RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 OR6C3Q9NZP0 311 aa12.53□□□□□ -0.4
LDLR-202ENST00000455727 ZNF98A6NK75 572 aa12.52□□□□□ -0.41
LDLR-202ENST00000455727 MARCH11A6NNE9 402 aa12.52□□□□□ -0.41
LDLR-202ENST00000455727 PMS2P5A8MQ11 134 aa12.52□□□□□ -0.41
LDLR-202ENST00000455727 ITGB1BP1O14713 200 aa12.52□□□□□ -0.41
LDLR-202ENST00000455727 PROP1O75360 226 aa12.52□□□□□ -0.41
LDLR-202ENST00000455727 SELENOVP59797 346 aa12.52□□□□□ -0.41
LDLR-202ENST00000455727 ZNF726P1Q15940 193 aa12.52□□□□□ -0.41
LDLR-202ENST00000455727 SPRNQ5BIV9 151 aa12.52□□□□□ -0.41
LDLR-202ENST00000455727 ALKBH2Q6NS38 261 aa12.52□□□□□ -0.41
LDLR-202ENST00000455727 ITLN1Q8WWA0 313 aa12.52□□□□□ -0.41
LDLR-202ENST00000455727 GNG12Q9UBI6 72 aa12.52□□□□□ -0.41
LDLR-202ENST00000455727 GAB2Q9UQC2 676 aa12.52□□□□□ -0.41
LDLR-202ENST00000455727 PUS1Q9Y606 427 aaKnown RBP eCLIP12.52□□□□□ -0.41
LDLR-202ENST00000455727 H3BQ15 152 aa12.51□□□□□ -0.41
LDLR-202ENST00000455727 RBFOX2O43251 390 aaKnown RBP eCLIP12.51□□□□□ -0.41
LDLR-202ENST00000455727 SPRY3O43610 288 aa12.51□□□□□ -0.41
LDLR-202ENST00000455727 CGB3P0DN86 165 aa12.51□□□□□ -0.41
LDLR-202ENST00000455727 CGB7P0DN87 165 aa12.51□□□□□ -0.41
LDLR-202ENST00000455727 MAS1LP35410 378 aa12.51□□□□□ -0.41
LDLR-202ENST00000455727 RAB5BP61020 215 aa12.51□□□□□ -0.41
LDLR-202ENST00000455727 NCR3LG1Q68D85 454 aa12.51□□□□□ -0.41
LDLR-202ENST00000455727 OR8G2PQ6IF36 304 aa12.51□□□□□ -0.41
LDLR-202ENST00000455727 ZNF561Q8N587 486 aa12.51□□□□□ -0.41
LDLR-202ENST00000455727 RCC1LQ96I51 464 aaKnown RBP12.51□□□□□ -0.41
LDLR-202ENST00000455727 TMEM147Q9BVK8 224 aa12.51□□□□□ -0.41
LDLR-202ENST00000455727 VSIRQ9H7M9 311 aa12.51□□□□□ -0.41
LDLR-202ENST00000455727 CISD1Q9NZ45 108 aaKnown RBP12.51□□□□□ -0.41
LDLR-202ENST00000455727 CLN8Q9UBY8 286 aa12.51□□□□□ -0.41
LDLR-202ENST00000455727 IL19Q9UHD0 177 aa12.51□□□□□ -0.41
LDLR-202ENST00000455727 DSCAML1Q8TD84 2053 aa12.51□□□□□ -0.41
LDLR-202ENST00000455727 IGHV3OR15-7A0A075B7D8 119 aa12.51□□□□□ -0.41
LDLR-202ENST00000455727 HPRT1P00492 218 aa12.51□□□□□ -0.41
LDLR-202ENST00000455727 PTAFRP25105 342 aa12.51□□□□□ -0.41
LDLR-202ENST00000455727 ZNF787Q6DD87 383 aa12.51□□□□□ -0.41
LDLR-202ENST00000455727 VHLLQ6RSH7 139 aa12.51□□□□□ -0.41
LDLR-202ENST00000455727 FAM180AQ6UWF9 173 aa12.51□□□□□ -0.41
LDLR-202ENST00000455727 ZNRF1Q8ND25 227 aa12.51□□□□□ -0.41
LDLR-202ENST00000455727 DSCAMO60469 2012 aa12.51□□□□□ -0.41
LDLR-202ENST00000455727 DOCK11Q5JSL3 2073 aa12.5□□□□□ -0.41
LDLR-202ENST00000455727 A0A087WWC5 75 aa12.5□□□□□ -0.41
LDLR-202ENST00000455727 UBE2L5PA0A1B0GUS4 154 aa12.5□□□□□ -0.41
LDLR-202ENST00000455727 MKRN2OSH3BPM6 223 aa12.5□□□□□ -0.41
LDLR-202ENST00000455727 ZG16O60844 167 aa12.5□□□□□ -0.41
LDLR-202ENST00000455727 DAOP14920 347 aa12.5□□□□□ -0.41
LDLR-202ENST00000455727 GNB2P62879 340 aa12.5□□□□□ -0.41
LDLR-202ENST00000455727 VWC2Q2TAL6 325 aa12.5□□□□□ -0.41
LDLR-202ENST00000455727 ZNF429Q86V71 674 aa12.5□□□□□ -0.41
LDLR-202ENST00000455727 CYB561D1Q8N8Q1 229 aa12.5□□□□□ -0.41
LDLR-202ENST00000455727 OR10P1Q8NGE3 313 aa12.5□□□□□ -0.41
LDLR-202ENST00000455727 R3HDM4Q96D70 268 aa12.5□□□□□ -0.41
LDLR-202ENST00000455727 RNF7Q9UBF6 113 aa12.5□□□□□ -0.41
LDLR-202ENST00000455727 HCFC1P51610 2035 aa12.5□□□□□ -0.41
LDLR-202ENST00000455727 C1orf196B1AJZ1 125 aa12.5□□□□□ -0.41
LDLR-202ENST00000455727 BCL2P10415 239 aa12.5□□□□□ -0.41
LDLR-202ENST00000455727 LINC00205P59089 165 aa12.5□□□□□ -0.41
LDLR-202ENST00000455727 FAM27E3Q08E93 113 aa12.5□□□□□ -0.41
LDLR-202ENST00000455727 HABP2Q14520 560 aaPredicted RBP12.5□□□□□ -0.41
LDLR-202ENST00000455727 LTC4SQ16873 150 aa12.5□□□□□ -0.41
LDLR-202ENST00000455727 SLC35E3Q7Z769 313 aa12.5□□□□□ -0.41
LDLR-202ENST00000455727 SDSLQ96GA7 329 aa12.5□□□□□ -0.41
LDLR-202ENST00000455727 P2RX4Q99571 388 aa12.5□□□□□ -0.41
LDLR-202ENST00000455727 GNG13Q9P2W3 67 aa12.5□□□□□ -0.41
LDLR-202ENST00000455727 CD40P25942 277 aa12.49□□□□□ -0.41
LDLR-202ENST00000455727 MRGPRGQ86SM5 289 aa12.49□□□□□ -0.41
LDLR-202ENST00000455727 NUP37Q8NFH4 326 aa12.49□□□□□ -0.41
LDLR-202ENST00000455727 ISOC2Q96AB3 205 aa12.49□□□□□ -0.41
LDLR-202ENST00000455727 MALSU1Q96EH3 234 aa12.49□□□□□ -0.41
LDLR-202ENST00000455727 TVP23CQ96ET8 276 aa12.49□□□□□ -0.41
LDLR-202ENST00000455727 NIPSNAP3BQ9BS92 247 aa12.49□□□□□ -0.41
LDLR-202ENST00000455727 GCM1Q9NP62 436 aa12.49□□□□□ -0.41
LDLR-202ENST00000455727 CALYQ9NYX4 217 aa12.49□□□□□ -0.41
LDLR-202ENST00000455727 CUL9Q8IWT3 2517 aa12.49□□□□□ -0.41
LDLR-202ENST00000455727 TANC2Q9HCD6 1990 aa12.49□□□□□ -0.41
LDLR-202ENST00000455727 RIF1Q5UIP0 2472 aaKnown RBP12.49□□□□□ -0.41
LDLR-202ENST00000455727 A0A1W2PPH5 198 aa12.49□□□□□ -0.41
LDLR-202ENST00000455727 MBP02144 154 aa12.49□□□□□ -0.41
LDLR-202ENST00000455727 RAB5AP20339 215 aa12.49□□□□□ -0.41
LDLR-202ENST00000455727 AGAP20933 346 aa12.49□□□□□ -0.41
LDLR-202ENST00000455727 KIR2DS2P43631 304 aa12.49□□□□□ -0.41
LDLR-202ENST00000455727 RAB7AP51149 207 aa12.49□□□□□ -0.41
LDLR-202ENST00000455727 EDDM3BP56851 147 aa12.49□□□□□ -0.41
LDLR-202ENST00000455727 LCN15Q6UWW0 184 aa12.49□□□□□ -0.41
LDLR-202ENST00000455727 Q8TCH9 128 aa12.49□□□□□ -0.41
LDLR-202ENST00000455727 ZDHHC16Q969W1 377 aa12.49□□□□□ -0.41
LDLR-202ENST00000455727 RAB39BQ96DA2 213 aa12.49□□□□□ -0.41
LDLR-202ENST00000455727 IFI27L2Q9H2X8 130 aa12.49□□□□□ -0.41
LDLR-202ENST00000455727 CEBPZOSA8MTT3 80 aa12.48□□□□□ -0.41
LDLR-202ENST00000455727 FCGR3BO75015 233 aa12.48□□□□□ -0.41
LDLR-202ENST00000455727 RBMXL2O75526 392 aaKnown RBP12.48□□□□□ -0.41
LDLR-202ENST00000455727 IGHV1-46P01743 117 aa12.48□□□□□ -0.41
LDLR-202ENST00000455727 CD55P08174 381 aa12.48□□□□□ -0.41
LDLR-202ENST00000455727 FBP1P09467 338 aa12.48□□□□□ -0.41
LDLR-202ENST00000455727 MDKP21741 143 aaPredicted RBP12.48□□□□□ -0.41
LDLR-202ENST00000455727 TNFSF4P23510 183 aa12.48□□□□□ -0.41
LDLR-202ENST00000455727 ZNF134P52741 427 aa12.48□□□□□ -0.41
LDLR-202ENST00000455727 TNFAIP6P98066 277 aaPredicted RBP12.48□□□□□ -0.41
LDLR-202ENST00000455727 PDLIM3Q53GG5 364 aaPredicted RBP12.48□□□□□ -0.41
LDLR-202ENST00000455727 C22orf34Q6ZV56 151 aa12.48□□□□□ -0.41
LDLR-202ENST00000455727 SSX7Q7RTT5 188 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms