RNA–Protein interactions for RNA: ENST00000481800.1

COL9A3-212, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-212ENST00000481800 LINC00205P59089 165 aa13.76□□□□□ -0.21
COL9A3-212ENST00000481800 EGFEM1PQ0D2K5 195 aa13.76□□□□□ -0.21
COL9A3-212ENST00000481800 CBX3Q13185 183 aa13.76□□□□□ -0.21
COL9A3-212ENST00000481800 NEDD8Q15843 81 aa13.76□□□□□ -0.21
COL9A3-212ENST00000481800 DEFB121Q5J5C9 76 aa13.76□□□□□ -0.21
COL9A3-212ENST00000481800 SFXN4Q6P4A7 337 aa13.76□□□□□ -0.21
COL9A3-212ENST00000481800 TCTEX1D1Q8N7M0 179 aa13.76□□□□□ -0.21
COL9A3-212ENST00000481800 MINDY2Q8NBR6 621 aa13.76□□□□□ -0.21
COL9A3-212ENST00000481800 OR11H1Q8NG94 326 aa13.76□□□□□ -0.21
COL9A3-212ENST00000481800 GAB2Q9UQC2 676 aa13.76□□□□□ -0.21
COL9A3-212ENST00000481800 FOXA2Q9Y261 457 aaPredicted RBP13.76□□□□□ -0.21
COL9A3-212ENST00000481800 TGP01266 2768 aa13.75□□□□□ -0.21
COL9A3-212ENST00000481800 SNRPBP14678 240 aaKnown RBP13.75□□□□□ -0.21
COL9A3-212ENST00000481800 CD36P16671 472 aa13.75□□□□□ -0.21
COL9A3-212ENST00000481800 NDPQ00604 133 aa13.75□□□□□ -0.21
COL9A3-212ENST00000481800 MXD1Q05195 221 aa13.75□□□□□ -0.21
COL9A3-212ENST00000481800 KCTD21Q4G0X4 260 aa13.75□□□□□ -0.21
COL9A3-212ENST00000481800 ZNF562Q6V9R5 426 aa13.75□□□□□ -0.21
COL9A3-212ENST00000481800 Q6ZS49 121 aa13.75□□□□□ -0.21
COL9A3-212ENST00000481800 PPP1R27Q86WC6 154 aa13.75□□□□□ -0.21
COL9A3-212ENST00000481800 ZNF491Q8N8L2 437 aa13.75□□□□□ -0.21
COL9A3-212ENST00000481800 MYOZ3Q8TDC0 251 aa13.75□□□□□ -0.21
COL9A3-212ENST00000481800 OR5B12Q96R08 314 aa13.75□□□□□ -0.21
COL9A3-212ENST00000481800 ST6GALNAC5Q9BVH7 336 aa13.75□□□□□ -0.21
COL9A3-212ENST00000481800 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.75□□□□□ -0.21
COL9A3-212ENST00000481800 SDHAF2Q9NX18 166 aa13.75□□□□□ -0.21
COL9A3-212ENST00000481800 ELF5Q9UKW6 265 aaPredicted RBP13.75□□□□□ -0.21
COL9A3-212ENST00000481800 FBXO7Q9Y3I1 522 aa13.75□□□□□ -0.21
COL9A3-212ENST00000481800 K7EIL1 84 aa13.74□□□□□ -0.21
COL9A3-212ENST00000481800 SLC25A17O43808 307 aa13.74□□□□□ -0.21
COL9A3-212ENST00000481800 CD40LGP29965 261 aa13.74□□□□□ -0.21
COL9A3-212ENST00000481800 CRIP2P52943 208 aaPredicted RBP13.74□□□□□ -0.21
COL9A3-212ENST00000481800 GNG2P59768 71 aa13.74□□□□□ -0.21
COL9A3-212ENST00000481800 PITPNAQ00169 270 aa13.74□□□□□ -0.21
COL9A3-212ENST00000481800 TAGLNQ01995 201 aaKnown RBP13.74□□□□□ -0.21
COL9A3-212ENST00000481800 HACD4Q5VWC8 232 aa13.74□□□□□ -0.21
COL9A3-212ENST00000481800 UNQ5815/PRO19632Q6UWF5 114 aa13.74□□□□□ -0.21
COL9A3-212ENST00000481800 OR1N2Q8NGR9 330 aa13.74□□□□□ -0.21
COL9A3-212ENST00000481800 LGALS14Q8TCE9 139 aa13.74□□□□□ -0.21
COL9A3-212ENST00000481800 GNB4Q9HAV0 340 aa13.74□□□□□ -0.21
COL9A3-212ENST00000481800 NUBP2Q9Y5Y2 271 aa13.74□□□□□ -0.21
COL9A3-212ENST00000481800 PRKDCP78527 4128 aaKnown RBP13.73□□□□□ -0.21
COL9A3-212ENST00000481800 WI2-2373I1.2A0A1W2PRP0 233 aa13.73□□□□□ -0.21
COL9A3-212ENST00000481800 CA2P00918 260 aa13.73□□□□□ -0.21
COL9A3-212ENST00000481800 CTXN2P0C2S0 81 aa13.73□□□□□ -0.21
COL9A3-212ENST00000481800 OR8U8P0C7N1 319 aa13.73□□□□□ -0.21
COL9A3-212ENST00000481800 LGALS7P47929 136 aa13.73□□□□□ -0.21
COL9A3-212ENST00000481800 KIAA0141Q14154 515 aaPredicted RBP13.73□□□□□ -0.21
COL9A3-212ENST00000481800 RTL8BQ17RB0 113 aa13.73□□□□□ -0.21
COL9A3-212ENST00000481800 ACTBL2Q562R1 376 aa13.73□□□□□ -0.21
COL9A3-212ENST00000481800 C9orf66Q5T8R8 295 aa13.73□□□□□ -0.21
COL9A3-212ENST00000481800 PYHIN1Q6K0P9 492 aa13.73□□□□□ -0.21
COL9A3-212ENST00000481800 H1FOOQ8IZA3 346 aaPredicted RBP13.73□□□□□ -0.21
COL9A3-212ENST00000481800 FAM103A1Q9BTL3 118 aaKnown RBP13.73□□□□□ -0.21
COL9A3-212ENST00000481800 DCSTAMPQ9H295 470 aa13.73□□□□□ -0.21
COL9A3-212ENST00000481800 RNF167Q9H6Y7 350 aa13.73□□□□□ -0.21
COL9A3-212ENST00000481800 IGKV1D-8A0A087WSZ0 117 aa13.72□□□□□ -0.21
COL9A3-212ENST00000481800 TMEM235A6NFC5 223 aa13.72□□□□□ -0.21
COL9A3-212ENST00000481800 SEC14L6B5MCN3 397 aa13.72□□□□□ -0.21
COL9A3-212ENST00000481800 I3L521 148 aa13.72□□□□□ -0.21
COL9A3-212ENST00000481800 CNIH1O95406 144 aa13.72□□□□□ -0.21
COL9A3-212ENST00000481800 CLEC2LP0C7M8 214 aa13.72□□□□□ -0.21
COL9A3-212ENST00000481800 RRASP10301 218 aa13.72□□□□□ -0.21
COL9A3-212ENST00000481800 EGR2P11161 476 aaPredicted RBP13.72□□□□□ -0.21
COL9A3-212ENST00000481800 DGCR2P98153 550 aa13.72□□□□□ -0.21
COL9A3-212ENST00000481800 RUNX1Q01196 453 aa13.72□□□□□ -0.21
COL9A3-212ENST00000481800 ZNF616Q08AN1 781 aa13.72□□□□□ -0.21
COL9A3-212ENST00000481800 FHL3Q13643 280 aa13.72□□□□□ -0.21
COL9A3-212ENST00000481800 AKIRIN2Q53H80 203 aa13.72□□□□□ -0.21
COL9A3-212ENST00000481800 C19orf54Q5BKX5 351 aa13.72□□□□□ -0.21
COL9A3-212ENST00000481800 IDNKQ5T6J7 187 aa13.72□□□□□ -0.21
COL9A3-212ENST00000481800 BVESQ8NE79 360 aa13.72□□□□□ -0.21
COL9A3-212ENST00000481800 LFNGQ8NES3 379 aa13.72□□□□□ -0.21
COL9A3-212ENST00000481800 GRPEL2Q8TAA5 225 aa13.72□□□□□ -0.21
COL9A3-212ENST00000481800 NUDCD2Q8WVJ2 157 aa13.72□□□□□ -0.21
COL9A3-212ENST00000481800 ARPC1AQ92747 370 aa13.72□□□□□ -0.21
COL9A3-212ENST00000481800 ADTRPQ96IZ2 230 aa13.72□□□□□ -0.21
COL9A3-212ENST00000481800 HARBI1Q96MB7 349 aa13.72□□□□□ -0.21
COL9A3-212ENST00000481800 RHBDL2Q9NX52 303 aa13.72□□□□□ -0.21
COL9A3-212ENST00000481800 J3QRK9 145 aa13.71□□□□□ -0.21
COL9A3-212ENST00000481800 SHOXO15266 292 aa13.71□□□□□ -0.21
COL9A3-212ENST00000481800 SOX15O60248 233 aa13.71□□□□□ -0.21
COL9A3-212ENST00000481800 RAMP3O60896 148 aa13.71□□□□□ -0.21
COL9A3-212ENST00000481800 LUMP51884 338 aaPredicted RBP13.71□□□□□ -0.21
COL9A3-212ENST00000481800 SCAND1P57086 179 aa13.71□□□□□ -0.21
COL9A3-212ENST00000481800 GNB1P62873 340 aa13.71□□□□□ -0.21
COL9A3-212ENST00000481800 FXYD3Q14802 87 aa13.71□□□□□ -0.21
COL9A3-212ENST00000481800 TIMM50Q3ZCQ8 353 aa13.71□□□□□ -0.21
COL9A3-212ENST00000481800 ZNF260Q3ZCT1 412 aa13.71□□□□□ -0.21
COL9A3-212ENST00000481800 CASTOR1Q8WTX7 329 aa13.71□□□□□ -0.21
COL9A3-212ENST00000481800 VCX3AQ9NNX9 186 aa13.71□□□□□ -0.21
COL9A3-212ENST00000481800 TPSG1Q9NRR2 321 aa13.71□□□□□ -0.21
COL9A3-212ENST00000481800 ETV7Q9Y603 341 aa13.71□□□□□ -0.21
COL9A3-212ENST00000481800 CNIH2Q6PI25 160 aa13.7□□□□□ -0.22
COL9A3-212ENST00000481800 MS4A10Q96PG2 267 aa13.7□□□□□ -0.22
COL9A3-212ENST00000481800 TRAV18A0A075B6X5 111 aa13.69□□□□□ -0.22
COL9A3-212ENST00000481800 IGLV2-23P01705 113 aa13.69□□□□□ -0.22
COL9A3-212ENST00000481800 NFYAP23511 347 aaPredicted RBP13.69□□□□□ -0.22
COL9A3-212ENST00000481800 DUTP33316 252 aaKnown RBP13.69□□□□□ -0.22
COL9A3-212ENST00000481800 TPPP2P59282 170 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms