RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 ARG1P05089 322 aa4.02□□□□□ -1.77
VPS13A-207ENST00000419472 CD14P08571 375 aa4.02□□□□□ -1.77
VPS13A-207ENST00000419472 CST2P09228 141 aa4.02□□□□□ -1.77
VPS13A-207ENST00000419472 PATE4P0C8F1 98 aa4.02□□□□□ -1.77
VPS13A-207ENST00000419472 ARR3P36575 388 aa4.02□□□□□ -1.77
VPS13A-207ENST00000419472 HNRNPA3P51991 378 aaKnown RBP4.02□□□□□ -1.77
VPS13A-207ENST00000419472 SRPXP78539 464 aa4.02□□□□□ -1.77
VPS13A-207ENST00000419472 ARL6IP1Q15041 203 aa4.02□□□□□ -1.77
VPS13A-207ENST00000419472 OLFML2AQ68BL7 652 aa4.02□□□□□ -1.77
VPS13A-207ENST00000419472 NR2C2APQ86WQ0 139 aa4.02□□□□□ -1.77
VPS13A-207ENST00000419472 VKORC1L1Q8N0U8 176 aa4.02□□□□□ -1.77
VPS13A-207ENST00000419472 C10orf111Q8N326 155 aa4.02□□□□□ -1.77
VPS13A-207ENST00000419472 NUP37Q8NFH4 326 aa4.02□□□□□ -1.77
VPS13A-207ENST00000419472 STAG3L4Q8TBR4 150 aa4.02□□□□□ -1.77
VPS13A-207ENST00000419472 SMIM4Q8WVI0 70 aa4.02□□□□□ -1.77
VPS13A-207ENST00000419472 TP53RKQ96S44 253 aa4.02□□□□□ -1.77
VPS13A-207ENST00000419472 ATOH8Q96SQ7 321 aa4.02□□□□□ -1.77
VPS13A-207ENST00000419472 SULT4A1Q9BR01 284 aa4.02□□□□□ -1.77
VPS13A-207ENST00000419472 TIMM29Q9BSF4 260 aa4.02□□□□□ -1.77
VPS13A-207ENST00000419472 SLC2A9Q9NRM0 540 aa4.02□□□□□ -1.77
VPS13A-207ENST00000419472 FOXI3A8MTJ6 420 aaPredicted RBP4.01□□□□□ -1.77
VPS13A-207ENST00000419472 ZNF705GA8MUZ8 300 aaPredicted RBP4.01□□□□□ -1.77
VPS13A-207ENST00000419472 SAP18O00422 153 aaKnown RBP4.01□□□□□ -1.77
VPS13A-207ENST00000419472 MANBAO00462 879 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 GABRPO00591 440 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 TRAPPC6AO75865 159 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 NDUFB6O95139 128 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 SLC2A10O95528 541 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 AIFM1O95831 613 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 HLA-DPB1P04440 258 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 CTSLP07711 333 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 OR4A8P0C604 315 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 GNB3P16520 340 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 VDAC1P21796 283 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 CHRNB4P30926 498 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 CLDN12P56749 244 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 RPS23P62266 143 aaKnown RBP4.01□□□□□ -1.77
VPS13A-207ENST00000419472 OR2T2Q6IF00 324 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 OR2L2Q8NH16 312 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 OR51A7Q8NH64 312 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 PGLYRP4Q96LB8 373 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 TSSK6Q9BXA6 273 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 OR8D2Q9GZM6 311 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 TPT1P8Q9HAU6 139 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 PLXND1Q9Y4D7 1925 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 TECTAO75443 2155 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 DOCK9Q9BZ29 2069 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 A0A0A6YYH2 397 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 A6NIN4 97 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 A6NJ64 397 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 SMKR1H3BMG3 65 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 HPRT1P00492 218 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 UCHL1P09936 223 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 ZNF7P17097 686 aaPredicted RBP4.01□□□□□ -1.77
VPS13A-207ENST00000419472 PSMB5P28074 263 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 KRTAP10-2P60368 255 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 MRPS21P82921 87 aaKnown RBP4.01□□□□□ -1.77
VPS13A-207ENST00000419472 KRTAP19-4Q3LI73 84 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 SLC25A30Q5SVS4 291 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 ADAMTSL4-AS1Q5T5F5 129 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 C11orf87Q6NUJ2 197 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 TMPPEQ6ZT21 453 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 SMIM29Q86T20 159 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 TMEM183AQ8IXX5 376 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 RNF175Q8N4F7 328 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 SLC35G3Q8N808 338 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 ZNF485Q8NCK3 441 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 ABHD3Q8WU67 409 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 TMEM234Q8WY98 164 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 ARPC1AQ92747 370 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 TAF15Q92804 592 aaKnown RBP eCLIP4.01□□□□□ -1.77
VPS13A-207ENST00000419472 MUCL1Q96DR8 90 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 PIK3IP1Q96FE7 263 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 SCGB3A2Q96PL1 93 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 TBL1XR1Q9BZK7 514 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 KCNJ16Q9NPI9 418 aa4.01□□□□□ -1.77
VPS13A-207ENST00000419472 PCYT1BQ9Y5K3 369 aaPredicted RBP4.01□□□□□ -1.77
VPS13A-207ENST00000419472 HELZ2Q9BYK8 2649 aaKnown RBP4□□□□□ -1.77
VPS13A-207ENST00000419472 TRAV39A0A0B4J263 110 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 FAM166BA8MTA8 275 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 AMBPP02760 352 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 CT45A10P0DMU9 189 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 LIPCP11150 499 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 TPT1P13693 172 aaKnown RBP4□□□□□ -1.77
VPS13A-207ENST00000419472 SUB1P53999 127 aaKnown RBP eCLIP4□□□□□ -1.77
VPS13A-207ENST00000419472 APOC4P55056 127 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 TAF9Q16594 264 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 IQCJQ1A5X6 159 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 SMIM21Q3B7S5 101 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 OCIAD2Q56VL3 154 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 C12orf73Q69YU5 71 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 H1FOOQ8IZA3 346 aaPredicted RBP4□□□□□ -1.77
VPS13A-207ENST00000419472 C2orf73Q8N5S3 287 aaPredicted RBP4□□□□□ -1.77
VPS13A-207ENST00000419472 SLC35E1Q96K37 410 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 NRTNQ99748 197 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 PARLQ9H300 379 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 HS3ST2Q9Y278 367 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 ENPP4Q9Y6X5 453 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 DMXL1Q9Y485 3027 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 A0A1B0GU03 582 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms