RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 AKR1C8PQ5T2L2 129 aa3.3□□□□□ -1.88
CCDC88A-206ENST00000430086 ANKRD29Q8N6D5 301 aa3.3□□□□□ -1.88
CCDC88A-206ENST00000430086 FER1L6-AS1Q8NA97 138 aa3.3□□□□□ -1.88
CCDC88A-206ENST00000430086 SKA2Q8WVK7 121 aaPredicted RBP3.3□□□□□ -1.88
CCDC88A-206ENST00000430086 RMI2Q96E14 147 aa3.3□□□□□ -1.88
CCDC88A-206ENST00000430086 CNBD2Q96M20 576 aa3.3□□□□□ -1.88
CCDC88A-206ENST00000430086 TMEM70Q9BUB7 260 aa3.3□□□□□ -1.88
CCDC88A-206ENST00000430086 MIXL1Q9H2W2 232 aa3.3□□□□□ -1.88
CCDC88A-206ENST00000430086 WFDC1Q9HC57 220 aa3.3□□□□□ -1.88
CCDC88A-206ENST00000430086 KCNIP2Q9NS61 270 aa3.3□□□□□ -1.88
CCDC88A-206ENST00000430086 HSPB11Q9Y547 144 aa3.3□□□□□ -1.88
CCDC88A-206ENST00000430086 ZNFX1Q9P2E3 1918 aaKnown RBP3.3□□□□□ -1.88
CCDC88A-206ENST00000430086 GPATCH8Q9UKJ3 1502 aaKnown RBP3.29□□□□□ -1.88
CCDC88A-206ENST00000430086 WRNQ14191 1432 aaPredicted RBP eCLIP3.29□□□□□ -1.88
CCDC88A-206ENST00000430086 KIF24Q5T7B8 1368 aa3.29□□□□□ -1.88
CCDC88A-206ENST00000430086 LRCOL1A6NCL2 159 aa3.29□□□□□ -1.88
CCDC88A-206ENST00000430086 G3V2T6 193 aa3.29□□□□□ -1.88
CCDC88A-206ENST00000430086 K7ERS5 55 aa3.29□□□□□ -1.88
CCDC88A-206ENST00000430086 GSTZ1O43708 216 aaPredicted RBP3.29□□□□□ -1.88
CCDC88A-206ENST00000430086 MED6O75586 246 aa3.29□□□□□ -1.88
CCDC88A-206ENST00000430086 APOMO95445 188 aa3.29□□□□□ -1.88
CCDC88A-206ENST00000430086 CRYZL1O95825 349 aa3.29□□□□□ -1.88
CCDC88A-206ENST00000430086 HLA-DRB1P01911 266 aa3.29□□□□□ -1.88
CCDC88A-206ENST00000430086 SERPINE1P05121 402 aa3.29□□□□□ -1.88
CCDC88A-206ENST00000430086 SCGB1A1P11684 91 aa3.29□□□□□ -1.88
CCDC88A-206ENST00000430086 CXCL12P48061 93 aa3.29□□□□□ -1.88
CCDC88A-206ENST00000430086 HOXC5Q00444 222 aa3.29□□□□□ -1.88
CCDC88A-206ENST00000430086 GNA12Q03113 381 aa3.29□□□□□ -1.88
CCDC88A-206ENST00000430086 IL15RAQ13261 267 aa3.29□□□□□ -1.88
CCDC88A-206ENST00000430086 LAIR2Q6ISS4 152 aa3.29□□□□□ -1.88
CCDC88A-206ENST00000430086 MARCH3Q86UD3 253 aa3.29□□□□□ -1.88
CCDC88A-206ENST00000430086 YIPF7Q8N8F6 280 aa3.29□□□□□ -1.88
CCDC88A-206ENST00000430086 C15orf56Q8N910 161 aa3.29□□□□□ -1.88
CCDC88A-206ENST00000430086 GDPD1Q8N9F7 314 aa3.29□□□□□ -1.88
CCDC88A-206ENST00000430086 OR10K1Q8NGX5 313 aa3.29□□□□□ -1.88
CCDC88A-206ENST00000430086 OR52N1Q8NH53 320 aa3.29□□□□□ -1.88
CCDC88A-206ENST00000430086 GPR82Q96P67 336 aa3.29□□□□□ -1.88
CCDC88A-206ENST00000430086 ZNF2Q9BSG1 426 aaPredicted RBP3.29□□□□□ -1.88
CCDC88A-206ENST00000430086 PLA2G2FQ9BZM2 168 aa3.29□□□□□ -1.88
CCDC88A-206ENST00000430086 LHX9Q9NQ69 397 aa3.29□□□□□ -1.88
CCDC88A-206ENST00000430086 C14orf105Q9NVL8 296 aa3.29□□□□□ -1.88
CCDC88A-206ENST00000430086 ZNF222Q9UK12 451 aa3.29□□□□□ -1.88
CCDC88A-206ENST00000430086 ANAPC10Q9UM13 185 aa3.29□□□□□ -1.88
CCDC88A-206ENST00000430086 SLC35A3Q9Y2D2 325 aa3.29□□□□□ -1.88
CCDC88A-206ENST00000430086 PIKFYVEQ9Y2I7 2098 aa3.29□□□□□ -1.88
CCDC88A-206ENST00000430086 YTHDC2Q9H6S0 1430 aaKnown RBP3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 IGLV4-60A0A075B6I1 120 aa3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 TRAV26-2A0A0B4J265 109 aa3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 IGHV1-3A0A0C4DH29 117 aa3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 FAM236DA0A1B0GTK5 79 aa3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 SPRR5A0A1B0GTR4 108 aa3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 C4orf51C9J302 202 aa3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 C11orf94C9JXX5 98 aa3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 M0R381 172 aa3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 HMGB3O15347 200 aaKnown RBP3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 IGLV3-27P01718 113 aa3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 IGHMP01871 453 aa3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 HLA-DQB1P01920 261 aa3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 PFN1P07737 140 aaKnown RBP3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 ZNF806P0C7X5 589 aa3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 FAM236CP0DP71 79 aa3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 CYBAP13498 195 aa3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 CCL1P22362 96 aa3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 CDK2P24941 298 aa3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 SYCNQ0VAF6 134 aa3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 HES3Q5TGS1 186 aa3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 NANOGP8Q6NSW7 305 aa3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 ZFP1Q6P2D0 407 aa3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 NTM-AS1Q6ZSK4 140 aa3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 GOLT1AQ6ZVE7 132 aa3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 BAP18Q8IXM2 172 aa3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 OR11H6Q8NGC7 330 aa3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 OR8B12Q8NGG6 310 aa3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 MAFIPQ8WZ33 124 aa3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 C12orf43Q96C57 262 aaKnown RBP3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 LINC00477Q96M19 166 aa3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 TMEM147Q9BVK8 224 aa3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 MS4A8Q9BY19 250 aa3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 ZNF492Q9P255 531 aa3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 AK3Q9UIJ7 227 aa3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 OR51B4Q9Y5P0 310 aa3.28□□□□□ -1.88
CCDC88A-206ENST00000430086 PLCH2O75038 1416 aa3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 TMED7-TICAM2A0A0A6YYA0 188 aa3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 LINC00862A6NCI5 91 aa3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 LEUTXA8MZ59 168 aa3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 INMT-MINDY4F8WBC2 141 aa3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 AIPO00170 330 aa3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 PIRO00625 290 aa3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 OPN1SWP03999 348 aa3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 GYPCP04921 128 aa3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 PTHLHP12272 177 aa3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 ERP29P30040 261 aaKnown RBP3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 PHBP35232 272 aa3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 OPRK1P41145 380 aa3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 CMC4P56277 68 aaPredicted RBP3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 RHOBP62745 196 aa3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 RUNX1Q01196 453 aa3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 KCNJ8Q15842 424 aa3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 LRP11Q86VZ4 500 aa3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 OR2T4Q8NH00 348 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms