RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 LINC01545Q5VT33 79 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 ZNF324BQ6AW86 544 aaPredicted RBP6.26□□□□□ -1.41
VPS53-204ENST00000437048 Q6ZNB5 142 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 OR8B12Q8NGG6 310 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 OR10J6PQ8NGY7 276 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 RNASEH2CQ8TDP1 164 aaKnown RBP6.26□□□□□ -1.41
VPS53-204ENST00000437048 OSTCQ9NRP0 149 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 A0A1W2PPC1 479 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 CEACAM16Q2WEN9 425 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 FAM53AQ6NSI3 398 aaPredicted RBP6.26□□□□□ -1.41
VPS53-204ENST00000437048 FSCN3Q9NQT6 498 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 CASP8AP2Q9UKL3 1982 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 PEX11BO96011 259 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 ERVK11-1P61568 191 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 CD5P06127 495 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 PAX1P15863 534 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 ZNF714Q96N38 554 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 DOPEY1Q5JWR5 2465 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 ADAMTS7Q9UKP4 1686 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 OTX1P32242 354 aaPredicted RBP6.26□□□□□ -1.41
VPS53-204ENST00000437048 ZNF77Q15935 545 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 SELENOHQ8IZQ5 122 aaKnown RBP6.26□□□□□ -1.41
VPS53-204ENST00000437048 LYG1Q8N1E2 194 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 DMRTA2Q96SC8 542 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 EDN3P14138 238 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 GNB1P62873 340 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 GAPTQ8N292 157 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 OR4X1Q8NH49 305 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 ST6GALNAC2Q9UJ37 374 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 MMP17Q9ULZ9 603 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 MRAP2Q96G30 205 aa6.26□□□□□ -1.41
VPS53-204ENST00000437048 LOC105371267A0A1B0GV96 52 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 F8VVB4 439 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 F8VWA3 439 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 TSPAN2O60636 221 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 TMEM91Q6ZNR0 172 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 OR4A5Q8NH83 315 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 ELOVL5Q9NYP7 299 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 A8MWV9 139 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 UPK2O00526 184 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 FRRS1LQ9P0K9 344 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 MRPL27Q9P0M9 148 aaKnown RBP6.25□□□□□ -1.41
VPS53-204ENST00000437048 MGST3O14880 152 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 CXCL2P19875 107 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 TRBV5-7A0A0A0MS05 114 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 RBP4P02753 201 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 NR2C2APQ86WQ0 139 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 SFTPA2Q8IWL1 248 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 SFTPA1Q8IWL2 248 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 OR1B1Q8NGR6 318 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 TMEM56-RWDD3S4R434 201 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 LIPT2A6NK58 231 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 C21orf140B9A014 251 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 DLL1O00548 723 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 VSIG8P0DPA2 414 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 METTL26Q96S19 204 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 PCGF1Q9BSM1 259 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 SLC25A10Q9UBX3 287 aaPredicted RBP6.25□□□□□ -1.41
VPS53-204ENST00000437048 PAPPAQ13219 1627 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 C1orf194Q5T5A4 169 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 LRRC75AQ8NAA5 344 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 F2Z2F3 143 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 TNFSF13O75888 250 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 MT-CO3P00414 261 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 ZGLP1P0C6A0 271 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 RIPPLY3P57055 190 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 VSTM2LQ96N03 204 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 GEMIN7Q9H840 131 aaKnown RBP6.25□□□□□ -1.41
VPS53-204ENST00000437048 FCGR3BO75015 233 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 B4GALT1P15291 398 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 CTLA4P16410 223 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 NUTF2P61970 127 aaKnown RBP6.25□□□□□ -1.41
VPS53-204ENST00000437048 FBLN7Q53RD9 439 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 TMEM177Q53S58 311 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 SHISA5Q8N114 240 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 PHLDA3Q9Y5J5 127 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 PCOLCE2Q9UKZ9 415 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 C9JCJ5 164 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 B4GALT3O60512 393 aa6.25□□□□□ -1.41
VPS53-204ENST00000437048 FGF16O43320 207 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 SRIP30626 198 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 SLC25A48Q6ZT89 311 aaKnown RBP6.24□□□□□ -1.41
VPS53-204ENST00000437048 OR2Z1Q8NG97 314 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 MYEOVQ96EZ4 313 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 DOCK3Q8IZD9 2030 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 TMEM238C9JI98 176 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 IGHMP01871 453 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 GUCA2AQ02747 115 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 DRAM1Q8N682 238 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 TNRC6AQ8NDV7 1962 aaKnown RBP6.24□□□□□ -1.41
VPS53-204ENST00000437048 DNAJC30Q96LL9 226 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 C20orf141Q9NUB4 165 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 A0A1W2PRS3 328 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 MKRN2OSH3BPM6 223 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 DXOO77932 396 aaKnown RBP6.24□□□□□ -1.41
VPS53-204ENST00000437048 GAGE13Q4V321 117 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 ANKRD10Q9NXR5 420 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 FREM1Q5H8C1 2179 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 GNG10P50151 68 aa6.24□□□□□ -1.41
VPS53-204ENST00000437048 C17orf99Q6UX52 265 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms