RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 MYO3AQ8NEV4 1616 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 SIPA1L3O60292 1781 aaPredicted RBP2.88□□□□□ -1.95
UBR3-208ENST00000474426 PDCD11Q14690 1871 aaKnown RBP2.88□□□□□ -1.95
UBR3-208ENST00000474426 NCBP2LA6PVI3 153 aaKnown RBP2.88□□□□□ -1.95
UBR3-208ENST00000474426 ITGBL1O95965 494 aaPredicted RBP2.88□□□□□ -1.95
UBR3-208ENST00000474426 MYOD1P15172 320 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 NMUP48645 174 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 THBS3P49746 956 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 IZUMO4Q1ZYL8 232 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 LCN12Q6JVE5 192 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 PARM1Q6UWI2 310 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 ZNF534Q76KX8 674 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 TMEM150AQ86TG1 271 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 TGIF2LYQ8IUE0 185 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 VKORC1L1Q8N0U8 176 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 SSC4DQ8WTU2 575 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 SNRNP25Q9BV90 132 aaKnown RBP2.88□□□□□ -1.95
UBR3-208ENST00000474426 ZNF471Q9BX82 626 aaPredicted RBP2.88□□□□□ -1.95
UBR3-208ENST00000474426 RPRMQ9NS64 109 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 TMEM106BQ9NUM4 274 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 RNF7Q9UBF6 113 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 FZR1Q9UM11 496 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 A2ML1A8K2U0 1454 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 ARHGAP5Q13017 1502 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 GCC2Q8IWJ2 1684 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 AFDNP55196 1824 aaKnown RBP2.87□□□□□ -1.95
UBR3-208ENST00000474426 TMEM131Q92545 1883 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 A0A087X0T9 212 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 CCL15-CCL14A0A0B4J2E2 113 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 OR4C45A6NMZ5 311 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 DHRS3O75911 302 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 DUS4LO95620 317 aaKnown RBP2.87□□□□□ -1.95
UBR3-208ENST00000474426 H2BFMP0C1H6 154 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 CD99P14209 185 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 C1QTNF8P60827 252 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 PYDC2Q56P42 97 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 ZNF542PQ5EBM4 170 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 BVES-AS1Q5T3Y7 98 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 TNFAIP8L2Q6P589 184 aaPredicted RBP2.87□□□□□ -1.95
UBR3-208ENST00000474426 Q6ZTK2 550 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 ZNF695Q8IW36 515 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 ZIC4Q8N9L1 334 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 OR2M3Q8NG83 312 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 OR10G6Q8NH81 332 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 C15orf40Q8WUR7 153 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 ARPC1AQ92747 370 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 SHANK3Q9BYB0 1731 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 TMEM9BQ9NQ34 198 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 PARP11Q9NR21 331 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 HEBP1Q9NRV9 189 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 SIT1Q9Y3P8 196 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 PYGO1Q9Y3Y4 419 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 PLXNA4Q9HCM2 1894 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 FMN2Q9NZ56 1722 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 LRP5O75197 1615 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 A0A1W2PP11 408 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 IL3P08700 152 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 IFITM1P13164 125 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 LIFP15018 202 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 FKBP2P26885 142 aaKnown RBP2.87□□□□□ -1.95
UBR3-208ENST00000474426 APOC4P55056 127 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 LOXL3P58215 753 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 HERVK_113P63121 156 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 Q0VG73 95 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 SPATA45Q537H7 98 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 ZNF730Q6ZMV8 503 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 ATOH7Q8N100 152 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 SLC25A45Q8N413 288 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 Q8N976 141 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 OR5D14Q8NGL3 314 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 FANCD2OSQ96PS1 177 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 IMMP2LQ96T52 175 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 HES7Q9BYE0 225 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 TCEAL2Q9H3H9 227 aaPredicted RBP2.87□□□□□ -1.95
UBR3-208ENST00000474426 ASF1AQ9Y294 204 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 SCN11AQ9UI33 1791 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP2.87□□□□□ -1.95
UBR3-208ENST00000474426 C3orf70A6NLC5 250 aaPredicted RBP2.87□□□□□ -1.95
UBR3-208ENST00000474426 XKRYO14609 159 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 NPIPB7O75200 414 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 KLF7O75840 302 aaPredicted RBP2.87□□□□□ -1.95
UBR3-208ENST00000474426 IGKV1D-16P01601 117 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 HLA-DOAP06340 250 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 CTSEP14091 401 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 CTLA4P16410 223 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 RND3P61587 244 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 COL10A1Q03692 680 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 SGPP2Q8IWX5 399 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 ZNF709Q8N972 641 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 TMEM52Q8NDY8 209 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 OR10D3Q8NH80 312 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 ZPLD1Q8TCW7 415 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 BORCS7Q96B45 105 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 NEURL3Q96EH8 262 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 C20orf78Q9BR46 151 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 PRSS22Q9GZN4 317 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 AAMDCQ9H7C9 122 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 C21orf62Q9NYP8 219 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 CCDC167Q9P0B6 97 aa2.87□□□□□ -1.95
UBR3-208ENST00000474426 WRAP73Q9P2S5 460 aaPredicted RBP2.87□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms