RNA–Protein interactions for RNA: ENST00000475146.1

CPNE1-223, Transcript of copine 1, human

TSL 3

Gene CPNE1, Length 627 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-223	ENST00000475146	ZNF695	Q8IW36	515 aa		18.83	■□□□□ 0.6
CPNE1-223	ENST00000475146	ABHD5	Q8WTS1	349 aa		18.83	■□□□□ 0.6
CPNE1-223	ENST00000475146	FLYWCH2	Q96CP2	140 aa	Known RBP	18.83	■□□□□ 0.6
CPNE1-223	ENST00000475146	ANXA10	Q9UJ72	324 aa		18.83	■□□□□ 0.6
CPNE1-223	ENST00000475146	NOTCH1	P46531	2555 aa		18.83	■□□□□ 0.6
CPNE1-223	ENST00000475146	TRAV41	A0A0B4J266	112 aa		18.82	■□□□□ 0.6
CPNE1-223	ENST00000475146	SPDEF	O95238	335 aa		18.82	■□□□□ 0.6
CPNE1-223	ENST00000475146	SMIM18	P0DKX4	95 aa		18.82	■□□□□ 0.6
CPNE1-223	ENST00000475146	SLC6A1	P30531	599 aa		18.82	■□□□□ 0.6
CPNE1-223	ENST00000475146	THBS3	P49746	956 aa		18.82	■□□□□ 0.6
CPNE1-223	ENST00000475146	NDP	Q00604	133 aa		18.82	■□□□□ 0.6
CPNE1-223	ENST00000475146	CBX3	Q13185	183 aa		18.82	■□□□□ 0.6
CPNE1-223	ENST00000475146	WFDC9	Q8NEX5	89 aa		18.82	■□□□□ 0.6
CPNE1-223	ENST00000475146	OR13F1	Q8NGS4	319 aa		18.82	■□□□□ 0.6
CPNE1-223	ENST00000475146	CLCC1	Q96S66	551 aa		18.82	■□□□□ 0.6
CPNE1-223	ENST00000475146	AUNIP	Q9H7T9	357 aa		18.82	■□□□□ 0.6
CPNE1-223	ENST00000475146	IGLL1	P15814	213 aa		18.81	■□□□□ 0.6
CPNE1-223	ENST00000475146	LUM	P51884	338 aa	Predicted RBP	18.81	■□□□□ 0.6
CPNE1-223	ENST00000475146	ARPC4	P59998	168 aa		18.81	■□□□□ 0.6
CPNE1-223	ENST00000475146	VBP1	P61758	197 aa		18.81	■□□□□ 0.6
CPNE1-223	ENST00000475146	CX3CL1	P78423	397 aa		18.81	■□□□□ 0.6
CPNE1-223	ENST00000475146	ECSCR	Q19T08	205 aa		18.81	■□□□□ 0.6
CPNE1-223	ENST00000475146	UBE2NL	Q5JXB2	153 aa		18.81	■□□□□ 0.6
CPNE1-223	ENST00000475146	ZNF660	Q6AZW8	331 aa	Predicted RBP	18.81	■□□□□ 0.6
CPNE1-223	ENST00000475146	ETV3L	Q6ZN32	361 aa		18.81	■□□□□ 0.6
CPNE1-223	ENST00000475146	SAMD12	Q8N8I0	201 aa		18.81	■□□□□ 0.6
CPNE1-223	ENST00000475146	RNF152	Q8N8N0	203 aa		18.81	■□□□□ 0.6
CPNE1-223	ENST00000475146	BEST4	Q8NFU0	473 aa		18.81	■□□□□ 0.6
CPNE1-223	ENST00000475146	S100A16	Q96FQ6	103 aa	Known RBP	18.81	■□□□□ 0.6
CPNE1-223	ENST00000475146	OR2W1	Q9Y3N9	320 aa		18.81	■□□□□ 0.6
CPNE1-223	ENST00000475146	FCN1	O00602	326 aa		18.8	■□□□□ 0.6
CPNE1-223	ENST00000475146	SLC25A17	O43808	307 aa		18.8	■□□□□ 0.6
CPNE1-223	ENST00000475146	PTHLH	P12272	177 aa		18.8	■□□□□ 0.6
CPNE1-223	ENST00000475146	RTL8B	Q17RB0	113 aa		18.8	■□□□□ 0.6
CPNE1-223	ENST00000475146	GVQW1	Q8N7I0	195 aa		18.8	■□□□□ 0.6
CPNE1-223	ENST00000475146	LINC00482	Q8N8I6	264 aa		18.8	■□□□□ 0.6
CPNE1-223	ENST00000475146	BVES	Q8NE79	360 aa		18.8	■□□□□ 0.6
CPNE1-223	ENST00000475146	SLC25A46	Q96AG3	418 aa		18.8	■□□□□ 0.6
CPNE1-223	ENST00000475146	ADTRP	Q96IZ2	230 aa		18.8	■□□□□ 0.6
CPNE1-223	ENST00000475146	HARBI1	Q96MB7	349 aa		18.8	■□□□□ 0.6
CPNE1-223	ENST00000475146	A3GALT2	U3KPV4	340 aa		18.8	■□□□□ 0.6
CPNE1-223	ENST00000475146	NOTCH3	Q9UM47	2321 aa		18.8	■□□□□ 0.6
CPNE1-223	ENST00000475146	CA2	P00918	260 aa		18.79	■□□□□ 0.6
CPNE1-223	ENST00000475146	FCER2	P06734	321 aa		18.79	■□□□□ 0.6
CPNE1-223	ENST00000475146	PSMB8	P28062	276 aa		18.79	■□□□□ 0.6
CPNE1-223	ENST00000475146	MYCNOS	P40205	109 aa		18.79	■□□□□ 0.6
CPNE1-223	ENST00000475146	TAGLN	Q01995	201 aa	Known RBP	18.79	■□□□□ 0.6
CPNE1-223	ENST00000475146	KPRP	Q5T749	579 aa	Predicted RBP	18.79	■□□□□ 0.6
CPNE1-223	ENST00000475146	TMEM65	Q6PI78	240 aa		18.79	■□□□□ 0.6
CPNE1-223	ENST00000475146	MRPL41	Q8IXM3	137 aa	Known RBP	18.79	■□□□□ 0.6
CPNE1-223	ENST00000475146	DUX3	Q96PT4	197 aa		18.79	■□□□□ 0.6
CPNE1-223	ENST00000475146	TPSG1	Q9NRR2	321 aa		18.79	■□□□□ 0.6
CPNE1-223	ENST00000475146	FBXO7	Q9Y3I1	522 aa		18.79	■□□□□ 0.6
CPNE1-223	ENST00000475146	XRCC3	O43542	346 aa		18.78	■□□□□ 0.6
CPNE1-223	ENST00000475146	RRAS	P10301	218 aa		18.78	■□□□□ 0.6
CPNE1-223	ENST00000475146	PPIF	P30405	207 aa	Known RBP	18.78	■□□□□ 0.6
CPNE1-223	ENST00000475146	DUT	P33316	252 aa	Known RBP	18.78	■□□□□ 0.6
CPNE1-223	ENST00000475146	HOGA1	Q86XE5	327 aa		18.78	■□□□□ 0.6
CPNE1-223	ENST00000475146	ZNF645	Q8N7E2	425 aa		18.78	■□□□□ 0.6
CPNE1-223	ENST00000475146	KCTD12	Q96CX2	325 aa	Known RBP	18.78	■□□□□ 0.6
CPNE1-223	ENST00000475146	RCC1L	Q96I51	464 aa	Known RBP	18.78	■□□□□ 0.6
CPNE1-223	ENST00000475146		A0A1W2PN81	502 aa		18.77	■□□□□ 0.6
CPNE1-223	ENST00000475146	SHOX	O15266	292 aa		18.77	■□□□□ 0.6
CPNE1-223	ENST00000475146	HLA-DQB1	P01920	261 aa		18.77	■□□□□ 0.6
CPNE1-223	ENST00000475146	CHRNA7	P36544	502 aa		18.77	■□□□□ 0.6
CPNE1-223	ENST00000475146	CDX1	P47902	265 aa	Predicted RBP	18.77	■□□□□ 0.6
CPNE1-223	ENST00000475146	LGALS7	P47929	136 aa		18.77	■□□□□ 0.6
CPNE1-223	ENST00000475146	DEFB136	Q30KP8	78 aa		18.77	■□□□□ 0.6
CPNE1-223	ENST00000475146	TMEM69	Q5SWH9	247 aa		18.77	■□□□□ 0.6
CPNE1-223	ENST00000475146	FAM103A1	Q9BTL3	118 aa	Known RBP	18.77	■□□□□ 0.6
CPNE1-223	ENST00000475146	IGKV1D-13	A0A0B4J2D9	117 aa		18.76	■□□□□ 0.59
CPNE1-223	ENST00000475146	MEIS3P1	A6NDR6	274 aa		18.76	■□□□□ 0.59
CPNE1-223	ENST00000475146	CCL24	O00175	119 aa		18.76	■□□□□ 0.59
CPNE1-223	ENST00000475146	PRB2	P02812	416 aa	Predicted RBP	18.76	■□□□□ 0.59
CPNE1-223	ENST00000475146	IGKV1-13	P0DP09	117 aa		18.76	■□□□□ 0.59
CPNE1-223	ENST00000475146	CBX5	P45973	191 aa		18.76	■□□□□ 0.59
CPNE1-223	ENST00000475146	CRIP2	P52943	208 aa	Predicted RBP	18.76	■□□□□ 0.59
CPNE1-223	ENST00000475146	RAB25	P57735	213 aa		18.76	■□□□□ 0.59
CPNE1-223	ENST00000475146	ZNF562	Q6V9R5	426 aa		18.76	■□□□□ 0.59
CPNE1-223	ENST00000475146	PPP1R27	Q86WC6	154 aa		18.76	■□□□□ 0.59
CPNE1-223	ENST00000475146	RAX2	Q96IS3	184 aa		18.76	■□□□□ 0.59
CPNE1-223	ENST00000475146	MRPS26	Q9BYN8	205 aa	Known RBP	18.76	■□□□□ 0.59
CPNE1-223	ENST00000475146	KLK15	Q9H2R5	256 aa		18.76	■□□□□ 0.59
CPNE1-223	ENST00000475146	IFT46	Q9NQC8	304 aa		18.76	■□□□□ 0.59
CPNE1-223	ENST00000475146	FOXA2	Q9Y261	457 aa	Predicted RBP	18.76	■□□□□ 0.59
CPNE1-223	ENST00000475146	LINC00473	A8K010	186 aa		18.75	■□□□□ 0.59
CPNE1-223	ENST00000475146	TUSC2	O75896	110 aa		18.75	■□□□□ 0.59
CPNE1-223	ENST00000475146	SLC22A5	O76082	557 aa		18.75	■□□□□ 0.59
CPNE1-223	ENST00000475146	CRYZL1	O95825	349 aa		18.75	■□□□□ 0.59
CPNE1-223	ENST00000475146	IGLV1-40	P01703	118 aa		18.75	■□□□□ 0.59
CPNE1-223	ENST00000475146	IGLV2-23	P01705	113 aa		18.75	■□□□□ 0.59
CPNE1-223	ENST00000475146	TAS2R20	P59543	309 aa		18.75	■□□□□ 0.59
CPNE1-223	ENST00000475146	GNB1	P62873	340 aa		18.75	■□□□□ 0.59
CPNE1-223	ENST00000475146	TMEM267	Q0VDI3	215 aa	Predicted RBP	18.75	■□□□□ 0.59
CPNE1-223	ENST00000475146	TMEM177	Q53S58	311 aa		18.75	■□□□□ 0.59
CPNE1-223	ENST00000475146	UNQ5815/PRO19632	Q6UWF5	114 aa		18.75	■□□□□ 0.59
CPNE1-223	ENST00000475146	KCTD9	Q7L273	389 aa		18.75	■□□□□ 0.59
CPNE1-223	ENST00000475146	TCTEX1D1	Q8N7M0	179 aa		18.75	■□□□□ 0.59
CPNE1-223	ENST00000475146	MINDY2	Q8NBR6	621 aa		18.75	■□□□□ 0.59
CPNE1-223	ENST00000475146	GRPEL2	Q8TAA5	225 aa		18.75	■□□□□ 0.59

Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms