RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 CA7P43166 264 aa6.26□□□□□ -1.41
SYNE1-213ENST00000448038 RPL8P62917 257 aaKnown RBP6.26□□□□□ -1.41
SYNE1-213ENST00000448038 LGALSLQ3ZCW2 172 aaPredicted RBP6.26□□□□□ -1.41
SYNE1-213ENST00000448038 ZNF320A2RRD8 509 aa6.26□□□□□ -1.41
SYNE1-213ENST00000448038 RNASEK-C17orf49H0YIS7 233 aa6.26□□□□□ -1.41
SYNE1-213ENST00000448038 TRIM77I1YAP6 450 aa6.26□□□□□ -1.41
SYNE1-213ENST00000448038 SLC25A17O43808 307 aa6.26□□□□□ -1.41
SYNE1-213ENST00000448038 MBPP02686 304 aaPredicted RBP6.26□□□□□ -1.41
SYNE1-213ENST00000448038 FBP1P09467 338 aa6.26□□□□□ -1.41
SYNE1-213ENST00000448038 LCN2P80188 198 aa6.26□□□□□ -1.41
SYNE1-213ENST00000448038 PRR27Q6MZM9 219 aa6.26□□□□□ -1.41
SYNE1-213ENST00000448038 MMD2Q8IY49 270 aa6.26□□□□□ -1.41
SYNE1-213ENST00000448038 C9orf62Q8N4C0 152 aa6.26□□□□□ -1.41
SYNE1-213ENST00000448038 SLC24A4Q8NFF2 622 aa6.26□□□□□ -1.41
SYNE1-213ENST00000448038 BLNKQ8WV28 456 aa6.26□□□□□ -1.41
SYNE1-213ENST00000448038 GPR146Q96CH1 333 aa6.26□□□□□ -1.41
SYNE1-213ENST00000448038 TVP23CQ96ET8 276 aa6.26□□□□□ -1.41
SYNE1-213ENST00000448038 GRAMD2BQ96HH9 432 aa6.26□□□□□ -1.41
SYNE1-213ENST00000448038 IGHV3-21A0A0B4J1V1 117 aa6.26□□□□□ -1.41
SYNE1-213ENST00000448038 TM4SF5O14894 197 aa6.26□□□□□ -1.41
SYNE1-213ENST00000448038 HLA-GP17693 338 aa6.26□□□□□ -1.41
SYNE1-213ENST00000448038 FGF8P55075 233 aaPredicted RBP6.26□□□□□ -1.41
SYNE1-213ENST00000448038 SPCS3P61009 180 aa6.26□□□□□ -1.41
SYNE1-213ENST00000448038 SELENOHQ8IZQ5 122 aaKnown RBP6.26□□□□□ -1.41
SYNE1-213ENST00000448038 SLC25A28Q96A46 364 aa6.26□□□□□ -1.41
SYNE1-213ENST00000448038 NKX6-2Q9C056 277 aaPredicted RBP6.26□□□□□ -1.41
SYNE1-213ENST00000448038 PARP11Q9NR21 331 aa6.26□□□□□ -1.41
SYNE1-213ENST00000448038 MMP26Q9NRE1 261 aa6.26□□□□□ -1.41
SYNE1-213ENST00000448038 TRBV23-1A0A0A0MS06 115 aa6.25□□□□□ -1.41
SYNE1-213ENST00000448038 CXorf66Q5JRM2 361 aaPredicted RBP6.25□□□□□ -1.41
SYNE1-213ENST00000448038 ZNF474Q6S9Z5 364 aaPredicted RBP6.25□□□□□ -1.41
SYNE1-213ENST00000448038 ZNF524Q96C55 264 aa6.25□□□□□ -1.41
SYNE1-213ENST00000448038 TMEM140Q9NV12 185 aa6.25□□□□□ -1.41
SYNE1-213ENST00000448038 IGHV3OR16-10A0A075B7F0 116 aa6.25□□□□□ -1.41
SYNE1-213ENST00000448038 MARCH11A6NNE9 402 aa6.25□□□□□ -1.41
SYNE1-213ENST00000448038 KCNAB3O43448 404 aa6.25□□□□□ -1.41
SYNE1-213ENST00000448038 S1PR2O95136 353 aa6.25□□□□□ -1.41
SYNE1-213ENST00000448038 FBLN5Q9UBX5 448 aa6.25□□□□□ -1.41
SYNE1-213ENST00000448038 GAB2Q9UQC2 676 aa6.25□□□□□ -1.41
SYNE1-213ENST00000448038 AKAP6Q13023 2319 aa6.25□□□□□ -1.41
SYNE1-213ENST00000448038 C5orf63A6NC05 138 aa6.25□□□□□ -1.41
SYNE1-213ENST00000448038 LYNX1G3V0Z9 82 aa6.25□□□□□ -1.41
SYNE1-213ENST00000448038 OR2C1O95371 312 aa6.25□□□□□ -1.41
SYNE1-213ENST00000448038 PTBP3O95758 552 aaKnown RBP6.25□□□□□ -1.41
SYNE1-213ENST00000448038 IGHV1-46P01743 117 aa6.25□□□□□ -1.41
SYNE1-213ENST00000448038 SLC25A5P05141 298 aaKnown RBP6.25□□□□□ -1.41
SYNE1-213ENST00000448038 LYNX1P0DP58 116 aa6.25□□□□□ -1.41
SYNE1-213ENST00000448038 NHLH2Q02577 135 aa6.25□□□□□ -1.41
SYNE1-213ENST00000448038 TEX29Q8N6K0 151 aa6.25□□□□□ -1.41
SYNE1-213ENST00000448038 CHAC2Q8WUX2 184 aa6.25□□□□□ -1.41
SYNE1-213ENST00000448038 SAMD10Q9BYL1 202 aa6.25□□□□□ -1.41
SYNE1-213ENST00000448038 TLNRD1Q9H1K6 362 aa6.25□□□□□ -1.41
SYNE1-213ENST00000448038 OR5AC2Q9NZP5 309 aa6.25□□□□□ -1.41
SYNE1-213ENST00000448038 TNFSF18Q9UNG2 199 aa6.25□□□□□ -1.41
SYNE1-213ENST00000448038 COL4A3Q01955 1670 aa6.25□□□□□ -1.41
SYNE1-213ENST00000448038 TMEM41BQ5BJD5 291 aa6.25□□□□□ -1.41
SYNE1-213ENST00000448038 FAM78BQ5VT40 261 aa6.25□□□□□ -1.41
SYNE1-213ENST00000448038 MBNL2Q5VZF2 373 aaKnown RBP6.25□□□□□ -1.41
SYNE1-213ENST00000448038 DHRS7BQ6IAN0 325 aaPredicted RBP6.25□□□□□ -1.41
SYNE1-213ENST00000448038 TEPPQ6URK8 271 aa6.25□□□□□ -1.41
SYNE1-213ENST00000448038 NECAP1Q8NC96 275 aa6.25□□□□□ -1.41
SYNE1-213ENST00000448038 OR4C13Q8NGP0 309 aa6.25□□□□□ -1.41
SYNE1-213ENST00000448038 PLPPR1Q8TBJ4 325 aa6.25□□□□□ -1.41
SYNE1-213ENST00000448038 Q8WTZ3 238 aa6.25□□□□□ -1.41
SYNE1-213ENST00000448038 FAM222BQ8WU58 562 aa6.25□□□□□ -1.41
SYNE1-213ENST00000448038 ZNF331Q9NQX6 463 aaPredicted RBP6.25□□□□□ -1.41
SYNE1-213ENST00000448038 ADAMTS9Q9P2N4 1935 aa6.25□□□□□ -1.41
SYNE1-213ENST00000448038 KBTBD11-OT1A0A1B0GTJ5 212 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 ZNF737O75373 536 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 AANATQ16613 207 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 RPL39P5Q59GN2 51 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 MRPL30Q8TCC3 161 aaKnown RBP6.24□□□□□ -1.41
SYNE1-213ENST00000448038 OR10C1Q96KK4 312 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 PFDN5Q99471 154 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 RNF2Q99496 336 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 GFI1Q99684 422 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 WSB1Q9Y6I7 421 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 DEDDO75618 318 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 WT1P19544 449 aaPredicted RBP6.24□□□□□ -1.41
SYNE1-213ENST00000448038 MEF2CQ06413 473 aaPredicted RBP6.24□□□□□ -1.41
SYNE1-213ENST00000448038 PCSK4Q6UW60 755 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 TMEM252Q8N6L7 170 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 OR2A4O95047 310 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 TFF1P04155 84 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 B2MP61769 119 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 UBE2L3P68036 154 aaKnown RBP6.24□□□□□ -1.41
SYNE1-213ENST00000448038 HIST1H3AP68431 136 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 ZNF90Q03938 601 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 TMEM187Q14656 261 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 IZUMO4Q1ZYL8 232 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 HCP5Q6MZN7 132 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 FOXL2NBQ6ZUU3 175 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 VKORC1L1Q8N0U8 176 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 OR4X1Q8NH49 305 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 OR2A7Q96R45 310 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 RBKSQ9H477 322 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 TECRQ9NZ01 308 aaKnown RBP6.24□□□□□ -1.41
SYNE1-213ENST00000448038 SPP1P10451 314 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 MMP9P14780 707 aa6.24□□□□□ -1.41
SYNE1-213ENST00000448038 OR5R1Q8NH85 324 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms