RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 E7EQL1 145 aa11.33□□□□□ -0.6
CLK3-203ENST00000454830 F12P00748 615 aaPredicted RBP11.33□□□□□ -0.6
CLK3-203ENST00000454830 UTF1Q5T230 341 aa11.33□□□□□ -0.6
CLK3-203ENST00000454830 RAB9BQ9NP90 201 aa11.33□□□□□ -0.6
CLK3-203ENST00000454830 C19orf12Q9NSK7 152 aa11.33□□□□□ -0.6
CLK3-203ENST00000454830 TOR1AO14656 332 aa11.33□□□□□ -0.6
CLK3-203ENST00000454830 SULT1A1P50225 295 aa11.33□□□□□ -0.6
CLK3-203ENST00000454830 RPL31P62899 125 aaKnown RBP11.33□□□□□ -0.6
CLK3-203ENST00000454830 RNASE6Q93091 150 aaKnown RBP11.33□□□□□ -0.6
CLK3-203ENST00000454830 TMEM218A2RU14 115 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 MUC1P15941 1255 aaPredicted RBP11.32□□□□□ -0.6
CLK3-203ENST00000454830 CA7P43166 264 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 PAX9P55771 341 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 STUMQ69YW2 141 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 OR4A16Q8NH70 328 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 ZCCHC14Q8WYQ9 949 aaKnown RBP11.32□□□□□ -0.6
CLK3-203ENST00000454830 GINS3Q9BRX5 216 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 RBKSQ9H477 322 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 MARCH11A6NNE9 402 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 LYNX1G3V0Z9 82 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 GPR37O15354 613 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 LYNX1P0DP58 116 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 ZNF134P52741 427 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 HBG1P69891 147 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 HBG2P69892 147 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 BAXQ07812 192 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 MST1LQ2TV78 715 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 ATRAIDQ6UW56 229 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 ZNF66Q6ZN08 573 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 ZDHHC16Q969W1 377 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 SMIM8Q96KF7 97 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 ATP5SQ99766 215 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 MS4A5Q9H3V2 200 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 RNF115Q9Y4L5 304 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 HIVEP3Q5T1R4 2406 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 CACNA1BQ00975 2339 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 KBTBD11-OT1A0A1B0GTJ5 212 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 A0A1B0GWJ7 208 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 hADV38S2A0JD32 116 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 DFFBO76075 338 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 CHRNB4P30926 498 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 MRPS11P82912 194 aaKnown RBP11.32□□□□□ -0.6
CLK3-203ENST00000454830 TNFRSF9Q07011 255 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 IL34Q6ZMJ4 242 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 EIF4E3Q8N5X7 224 aaKnown RBP11.32□□□□□ -0.6
CLK3-203ENST00000454830 CLCC1Q96S66 551 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 DIRC2Q96SL1 478 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 MALRD1Q5VYJ5 2156 aa11.32□□□□□ -0.6
CLK3-203ENST00000454830 SPP1P10451 314 aa11.31□□□□□ -0.6
CLK3-203ENST00000454830 RSG1Q9BU20 258 aa11.31□□□□□ -0.6
CLK3-203ENST00000454830 PARP11Q9NR21 331 aa11.31□□□□□ -0.6
CLK3-203ENST00000454830 TMEM106BQ9NUM4 274 aa11.31□□□□□ -0.6
CLK3-203ENST00000454830 JKAMPQ9P055 326 aa11.31□□□□□ -0.6
CLK3-203ENST00000454830 ZNRD1Q9P1U0 126 aa11.31□□□□□ -0.6
CLK3-203ENST00000454830 CACFD1Q9UGQ2 172 aa11.31□□□□□ -0.6
CLK3-203ENST00000454830 WSB1Q9Y6I7 421 aa11.31□□□□□ -0.6
CLK3-203ENST00000454830 ACACBO00763 2458 aa11.31□□□□□ -0.6
CLK3-203ENST00000454830 UBE2L5PA0A1B0GUS4 154 aa11.31□□□□□ -0.6
CLK3-203ENST00000454830 RNASEK-C17orf49H0YIS7 233 aa11.31□□□□□ -0.6
CLK3-203ENST00000454830 NDUFB3O43676 98 aa11.31□□□□□ -0.6
CLK3-203ENST00000454830 ZG16O60844 167 aa11.31□□□□□ -0.6
CLK3-203ENST00000454830 MMP9P14780 707 aa11.31□□□□□ -0.6
CLK3-203ENST00000454830 CCL3L1P16619 93 aa11.31□□□□□ -0.6
CLK3-203ENST00000454830 UQCC3Q6UW78 93 aa11.31□□□□□ -0.6
CLK3-203ENST00000454830 SFT2D1Q8WV19 159 aa11.31□□□□□ -0.6
CLK3-203ENST00000454830 SDSLQ96GA7 329 aa11.31□□□□□ -0.6
CLK3-203ENST00000454830 AGMATQ9BSE5 352 aa11.31□□□□□ -0.6
CLK3-203ENST00000454830 RELNP78509 3460 aa11.31□□□□□ -0.6
CLK3-203ENST00000454830 DUTP33316 252 aaKnown RBP11.31□□□□□ -0.6
CLK3-203ENST00000454830 ELLP55199 621 aaPredicted RBP11.31□□□□□ -0.6
CLK3-203ENST00000454830 ZNF788Q6ZQV5 615 aa11.31□□□□□ -0.6
CLK3-203ENST00000454830 UQCC1Q9NVA1 299 aa11.31□□□□□ -0.6
CLK3-203ENST00000454830 LAMP3Q9UQV4 416 aa11.31□□□□□ -0.6
CLK3-203ENST00000454830 ARFGEF3Q5TH69 2177 aa11.31□□□□□ -0.6
CLK3-203ENST00000454830 SMCO3A2RU48 225 aa11.3□□□□□ -0.6
CLK3-203ENST00000454830 YPEL1O60688 119 aa11.3□□□□□ -0.6
CLK3-203ENST00000454830 DANCRP0C864 163 aa11.3□□□□□ -0.6
CLK3-203ENST00000454830 GUCA2BQ16661 112 aa11.3□□□□□ -0.6
CLK3-203ENST00000454830 NCMAPQ5T1S8 102 aa11.3□□□□□ -0.6
CLK3-203ENST00000454830 DTD1Q8TEA8 209 aa11.3□□□□□ -0.6
CLK3-203ENST00000454830 GNPNAT1Q96EK6 184 aaPredicted RBP11.3□□□□□ -0.6
CLK3-203ENST00000454830 YPEL2Q96QA6 119 aa11.3□□□□□ -0.6
CLK3-203ENST00000454830 GFOD1Q9NXC2 390 aa11.3□□□□□ -0.6
CLK3-203ENST00000454830 EIF3GO75821 320 aaKnown RBP eCLIP11.3□□□□□ -0.6
CLK3-203ENST00000454830 MMP23AO75900 390 aa11.3□□□□□ -0.6
CLK3-203ENST00000454830 SLC25A6P12236 298 aa11.3□□□□□ -0.6
CLK3-203ENST00000454830 CD300LFQ8TDQ1 290 aa11.3□□□□□ -0.6
CLK3-203ENST00000454830 KIAA1324LA8MWY0 1029 aaPredicted RBP11.3□□□□□ -0.6
CLK3-203ENST00000454830 SHISA9B4DS77 424 aa11.3□□□□□ -0.6
CLK3-203ENST00000454830 IFNA10P01566 189 aa11.3□□□□□ -0.6
CLK3-203ENST00000454830 APOBEC3AP31941 199 aaPredicted RBP11.3□□□□□ -0.6
CLK3-203ENST00000454830 RAB7AP51149 207 aa11.3□□□□□ -0.6
CLK3-203ENST00000454830 SLC38A11Q08AI6 406 aa11.3□□□□□ -0.6
CLK3-203ENST00000454830 C17orf58Q2M2W7 97 aa11.3□□□□□ -0.6
CLK3-203ENST00000454830 LRRC10Q5BKY1 277 aa11.3□□□□□ -0.6
CLK3-203ENST00000454830 FAM209AQ5JX71 171 aa11.3□□□□□ -0.6
CLK3-203ENST00000454830 IQCF2Q8IXL9 164 aa11.3□□□□□ -0.6
CLK3-203ENST00000454830 HEYLQ9NQ87 328 aaPredicted RBP11.3□□□□□ -0.6
CLK3-203ENST00000454830 IDI2-AS1Q9NZ38 188 aa11.3□□□□□ -0.6
CLK3-203ENST00000454830 STRAPQ9Y3F4 350 aaKnown RBP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms