RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 C1QTNF4Q9BXJ3 329 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 ADMP35318 185 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 ETDBQ3ZM63 59 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 C4orf45Q96LM5 186 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 TP73-AS1Q9UF72 201 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 LDB3O75112 727 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 CD38P28907 300 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 NMUP48645 174 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 TMEFF1Q8IYR6 380 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 MRPL13Q9BYD1 178 aaKnown RBP2.94□□□□□ -1.94
SYNE1-212ENST00000423061 TMEM50BP56557 158 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 ZNF121P58317 390 aaPredicted RBP2.94□□□□□ -1.94
SYNE1-212ENST00000423061 HES1Q14469 280 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 PDLIM3Q53GG5 364 aaPredicted RBP2.94□□□□□ -1.94
SYNE1-212ENST00000423061 PHF19Q5T6S3 580 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 ZNF595Q8IYB9 648 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 C1orf162Q8NEQ5 155 aaPredicted RBP2.94□□□□□ -1.94
SYNE1-212ENST00000423061 RAB40CQ96S21 281 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 LOC107984156A0A0G2JMH3 177 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 APOMO95445 188 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 ARL17AQ8IVW1 177 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 AKAP6Q13023 2319 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 MYLKQ15746 1914 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 PRSS29PA6NIE9 313 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 TNFP01375 233 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 ZNF585BQ52M93 769 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 HAPLN4Q86UW8 402 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 OR2A1Q8NGT9 310 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 PIGTQ969N2 578 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 MAP1LC3CQ9BXW4 147 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 ONECUT1Q9UBC0 465 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 MPPED1O15442 326 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 ZGLP1P0C6A0 271 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 ABHD17BQ5VST6 288 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 PTCRAQ6ISU1 281 aaPredicted RBP2.94□□□□□ -1.94
SYNE1-212ENST00000423061 TGIF2LYQ8IUE0 185 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 LRTM2Q8N967 370 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 KLHDC9Q8NEP7 349 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 OR10G4Q8NGN3 311 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 OR10G9Q8NGN4 311 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 OR10G7Q8NGN6 311 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 GALMQ96C23 342 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 YPEL4Q96NS1 127 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 PXMP4Q9Y6I8 212 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 EVI2AP22794 236 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 PFN3P60673 137 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 ADIPOQQ15848 244 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 DEFB118Q96PH6 123 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 HDHD3Q9BSH5 251 aaPredicted RBP2.94□□□□□ -1.94
SYNE1-212ENST00000423061 TSPAN2O60636 221 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 ACTL6BO94805 426 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 SLC48A1Q6P1K1 146 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 YRDCQ86U90 279 aaKnown RBP2.94□□□□□ -1.94
SYNE1-212ENST00000423061 OR5AL1P0C617 328 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 MBNL2Q5VZF2 373 aaKnown RBP2.94□□□□□ -1.94
SYNE1-212ENST00000423061 TMEM252Q8N6L7 170 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 VN1R3Q9BXE9 311 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 LMO1P25800 156 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 GNG4P50150 75 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 MRPL23Q16540 153 aaKnown RBP2.94□□□□□ -1.94
SYNE1-212ENST00000423061 LYRM7Q5U5X0 104 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 PRR7Q8TB68 274 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 ZPLD1Q8TCW7 415 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 SNCGO76070 127 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 LYL1P12980 280 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 P2RY2P41231 377 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 KLHDC7BQ96G42 594 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 DOK3Q7L591 496 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 ARPC1AQ92747 370 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 KCNK17Q96T54 332 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 ESPL1Q14674 2120 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 FMODQ06828 376 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 NHLRC2Q8NBF2 726 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 HBZP02008 142 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 SSTR5P35346 364 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 WDR38Q5JTN6 314 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 OR1L8Q8NGR8 309 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 OR4A16Q8NH70 328 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 OR1F12Q8NHA8 337 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 TUBD1Q9UJT1 453 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 ICAM5Q9UMF0 924 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 THSD7AQ9UPZ6 1657 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 A0A1W2PP55 124 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 NRG2O14511 850 aaPredicted RBP2.94□□□□□ -1.94
SYNE1-212ENST00000423061 CDIPTO14735 213 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 GLRXP35754 106 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 EDDM3BP56851 147 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 PCBD1P61457 104 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 POLR2AP24928 1970 aaKnown RBP2.94□□□□□ -1.94
SYNE1-212ENST00000423061 TRGV10A0A0A0MS01 117 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 KIR2DS1A0A191URI9 304 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 CYBAP13498 195 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 KIR2DS4P43632 304 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 KIR2DS1Q14954 304 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 CST6Q15828 149 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 RBMXL3Q8N7X1 1067 aaKnown RBP2.94□□□□□ -1.94
SYNE1-212ENST00000423061 ZNF501Q96CX3 271 aaPredicted RBP2.94□□□□□ -1.94
SYNE1-212ENST00000423061 ST20Q9HBF5 79 aa2.94□□□□□ -1.94
SYNE1-212ENST00000423061 XIRP1Q702N8 1843 aaKnown RBP2.94□□□□□ -1.94
SYNE1-212ENST00000423061 GAGE13Q4V321 117 aa2.94□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms