 MINOS1-NBL1R4GNA1 71 aa6.66□□□□□ -1.34
USP4-210ENST00000483212 TRAV40A0A0B4J280 105 aa6.65□□□□□ -1.34
USP4-210ENST00000483212 IGHV1-69DA0A0B4J2H0 117 aa6.65□□□□□ -1.34
USP4-210ENST00000483212 IGHV1-3A0A0C4DH29 117 aa6.65□□□□□ -1.34
USP4-210ENST00000483212 DUXBA0A1W2PPF3 345 aa6.65□□□□□ -1.34
USP4-210ENST00000483212 A0A1W2PRD5 423 aa6.65□□□□□ -1.34
USP4-210ENST00000483212 A0A1W2PRF3 423 aa6.65□□□□□ -1.34
USP4-210ENST00000483212 A0A1W2PRM7 423 aa6.65□□□□□ -1.34
USP4-210ENST00000483212 MPTX1A8MV57 137 aa6.65□□□□□ -1.34
USP4-210ENST00000483212 LEUTXA8MZ59 168 aa6.65□□□□□ -1.34
USP4-210ENST00000483212 CCSO14618 274 aa6.65□□□□□ -1.34
USP4-210ENST00000483212 GOSR2O14653 212 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms