RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 C5orf30Q96GV9 206 aa11.64□□□□□ -0.55
CCDC88A-204ENST00000413716 HCFC2Q9Y5Z7 792 aa11.64□□□□□ -0.55
CCDC88A-204ENST00000413716 PKDREJQ9NTG1 2253 aa11.64□□□□□ -0.55
CCDC88A-204ENST00000413716 COL9A3Q14050 684 aaPredicted RBP11.64□□□□□ -0.55
CCDC88A-204ENST00000413716 C12orf73Q69YU5 71 aa11.64□□□□□ -0.55
CCDC88A-204ENST00000413716 OR2H1Q9GZK4 316 aa11.64□□□□□ -0.55
CCDC88A-204ENST00000413716 DLL1O00548 723 aa11.64□□□□□ -0.55
CCDC88A-204ENST00000413716 GCM2O75603 506 aaPredicted RBP11.64□□□□□ -0.55
CCDC88A-204ENST00000413716 S100A7L2Q5SY68 101 aa11.64□□□□□ -0.55
CCDC88A-204ENST00000413716 RFLNAQ6ZTI6 216 aa11.64□□□□□ -0.55
CCDC88A-204ENST00000413716 LYZL2Q7Z4W2 148 aa11.64□□□□□ -0.55
CCDC88A-204ENST00000413716 FAM89BQ8N5H3 189 aa11.64□□□□□ -0.55
CCDC88A-204ENST00000413716 LILRA3Q8N6C8 439 aaPredicted RBP11.64□□□□□ -0.55
CCDC88A-204ENST00000413716 SIGLEC7Q9Y286 467 aa11.64□□□□□ -0.55
CCDC88A-204ENST00000413716 PATJQ8NI35 1801 aa11.64□□□□□ -0.55
CCDC88A-204ENST00000413716 MDKP21741 143 aaPredicted RBP11.64□□□□□ -0.55
CCDC88A-204ENST00000413716 MAJINQ3KP22 176 aa11.64□□□□□ -0.55
CCDC88A-204ENST00000413716 FAM106AQ4KMX7 169 aa11.64□□□□□ -0.55
CCDC88A-204ENST00000413716 C18orf15Q96N68 181 aa11.64□□□□□ -0.55
CCDC88A-204ENST00000413716 SH3BGRL3Q9H299 93 aa11.64□□□□□ -0.55
CCDC88A-204ENST00000413716 SAA1P0DJI8 122 aaPredicted RBP11.64□□□□□ -0.55
CCDC88A-204ENST00000413716 SPANXA1Q9NS26 97 aa11.64□□□□□ -0.55
CCDC88A-204ENST00000413716 CISD1Q9NZ45 108 aaKnown RBP11.64□□□□□ -0.55
CCDC88A-204ENST00000413716 PRSS53Q2L4Q9 553 aa11.64□□□□□ -0.55
CCDC88A-204ENST00000413716 PLXNA1Q9UIW2 1896 aa11.63□□□□□ -0.55
CCDC88A-204ENST00000413716 SFTPCP11686 197 aa11.63□□□□□ -0.55
CCDC88A-204ENST00000413716 KLK2P20151 261 aa11.63□□□□□ -0.55
CCDC88A-204ENST00000413716 LCN2P80188 198 aa11.63□□□□□ -0.55
CCDC88A-204ENST00000413716 ATXN8Q156A1 80 aa11.63□□□□□ -0.55
CCDC88A-204ENST00000413716 ZNF793Q6ZN11 406 aa11.63□□□□□ -0.55
CCDC88A-204ENST00000413716 ASB10Q8WXI3 467 aa11.63□□□□□ -0.55
CCDC88A-204ENST00000413716 INSL4Q14641 139 aa11.63□□□□□ -0.55
CCDC88A-204ENST00000413716 FXYD3Q14802 87 aa11.63□□□□□ -0.55
CCDC88A-204ENST00000413716 C14orf144Q96I85 54 aa11.63□□□□□ -0.55
CCDC88A-204ENST00000413716 ZNF430Q9H8G1 570 aaPredicted RBP11.63□□□□□ -0.55
CCDC88A-204ENST00000413716 ST6GALNAC3Q8NDV1 305 aa11.63□□□□□ -0.55
CCDC88A-204ENST00000413716 PGLYRP3Q96LB9 341 aa11.63□□□□□ -0.55
CCDC88A-204ENST00000413716 WNT10AQ9GZT5 417 aa11.63□□□□□ -0.55
CCDC88A-204ENST00000413716 GRIFINA4D1Z8 144 aa11.63□□□□□ -0.55
CCDC88A-204ENST00000413716 PLPP3O14495 311 aa11.63□□□□□ -0.55
CCDC88A-204ENST00000413716 SSTR5P35346 364 aa11.63□□□□□ -0.55
CCDC88A-204ENST00000413716 OR11H7Q8NGC8 314 aa11.62□□□□□ -0.55
CCDC88A-204ENST00000413716 RHNO1Q9BSD3 238 aa11.62□□□□□ -0.55
CCDC88A-204ENST00000413716 RNF7Q9UBF6 113 aa11.62□□□□□ -0.55
CCDC88A-204ENST00000413716 ANK1P16157 1881 aa11.62□□□□□ -0.55
CCDC88A-204ENST00000413716 TRAV30A0A087WSZ9 112 aa11.62□□□□□ -0.55
CCDC88A-204ENST00000413716 IL11RAQ14626 422 aa11.62□□□□□ -0.55
CCDC88A-204ENST00000413716 FBXO46Q6PJ61 603 aaPredicted RBP11.62□□□□□ -0.55
CCDC88A-204ENST00000413716 CST9LQ9H4G1 147 aa11.62□□□□□ -0.55
CCDC88A-204ENST00000413716 RGPD4Q7Z3J3 1758 aa11.62□□□□□ -0.55
CCDC88A-204ENST00000413716 DXOO77932 396 aaKnown RBP11.62□□□□□ -0.55
CCDC88A-204ENST00000413716 ASAH2BP0C7U1 165 aa11.62□□□□□ -0.55
CCDC88A-204ENST00000413716 ZNF645Q8N7E2 425 aa11.62□□□□□ -0.55
CCDC88A-204ENST00000413716 CCL28Q9NRJ3 127 aa11.62□□□□□ -0.55
CCDC88A-204ENST00000413716 RREB1Q92766 1687 aa11.62□□□□□ -0.55
CCDC88A-204ENST00000413716 GAPDHP04406 335 aaKnown RBP11.62□□□□□ -0.55
CCDC88A-204ENST00000413716 CD1AP06126 327 aa11.62□□□□□ -0.55
CCDC88A-204ENST00000413716 CTLA4P16410 223 aa11.62□□□□□ -0.55
CCDC88A-204ENST00000413716 TMEM155Q4W5P6 130 aa11.62□□□□□ -0.55
CCDC88A-204ENST00000413716 GOLT1AQ6ZVE7 132 aa11.62□□□□□ -0.55
CCDC88A-204ENST00000413716 TMEM86BQ8N661 226 aa11.62□□□□□ -0.55
CCDC88A-204ENST00000413716 H0Y980 276 aa11.62□□□□□ -0.55
CCDC88A-204ENST00000413716 ABHD1Q96SE0 405 aa11.62□□□□□ -0.55
CCDC88A-204ENST00000413716 C19orf24Q9BVV8 132 aa11.62□□□□□ -0.55
CCDC88A-204ENST00000413716 TRAV8-1A0A0A6YYK1 113 aa11.62□□□□□ -0.55
CCDC88A-204ENST00000413716 CA11O75493 328 aa11.62□□□□□ -0.55
CCDC88A-204ENST00000413716 FCARP24071 287 aa11.62□□□□□ -0.55
CCDC88A-204ENST00000413716 GLIPR1P48060 266 aa11.62□□□□□ -0.55
CCDC88A-204ENST00000413716 RPL31P62899 125 aaKnown RBP11.62□□□□□ -0.55
CCDC88A-204ENST00000413716 DNAJC4Q9NNZ3 241 aa11.62□□□□□ -0.55
CCDC88A-204ENST00000413716 H0Y8X5 98 aa11.61□□□□□ -0.55
CCDC88A-204ENST00000413716 NAPSAO96009 420 aa11.61□□□□□ -0.55
CCDC88A-204ENST00000413716 WIPI1Q5MNZ9 446 aaPredicted RBP11.61□□□□□ -0.55
CCDC88A-204ENST00000413716 NR2C2APQ86WQ0 139 aa11.61□□□□□ -0.55
CCDC88A-204ENST00000413716 LRTM2Q8N967 370 aa11.61□□□□□ -0.55
CCDC88A-204ENST00000413716 ELSPBP1Q96BH3 223 aa11.61□□□□□ -0.55
CCDC88A-204ENST00000413716 FNDC4Q9H6D8 234 aaPredicted RBP11.61□□□□□ -0.55
CCDC88A-204ENST00000413716 A8MWV9 139 aa11.61□□□□□ -0.55
CCDC88A-204ENST00000413716 GNRHR2Q96P88 292 aa11.61□□□□□ -0.55
CCDC88A-204ENST00000413716 TUBA4BQ9H853 241 aa11.61□□□□□ -0.55
CCDC88A-204ENST00000413716 PRR32B1ATL7 298 aa11.61□□□□□ -0.55
CCDC88A-204ENST00000413716 CTSVO60911 334 aa11.61□□□□□ -0.55
CCDC88A-204ENST00000413716 EML2O95834 649 aa11.61□□□□□ -0.55
CCDC88A-204ENST00000413716 EFNB2P52799 333 aa11.61□□□□□ -0.55
CCDC88A-204ENST00000413716 RPL8P62917 257 aaKnown RBP11.61□□□□□ -0.55
CCDC88A-204ENST00000413716 ZNF415Q09FC8 603 aa11.61□□□□□ -0.55
CCDC88A-204ENST00000413716 hCG_38984A0A1B0GV85 526 aa11.61□□□□□ -0.55
CCDC88A-204ENST00000413716 SPSB4Q96A44 273 aa11.61□□□□□ -0.55
CCDC88A-204ENST00000413716 IGKV6-21A0A0C4DH24 114 aa11.61□□□□□ -0.55
CCDC88A-204ENST00000413716 SPEM2Q0P670 501 aa11.61□□□□□ -0.55
CCDC88A-204ENST00000413716 SHISA8B8ZZ34 492 aa11.61□□□□□ -0.55
CCDC88A-204ENST00000413716 PIGYQ3MUY2 71 aa11.61□□□□□ -0.55
CCDC88A-204ENST00000413716 TP53I13Q8NBR0 393 aaPredicted RBP11.61□□□□□ -0.55
CCDC88A-204ENST00000413716 IGHV3OR15-7A0A075B7D8 119 aa11.6□□□□□ -0.55
CCDC88A-204ENST00000413716 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.6□□□□□ -0.55
CCDC88A-204ENST00000413716 ATP5G2Q06055 141 aa11.6□□□□□ -0.55
CCDC88A-204ENST00000413716 XAF1Q6GPH4 301 aa11.6□□□□□ -0.55
CCDC88A-204ENST00000413716 MRPL24Q96A35 216 aaKnown RBP11.6□□□□□ -0.55
CCDC88A-204ENST00000413716 LINC00614P0C842 121 aa11.6□□□□□ -0.55
CCDC88A-204ENST00000413716 ZNF250P15622 560 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms