RNA–Protein interactions for RNA: ENST00000479161.5

C9orf3-217, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 942 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-217ENST00000479161 H3BMQ9 156 aa12.22□□□□□ -0.45
C9orf3-217ENST00000479161 RRHO14718 337 aa12.22□□□□□ -0.45
C9orf3-217ENST00000479161 OPN1MWP04001 364 aa12.22□□□□□ -0.45
C9orf3-217ENST00000479161 OPN1MW2P0DN77 364 aa12.22□□□□□ -0.45
C9orf3-217ENST00000479161 OPN1MW3P0DN78 364 aa12.22□□□□□ -0.45
C9orf3-217ENST00000479161 OR5H8P0DN80 308 aa12.22□□□□□ -0.45
C9orf3-217ENST00000479161 NFYAP23511 347 aaPredicted RBP12.22□□□□□ -0.45
C9orf3-217ENST00000479161 DUTP33316 252 aaKnown RBP12.22□□□□□ -0.45
C9orf3-217ENST00000479161 CDK10Q15131 360 aa12.22□□□□□ -0.45
C9orf3-217ENST00000479161 CNPY1Q3B7I2 92 aa12.22□□□□□ -0.45
C9orf3-217ENST00000479161 DDB2Q92466 427 aa12.22□□□□□ -0.45
C9orf3-217ENST00000479161 FLYWCH2Q96CP2 140 aaKnown RBP12.22□□□□□ -0.45
C9orf3-217ENST00000479161 RITA1Q96K30 269 aa12.22□□□□□ -0.45
C9orf3-217ENST00000479161 CEPT1Q9Y6K0 416 aa12.22□□□□□ -0.45
C9orf3-217ENST00000479161 TNCP24821 2201 aa12.22□□□□□ -0.45
C9orf3-217ENST00000479161 H7C2Y5 167 aa12.21□□□□□ -0.45
C9orf3-217ENST00000479161 IGLV2-14P01704 120 aa12.21□□□□□ -0.45
C9orf3-217ENST00000479161 PTHLHP12272 177 aa12.21□□□□□ -0.45
C9orf3-217ENST00000479161 SLC6A1P30531 599 aa12.21□□□□□ -0.45
C9orf3-217ENST00000479161 CRIP2P52943 208 aaPredicted RBP12.21□□□□□ -0.45
C9orf3-217ENST00000479161 SLC35B1P78383 322 aa12.21□□□□□ -0.45
C9orf3-217ENST00000479161 MRPS10P82664 201 aaKnown RBP12.21□□□□□ -0.45
C9orf3-217ENST00000479161 DYRK1AQ13627 763 aa12.21□□□□□ -0.45
C9orf3-217ENST00000479161 RTL8BQ17RB0 113 aa12.21□□□□□ -0.45
C9orf3-217ENST00000479161 TMEM95Q3KNT9 176 aa12.21□□□□□ -0.45
C9orf3-217ENST00000479161 TMEM177Q53S58 311 aa12.21□□□□□ -0.45
C9orf3-217ENST00000479161 C9orf152Q5JTZ5 239 aa12.21□□□□□ -0.45
C9orf3-217ENST00000479161 ZNF660Q6AZW8 331 aaPredicted RBP12.21□□□□□ -0.45
C9orf3-217ENST00000479161 LIN54Q6MZP7 749 aa12.21□□□□□ -0.45
C9orf3-217ENST00000479161 STPG2Q8N412 459 aa12.21□□□□□ -0.45
C9orf3-217ENST00000479161 RNF152Q8N8N0 203 aa12.21□□□□□ -0.45
C9orf3-217ENST00000479161 DRAXINQ8NBI3 349 aaPredicted RBP12.21□□□□□ -0.45
C9orf3-217ENST00000479161 OR4X2Q8NGF9 303 aa12.21□□□□□ -0.45
C9orf3-217ENST00000479161 DGCR14Q96DF8 476 aaKnown RBP12.21□□□□□ -0.45
C9orf3-217ENST00000479161 HSD17B10Q99714 261 aaKnown RBP12.21□□□□□ -0.45
C9orf3-217ENST00000479161 MMP27Q9H306 513 aa12.21□□□□□ -0.45
C9orf3-217ENST00000479161 SLC35D1Q9NTN3 355 aa12.21□□□□□ -0.45
C9orf3-217ENST00000479161 PTTG2Q9NZH5 202 aa12.21□□□□□ -0.45
C9orf3-217ENST00000479161 RBMX2Q9Y388 322 aaKnown RBP12.21□□□□□ -0.45
C9orf3-217ENST00000479161 PSMB11A5LHX3 300 aa12.2□□□□□ -0.46
C9orf3-217ENST00000479161 PPYP01298 95 aa12.2□□□□□ -0.46
C9orf3-217ENST00000479161 IGKV1-16P04430 117 aa12.2□□□□□ -0.46
C9orf3-217ENST00000479161 FCGR2CP31995 323 aa12.2□□□□□ -0.46
C9orf3-217ENST00000479161 SSBP1Q04837 148 aaKnown RBP12.2□□□□□ -0.46
C9orf3-217ENST00000479161 CBX3Q13185 183 aa12.2□□□□□ -0.46
C9orf3-217ENST00000479161 EIF4EBP1Q13541 118 aaPredicted RBP12.2□□□□□ -0.46
C9orf3-217ENST00000479161 TREML4Q6UXN2 200 aa12.2□□□□□ -0.46
C9orf3-217ENST00000479161 GLDNQ6ZMI3 551 aaPredicted RBP12.2□□□□□ -0.46
C9orf3-217ENST00000479161 ZNF66Q6ZN08 573 aa12.2□□□□□ -0.46
C9orf3-217ENST00000479161 LYSMD2Q8IV50 215 aa12.2□□□□□ -0.46
C9orf3-217ENST00000479161 OSR1Q8TAX0 266 aaPredicted RBP12.2□□□□□ -0.46
C9orf3-217ENST00000479161 C5orf30Q96GV9 206 aa12.2□□□□□ -0.46
C9orf3-217ENST00000479161 SLIRPQ9GZT3 109 aaKnown RBP12.2□□□□□ -0.46
C9orf3-217ENST00000479161 NXF2Q9GZY0 626 aaKnown RBP12.2□□□□□ -0.46
C9orf3-217ENST00000479161 RBM38Q9H0Z9 239 aaKnown RBP12.2□□□□□ -0.46
C9orf3-217ENST00000479161 ZFP57Q9NU63 452 aa12.2□□□□□ -0.46
C9orf3-217ENST00000479161 ZNF107Q9UII5 783 aaPredicted RBP12.2□□□□□ -0.46
C9orf3-217ENST00000479161 MRPS7Q9Y2R9 242 aaKnown RBP12.2□□□□□ -0.46
C9orf3-217ENST00000479161 A3GALT2U3KPV4 340 aa12.2□□□□□ -0.46
C9orf3-217ENST00000479161 IGKV1D-13A0A0B4J2D9 117 aa12.19□□□□□ -0.46
C9orf3-217ENST00000479161 SH2D7A6NKC9 451 aaPredicted RBP12.19□□□□□ -0.46
C9orf3-217ENST00000479161 FAM25AB3EWG3 89 aa12.19□□□□□ -0.46
C9orf3-217ENST00000479161 FAM25CB3EWG5 89 aa12.19□□□□□ -0.46
C9orf3-217ENST00000479161 FAM25GB3EWG6 89 aa12.19□□□□□ -0.46
C9orf3-217ENST00000479161 IGKV1-13P0DP09 117 aa12.19□□□□□ -0.46
C9orf3-217ENST00000479161 CD28P10747 220 aa12.19□□□□□ -0.46
C9orf3-217ENST00000479161 TBPP20226 339 aa12.19□□□□□ -0.46
C9orf3-217ENST00000479161 RCVRNP35243 200 aa12.19□□□□□ -0.46
C9orf3-217ENST00000479161 ZNF562Q6V9R5 426 aa12.19□□□□□ -0.46
C9orf3-217ENST00000479161 MIXL1Q9H2W2 232 aa12.19□□□□□ -0.46
C9orf3-217ENST00000479161 OR51J1Q9H342 316 aa12.19□□□□□ -0.46
C9orf3-217ENST00000479161 EXTL2Q9UBQ6 330 aa12.19□□□□□ -0.46
C9orf3-217ENST00000479161 PRELID3BQ9Y3B1 194 aa12.19□□□□□ -0.46
C9orf3-217ENST00000479161 TSSC4Q9Y5U2 329 aaPredicted RBP12.19□□□□□ -0.46
C9orf3-217ENST00000479161 IGHV7-81A0A0B4J1V7 117 aa12.18□□□□□ -0.46
C9orf3-217ENST00000479161 ADARB2-AS1A8MUL3 147 aa12.18□□□□□ -0.46
C9orf3-217ENST00000479161 CTDSP2O14595 271 aa12.18□□□□□ -0.46
C9orf3-217ENST00000479161 CTDSPLO15194 276 aa12.18□□□□□ -0.46
C9orf3-217ENST00000479161 IGHG4P01861 327 aa12.18□□□□□ -0.46
C9orf3-217ENST00000479161 ELANEP08246 267 aa12.18□□□□□ -0.46
C9orf3-217ENST00000479161 CSF1P09603 554 aa12.18□□□□□ -0.46
C9orf3-217ENST00000479161 AADACP22760 399 aa12.18□□□□□ -0.46
C9orf3-217ENST00000479161 CNTFRP26992 372 aa12.18□□□□□ -0.46
C9orf3-217ENST00000479161 RPS16P62249 146 aaKnown RBP12.18□□□□□ -0.46
C9orf3-217ENST00000479161 CFHR3Q02985 330 aa12.18□□□□□ -0.46
C9orf3-217ENST00000479161 PSG5Q15238 335 aa12.18□□□□□ -0.46
C9orf3-217ENST00000479161 ACTBL2Q562R1 376 aa12.18□□□□□ -0.46
C9orf3-217ENST00000479161 TCTEX1D4Q5JR98 221 aa12.18□□□□□ -0.46
C9orf3-217ENST00000479161 TEX38Q6PEX7 206 aa12.18□□□□□ -0.46
C9orf3-217ENST00000479161 TCTEX1D1Q8N7M0 179 aa12.18□□□□□ -0.46
C9orf3-217ENST00000479161 OR5H2Q8NGV7 314 aa12.18□□□□□ -0.46
C9orf3-217ENST00000479161 CITED2Q99967 270 aaPredicted RBP12.18□□□□□ -0.46
C9orf3-217ENST00000479161 HSPB9Q9BQS6 159 aa12.18□□□□□ -0.46
C9orf3-217ENST00000479161 MTFP1Q9UDX5 166 aa12.18□□□□□ -0.46
C9orf3-217ENST00000479161 LINC01548A6NM66 108 aa12.17□□□□□ -0.46
C9orf3-217ENST00000479161 LINC00473A8K010 186 aa12.17□□□□□ -0.46
C9orf3-217ENST00000479161 RGS5O15539 181 aa12.17□□□□□ -0.46
C9orf3-217ENST00000479161 RBFOX2O43251 390 aaKnown RBP eCLIP12.17□□□□□ -0.462e-8■■■■□ 22.3
C9orf3-217ENST00000479161 IGLV2-23P01705 113 aa12.17□□□□□ -0.46
C9orf3-217ENST00000479161 CRYGBP07316 175 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms