RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 ZNF703Q9H7S9 590 aaPredicted RBP9.01□□□□□ -0.97
USP54-204ENST00000422491 KCNS2Q9ULS6 477 aa9.01□□□□□ -0.97
USP54-204ENST00000422491 CFAP54Q96N23 3096 aa9.01□□□□□ -0.97
USP54-204ENST00000422491 TNRC6AQ8NDV7 1962 aaKnown RBP9□□□□□ -0.97
USP54-204ENST00000422491 IGHV1OR15-9A0A0B4J2B8 117 aa9□□□□□ -0.97
USP54-204ENST00000422491 GPX1P07203 203 aa9□□□□□ -0.97
USP54-204ENST00000422491 OR5G3P0C626 314 aa9□□□□□ -0.97
USP54-204ENST00000422491 CCL3P10147 92 aa9□□□□□ -0.97
USP54-204ENST00000422491 RAC3P60763 192 aa9□□□□□ -0.97
USP54-204ENST00000422491 HYAL1Q12794 435 aa9□□□□□ -0.97
USP54-204ENST00000422491 HLA-BQ31612 363 aa9□□□□□ -0.97
USP54-204ENST00000422491 GCSAMLQ5JQS6 135 aa9□□□□□ -0.97
USP54-204ENST00000422491 BAGE3Q86Y29 109 aa9□□□□□ -0.97
USP54-204ENST00000422491 BAGE2Q86Y30 109 aa9□□□□□ -0.97
USP54-204ENST00000422491 DRAM1Q8N682 238 aa9□□□□□ -0.97
USP54-204ENST00000422491 DLL3Q9NYJ7 618 aa9□□□□□ -0.97
USP54-204ENST00000422491 TRAV39A0A0B4J263 110 aa9□□□□□ -0.97
USP54-204ENST00000422491 NKX6-3A6NJ46 265 aa9□□□□□ -0.97
USP54-204ENST00000422491 DIRC3C9JPN6 131 aa9□□□□□ -0.97
USP54-204ENST00000422491 C3orf80F5H4A9 247 aa9□□□□□ -0.97
USP54-204ENST00000422491 ITGB1BP1O14713 200 aa9□□□□□ -0.97
USP54-204ENST00000422491 MMP23AO75900 390 aa9□□□□□ -0.97
USP54-204ENST00000422491 ZNF90Q03938 601 aa9□□□□□ -0.97
USP54-204ENST00000422491 COTL1Q14019 142 aa9□□□□□ -0.97
USP54-204ENST00000422491 SPATA45Q537H7 98 aa9□□□□□ -0.97
USP54-204ENST00000422491 KRTCAP3Q53RY4 240 aa9□□□□□ -0.97
USP54-204ENST00000422491 LEMD1Q68G75 181 aa9□□□□□ -0.97
USP54-204ENST00000422491 AAED1Q7RTV5 226 aa9□□□□□ -0.97
USP54-204ENST00000422491 OCC1Q8TAD7 63 aa9□□□□□ -0.97
USP54-204ENST00000422491 GMPPAQ96IJ6 420 aaPredicted RBP9□□□□□ -0.97
USP54-204ENST00000422491 CCDC74BQ96LY2 380 aa9□□□□□ -0.97
USP54-204ENST00000422491 LRFN3Q9BTN0 628 aa9□□□□□ -0.97
USP54-204ENST00000422491 IL36BQ9NZH7 164 aa9□□□□□ -0.97
USP54-204ENST00000422491 UQCR10Q9UDW1 63 aa9□□□□□ -0.97
USP54-204ENST00000422491 TRAV38-1A0A0B4J264 116 aa8.99□□□□□ -0.97
USP54-204ENST00000422491 LRRC30A6NM36 301 aa8.99□□□□□ -0.97
USP54-204ENST00000422491 C17orf112F2Z3M2 114 aa8.99□□□□□ -0.97
USP54-204ENST00000422491 G3V3Y1 287 aa8.99□□□□□ -0.97
USP54-204ENST00000422491 DNPH1O43598 174 aa8.99□□□□□ -0.97
USP54-204ENST00000422491 ZG16O60844 167 aa8.99□□□□□ -0.97
USP54-204ENST00000422491 RAMP3O60896 148 aa8.99□□□□□ -0.97
USP54-204ENST00000422491 HYPMO75409 117 aa8.99□□□□□ -0.97
USP54-204ENST00000422491 CELA2AP08217 269 aa8.99□□□□□ -0.97
USP54-204ENST00000422491 IGLC2P0DOY2 106 aa8.99□□□□□ -0.97
USP54-204ENST00000422491 IGLC3P0DOY3 106 aa8.99□□□□□ -0.97
USP54-204ENST00000422491 GLB1P16278 677 aa8.99□□□□□ -0.97
USP54-204ENST00000422491 THBS3P49746 956 aa8.99□□□□□ -0.97
USP54-204ENST00000422491 KLF3P57682 345 aaPredicted RBP8.99□□□□□ -0.97
USP54-204ENST00000422491 KRTDAPP60985 99 aa8.99□□□□□ -0.97
USP54-204ENST00000422491 RPS16P62249 146 aaKnown RBP8.99□□□□□ -0.97
USP54-204ENST00000422491 CCL7P80098 99 aa8.99□□□□□ -0.97
USP54-204ENST00000422491 RIPPLY2Q5TAB7 128 aa8.99□□□□□ -0.97
USP54-204ENST00000422491 SIGLECL1Q8N7X8 197 aa8.99□□□□□ -0.97
USP54-204ENST00000422491 APOBEC3DQ96AK3 386 aaPredicted RBP8.99□□□□□ -0.97
USP54-204ENST00000422491 LAMTOR2Q9Y2Q5 125 aa8.99□□□□□ -0.97
USP54-204ENST00000422491 ODAMA1E959 279 aa8.99□□□□□ -0.97
USP54-204ENST00000422491 EPOPA6NHQ4 379 aa8.99□□□□□ -0.97
USP54-204ENST00000422491 SH2D1BO14796 132 aa8.99□□□□□ -0.97
USP54-204ENST00000422491 ZNHIT1O43257 154 aa8.99□□□□□ -0.97
USP54-204ENST00000422491 FRMD6-AS1P0C7T7 363 aa8.99□□□□□ -0.97
USP54-204ENST00000422491 PTTG1IPP53801 180 aa8.99□□□□□ -0.97
USP54-204ENST00000422491 LGALS4P56470 323 aa8.99□□□□□ -0.97
USP54-204ENST00000422491 SLC23A3Q6PIS1 610 aa8.99□□□□□ -0.97
USP54-204ENST00000422491 ZDHHC16Q969W1 377 aa8.99□□□□□ -0.97
USP54-204ENST00000422491 QTRT1Q9BXR0 403 aaKnown RBP8.99□□□□□ -0.97
USP54-204ENST00000422491 ZNF552Q9H707 407 aaPredicted RBP8.99□□□□□ -0.97
USP54-204ENST00000422491 ZNF586Q9NXT0 402 aa8.99□□□□□ -0.97
USP54-204ENST00000422491 CLEC1BQ9P126 229 aa8.99□□□□□ -0.97
USP54-204ENST00000422491 RBM7Q9Y580 266 aaKnown RBP8.99□□□□□ -0.97
USP54-204ENST00000422491 K7EP13 123 aa8.98□□□□□ -0.97
USP54-204ENST00000422491 FCN1O00602 326 aa8.98□□□□□ -0.97
USP54-204ENST00000422491 SCRG1O75711 98 aa8.98□□□□□ -0.97
USP54-204ENST00000422491 HNF1AP20823 631 aa8.98□□□□□ -0.97
USP54-204ENST00000422491 G6PCP35575 357 aa8.98□□□□□ -0.97
USP54-204ENST00000422491 SUMO1P63165 101 aaKnown RBP8.98□□□□□ -0.97
USP54-204ENST00000422491 PSG7Q13046 419 aa8.98□□□□□ -0.97
USP54-204ENST00000422491 HLA-DRB5Q30154 266 aa8.98□□□□□ -0.97
USP54-204ENST00000422491 OR1L6Q8NGR2 347 aa8.98□□□□□ -0.97
USP54-204ENST00000422491 GNB4Q9HAV0 340 aa8.98□□□□□ -0.97
USP54-204ENST00000422491 PRDM6Q9NQX0 595 aa8.98□□□□□ -0.97
USP54-204ENST00000422491 TBL2Q9Y4P3 447 aaKnown RBP8.98□□□□□ -0.97
USP54-204ENST00000422491 SCO2A0A1W2PP80 73 aa8.98□□□□□ -0.97
USP54-204ENST00000422491 K7EN84 100 aa8.98□□□□□ -0.97
USP54-204ENST00000422491 SLC17A3O00476 420 aa8.98□□□□□ -0.97
USP54-204ENST00000422491 TOMM40O96008 361 aa8.98□□□□□ -0.97
USP54-204ENST00000422491 CDKN1BP46527 198 aa8.98□□□□□ -0.97
USP54-204ENST00000422491 NXPH1P58417 271 aa8.98□□□□□ -0.97
USP54-204ENST00000422491 UBALD1Q8TB05 177 aa8.98□□□□□ -0.97
USP54-204ENST00000422491 TXNDC17Q9BRA2 123 aa8.98□□□□□ -0.97
USP54-204ENST00000422491 FAM103A1Q9BTL3 118 aaKnown RBP8.98□□□□□ -0.97
USP54-204ENST00000422491 C19orf25Q9UFG5 118 aaPredicted RBP8.98□□□□□ -0.97
USP54-204ENST00000422491 DIDO1Q9BTC0 2240 aaKnown RBP8.98□□□□□ -0.97
USP54-204ENST00000422491 GJE1A6NN92 205 aa8.97□□□□□ -0.97
USP54-204ENST00000422491 IER3P46695 156 aa8.97□□□□□ -0.97
USP54-204ENST00000422491 B3GALT5-AS1P59052 145 aa8.97□□□□□ -0.97
USP54-204ENST00000422491 TMPRSS7Q7RTY8 843 aa8.97□□□□□ -0.97
USP54-204ENST00000422491 FAM58AQ8N1B3 248 aa8.97□□□□□ -0.97
USP54-204ENST00000422491 OR2M7Q8NG81 312 aa8.97□□□□□ -0.97
USP54-204ENST00000422491 STARD4Q96DR4 205 aa8.97□□□□□ -0.97
USP54-204ENST00000422491 NRN1Q9NPD7 142 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms