RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 ARMC1Q9NVT9 282 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 MRPL27Q9P0M9 148 aaKnown RBP2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 LRP12Q9Y561 859 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 ALG5Q9Y673 324 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 SCN3AQ9NY46 2000 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 SCN1AP35498 2009 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 TRAV27A0A087WT01 109 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 ELOA3CA0A087WX78 387 aaPredicted RBP2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 TMEM269A0A1B0GVZ9 245 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 METTL21EPA6NDL7 271 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 AIPO00170 330 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 BET1O15155 118 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 GKN3PP0CG01 181 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 IL11P20809 199 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 IMPA1P29218 277 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 ETV1P50549 477 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 SEC61BP60468 96 aaKnown RBP2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 LMO4P61968 165 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 AKIRIN2Q53H80 203 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 RNASE10Q5GAN6 216 aaKnown RBP2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 LPCAT4Q643R3 524 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 SLC48A1Q6P1K1 146 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 COX15Q7KZN9 410 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 TMEM17Q86X19 198 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 C17orf82Q86X59 251 aaPredicted RBP2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 C9orf40Q8IXQ3 194 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 TMEM255BQ8WV15 326 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 SMIM14Q96QK8 99 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 SEPHS2Q99611 448 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 APOL4Q9BPW4 351 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 THAP7Q9BT49 309 aaPredicted RBP2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 ACP6Q9NPH0 428 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 ZNF225Q9UK10 706 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 OARD1Q9Y530 152 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 STYXL1Q9Y6J8 313 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 AKAP13Q12802 2813 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 ANK3Q12955 4377 aaKnown RBP2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 PKD1L1Q8TDX9 2849 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 MYO5BQ9ULV0 1848 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 FAM236AA0A1B0GUQ0 79 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 FAM236BA0A1B0GV22 79 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 F8WEM9 126 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 L7N2F9 121 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 UPK1AO00322 258 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 NME6O75414 186 aaPredicted RBP2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 DFFBO76075 338 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 IL5P05113 134 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 HIST1H1EP10412 219 aaKnown RBP2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 CCL3L1P16619 93 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 LGALS3P17931 250 aaKnown RBP2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 KITLGP21583 273 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 DTYMKP23919 212 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 CLDN8P56748 225 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 FXYD7P58549 80 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 SSTP61278 116 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 VAMP2P63027 116 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 RPL18AQ02543 176 aaKnown RBP2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 ZNF791Q3KP31 576 aaPredicted RBP2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 YIF1BQ5BJH7 314 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 AADACL3Q5VUY0 350 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 CLEC6AQ6EIG7 209 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 FAM159AQ6UWV7 190 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 HOGA1Q86XE5 327 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 SNX29P2Q8IUI4 249 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 PPIL6Q8IXY8 311 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 KRTCAP2Q8N6L1 136 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 NRACQ8N912 160 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 NKAPP1Q8N9T2 125 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 CABLES2Q9BTV7 478 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 CHRDL1Q9BU40 450 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 VCXQ9H320 206 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 DAZ1Q9NQZ3 744 aaKnown RBP2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 RSL24D1Q9UHA3 163 aaKnown RBP2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 GPR132Q9UNW8 380 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 ST3GAL6Q9Y274 331 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 TIMM9Q9Y5J7 89 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 IGLV11-55A0A075B6I3 123 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 TRAV25A0A0B4J276 109 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 TRPC5OSA6NMA1 111 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 BIRC5O15392 142 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 MLNRO43193 412 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 ABHD2P08910 425 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 PSKH1P11801 424 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 CASP5P51878 434 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 UBE2G2P60604 165 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 RAB11AP62491 216 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 CD300EQ496F6 205 aaPredicted RBP2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 DNAL1Q4LDG9 190 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 TMEM69Q5SWH9 247 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 UTF1Q5T230 341 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 ADPRHL1Q8NDY3 354 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 BEST4Q8NFU0 473 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 CNRIP1Q96F85 164 aaPredicted RBP2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 PELI1Q96FA3 418 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 FAM103A1Q9BTL3 118 aaKnown RBP2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 ZNF430Q9H8G1 570 aaPredicted RBP2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 C12orf4Q9NQ89 552 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 LINC00474Q9P2X8 69 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 RHBDD3Q9Y3P4 386 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 S4R3C0 116 aa2.12□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 119.8 ms