RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 SEBOXQ9HB31 216 aaPredicted RBP10.06□□□□□ -0.8
MSH6-204ENST00000445503 MPLP40238 635 aa10.05□□□□□ -0.8
MSH6-204ENST00000445503 HTD2P86397 168 aa10.05□□□□□ -0.8
MSH6-204ENST00000445503 COL10A1Q03692 680 aa10.05□□□□□ -0.8
MSH6-204ENST00000445503 FBXW9Q5XUX1 488 aa10.05□□□□□ -0.8
MSH6-204ENST00000445503 Q8IYB0 196 aa10.05□□□□□ -0.8
MSH6-204ENST00000445503 CIB3Q96Q77 187 aaPredicted RBP10.05□□□□□ -0.8
MSH6-204ENST00000445503 IL17BQ9UHF5 180 aa10.05□□□□□ -0.8
MSH6-204ENST00000445503 PKIAP61925 76 aa10.05□□□□□ -0.8
MSH6-204ENST00000445503 OR8G5Q8NG78 346 aa10.05□□□□□ -0.8
MSH6-204ENST00000445503 OR4X1Q8NH49 305 aa10.05□□□□□ -0.8
MSH6-204ENST00000445503 FER1L6-AS2Q96M78 137 aa10.05□□□□□ -0.8
MSH6-204ENST00000445503 CTDSP1Q9GZU7 261 aa10.05□□□□□ -0.8
MSH6-204ENST00000445503 ZDHHC11Q9H8X9 412 aa10.05□□□□□ -0.8
MSH6-204ENST00000445503 NDUFB4O95168 129 aa10.05□□□□□ -0.8
MSH6-204ENST00000445503 HIST3H2BBQ8N257 126 aa10.05□□□□□ -0.8
MSH6-204ENST00000445503 ZNF703Q9H7S9 590 aaPredicted RBP10.05□□□□□ -0.8
MSH6-204ENST00000445503 AQP7O14520 342 aa10.04□□□□□ -0.8
MSH6-204ENST00000445503 SSTR5P35346 364 aa10.04□□□□□ -0.8
MSH6-204ENST00000445503 WNT5AP41221 380 aa10.04□□□□□ -0.8
MSH6-204ENST00000445503 THBS3P49746 956 aa10.04□□□□□ -0.8
MSH6-204ENST00000445503 RAB31Q13636 194 aa10.04□□□□□ -0.8
MSH6-204ENST00000445503 VKORC1L1Q8N0U8 176 aa10.04□□□□□ -0.8
MSH6-204ENST00000445503 OR2Z1Q8NG97 314 aa10.04□□□□□ -0.8
MSH6-204ENST00000445503 DCTN5Q9BTE1 182 aa10.04□□□□□ -0.8
MSH6-204ENST00000445503 LHX2P50458 406 aa10.04□□□□□ -0.8
MSH6-204ENST00000445503 PCSK4Q6UW60 755 aa10.04□□□□□ -0.8
MSH6-204ENST00000445503 OR51G1Q8NGK1 321 aa10.04□□□□□ -0.8
MSH6-204ENST00000445503 OR1P1Q8NH06 330 aa10.04□□□□□ -0.8
MSH6-204ENST00000445503 ABHD5Q8WTS1 349 aa10.04□□□□□ -0.8
MSH6-204ENST00000445503 FGF23Q9GZV9 251 aaPredicted RBP10.04□□□□□ -0.8
MSH6-204ENST00000445503 ODAMA1E959 279 aa10.04□□□□□ -0.8
MSH6-204ENST00000445503 C17orf98A8MV24 154 aa10.04□□□□□ -0.8
MSH6-204ENST00000445503 FAM90A2PQ658T7 463 aa10.04□□□□□ -0.8
MSH6-204ENST00000445503 EDARADDQ8WWZ3 215 aa10.04□□□□□ -0.8
MSH6-204ENST00000445503 LSM10Q969L4 123 aaKnown RBP10.04□□□□□ -0.8
MSH6-204ENST00000445503 R3HDM4Q96D70 268 aa10.04□□□□□ -0.8
MSH6-204ENST00000445503 VPS25Q9BRG1 176 aa10.04□□□□□ -0.8
MSH6-204ENST00000445503 FAM103A1Q9BTL3 118 aaKnown RBP10.04□□□□□ -0.8
MSH6-204ENST00000445503 A8MXE2 369 aa10.04□□□□□ -0.8
MSH6-204ENST00000445503 C1QL4Q86Z23 238 aa10.04□□□□□ -0.8
MSH6-204ENST00000445503 RPP25LQ8N5L8 163 aaKnown RBP10.04□□□□□ -0.8
MSH6-204ENST00000445503 PPP1R35Q8TAP8 253 aa10.04□□□□□ -0.8
MSH6-204ENST00000445503 SPSB4Q96A44 273 aa10.04□□□□□ -0.8
MSH6-204ENST00000445503 FOXJ2Q9P0K8 574 aa10.04□□□□□ -0.8
MSH6-204ENST00000445503 HEATR1Q9H583 2144 aaKnown RBP10.03□□□□□ -0.8
MSH6-204ENST00000445503 MYO15AQ9UKN7 3530 aa10.03□□□□□ -0.8
MSH6-204ENST00000445503 CLDN18P56856 261 aa10.03□□□□□ -0.8
MSH6-204ENST00000445503 LRRC29Q8WV35 223 aa10.03□□□□□ -0.8
MSH6-204ENST00000445503 TAAR6Q96RI8 345 aa10.03□□□□□ -0.8
MSH6-204ENST00000445503 RYDENQ9NUL5 291 aaKnown RBP10.03□□□□□ -0.8
MSH6-204ENST00000445503 ABCA1O95477 2261 aa10.03□□□□□ -0.8
MSH6-204ENST00000445503 A0A1B0GW64 132 aa10.03□□□□□ -0.8
MSH6-204ENST00000445503 C1QTNF9BB2RNN3 333 aa10.03□□□□□ -0.8
MSH6-204ENST00000445503 C10orf142B7Z368 130 aa10.03□□□□□ -0.8
MSH6-204ENST00000445503 KBTBD11O94819 623 aa10.03□□□□□ -0.8
MSH6-204ENST00000445503 IGHV2-70P01814 119 aa10.03□□□□□ -0.8
MSH6-204ENST00000445503 SP1P08047 785 aa10.03□□□□□ -0.8
MSH6-204ENST00000445503 ZFP36L1Q07352 338 aaKnown RBP10.03□□□□□ -0.8
MSH6-204ENST00000445503 P2RY6Q15077 328 aa10.03□□□□□ -0.8
MSH6-204ENST00000445503 ZNF766Q5HY98 468 aa10.03□□□□□ -0.8
MSH6-204ENST00000445503 SCRT1Q9BWW7 348 aa10.03□□□□□ -0.8
MSH6-204ENST00000445503 PGPEP1LA6NFU8 196 aa10.03□□□□□ -0.8
MSH6-204ENST00000445503 C12orf77C9JDV5 145 aa10.03□□□□□ -0.8
MSH6-204ENST00000445503 MGST1P10620 155 aaKnown RBP10.03□□□□□ -0.8
MSH6-204ENST00000445503 HIST1H1BP16401 226 aaKnown RBP10.03□□□□□ -0.8
MSH6-204ENST00000445503 RPL29P47914 159 aaKnown RBP10.03□□□□□ -0.8
MSH6-204ENST00000445503 GFRA1P56159 465 aa10.03□□□□□ -0.8
MSH6-204ENST00000445503 GCSAMLQ5JQS6 135 aa10.03□□□□□ -0.8
MSH6-204ENST00000445503 ACSM6Q6P461 480 aa10.03□□□□□ -0.8
MSH6-204ENST00000445503 LINC00596Q86U02 117 aa10.03□□□□□ -0.8
MSH6-204ENST00000445503 UHRF2Q96PU4 802 aa10.03□□□□□ -0.8
MSH6-204ENST00000445503 S1PR3Q99500 378 aa10.03□□□□□ -0.8
MSH6-204ENST00000445503 HIST1H2BLQ99880 126 aa10.03□□□□□ -0.8
MSH6-204ENST00000445503 RNF115Q9Y4L5 304 aa10.03□□□□□ -0.8
MSH6-204ENST00000445503 NEURL1O76050 574 aa10.02□□□□□ -0.8
MSH6-204ENST00000445503 RPL23P62829 140 aaKnown RBP10.02□□□□□ -0.8
MSH6-204ENST00000445503 ATP6V1FQ16864 119 aa10.02□□□□□ -0.8
MSH6-204ENST00000445503 SSX7Q7RTT5 188 aa10.02□□□□□ -0.8
MSH6-204ENST00000445503 TMEM178AQ8NBL3 297 aa10.02□□□□□ -0.8
MSH6-204ENST00000445503 SGMS2Q8NHU3 365 aa10.02□□□□□ -0.8
MSH6-204ENST00000445503 TMEM45BQ96B21 275 aa10.02□□□□□ -0.8
MSH6-204ENST00000445503 P2RX4Q99571 388 aa10.02□□□□□ -0.8
MSH6-204ENST00000445503 PSMG3Q9BT73 122 aaPredicted RBP10.02□□□□□ -0.8
MSH6-204ENST00000445503 TIMM8BQ9Y5J9 83 aaPredicted RBP10.02□□□□□ -0.8
MSH6-204ENST00000445503 IGHV3OR15-7A0A075B7D8 119 aa10.02□□□□□ -0.81
MSH6-204ENST00000445503 UBALD2Q8IYN6 164 aa10.02□□□□□ -0.81
MSH6-204ENST00000445503 MS4A10Q96PG2 267 aa10.02□□□□□ -0.81
MSH6-204ENST00000445503 PKIBQ9C010 78 aa10.02□□□□□ -0.81
MSH6-204ENST00000445503 CACNA1HO95180 2353 aa10.02□□□□□ -0.81
MSH6-204ENST00000445503 PKDREJQ9NTG1 2253 aa10.02□□□□□ -0.81
MSH6-204ENST00000445503 LOC102724200A0A096LPH7 203 aaPredicted RBP10.02□□□□□ -0.81
MSH6-204ENST00000445503 B4E171 279 aa10.02□□□□□ -0.81
MSH6-204ENST00000445503 HRASP01112 189 aa10.02□□□□□ -0.81
MSH6-204ENST00000445503 HOXA6P31267 233 aa10.02□□□□□ -0.81
MSH6-204ENST00000445503 TSPAN7P41732 249 aa10.02□□□□□ -0.81
MSH6-204ENST00000445503 UCP2P55851 309 aa10.02□□□□□ -0.81
MSH6-204ENST00000445503 SSTP61278 116 aa10.02□□□□□ -0.81
MSH6-204ENST00000445503 ZNF726P1Q15940 193 aa10.02□□□□□ -0.81
MSH6-204ENST00000445503 SMIM21Q3B7S5 101 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms