RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 MIC13Q5XKP0 118 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 VASH2Q86V25 355 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 FOXB1Q99853 325 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 TM2D1Q9BX74 207 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 IGHV3-43A0A0B4J1X8 118 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 OR4C46A6NHA9 309 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 CEACAM18A8MTB9 384 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 NDUFS8O00217 210 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 SPINT2O43291 252 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 CXCL13O43927 109 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 FCGR3BO75015 233 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 CA2P00918 260 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 IGHV3-43DP0DP04 118 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 UCP1P25874 307 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 TSPOP30536 169 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 TFF3Q07654 80 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 SMAGPQ0VAQ4 97 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 PRSS3P2Q8NHM4 247 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 RNF166Q96A37 237 aaPredicted RBP7.97□□□□□ -1.13
COL28A1-201ENST00000399429 GNB4Q9HAV0 340 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 IL36BQ9NZH7 164 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 ZNF581Q9P0T4 197 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 CDC42EP3Q9UKI2 254 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 PXMP4Q9Y6I8 212 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 CEP250Q9BV73 2442 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 TRAV1-1A0A0B4J248 108 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 IGKV1D-13A0A0B4J2D9 117 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 ZG16O60844 167 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 IL6RP08887 468 aaPredicted RBP7.97□□□□□ -1.13
COL28A1-201ENST00000399429 IGKV1-13P0DP09 117 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 HTR1DP28221 377 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 GPR12P47775 334 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 SUMO3P55854 103 aaPredicted RBP7.97□□□□□ -1.13
COL28A1-201ENST00000399429 KIAA0895LQ68EN5 471 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 MRPL52Q86TS9 123 aaKnown RBP7.97□□□□□ -1.13
COL28A1-201ENST00000399429 LRTM2Q8N967 370 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 KCNS1Q96KK3 526 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 UCN2Q96RP3 112 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 NAA38Q9BRA0 125 aaKnown RBP7.97□□□□□ -1.13
COL28A1-201ENST00000399429 MRPS18CQ9Y3D5 142 aaKnown RBP7.97□□□□□ -1.13
COL28A1-201ENST00000399429 GAGE12BA1L429 117 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 HYPMO75409 117 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 CDKN1BP46527 198 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 FOXA3P55318 350 aaPredicted RBP7.97□□□□□ -1.13
COL28A1-201ENST00000399429 ZP4Q12836 540 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 MOB1BQ7L9L4 216 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 C10orf35Q96D05 121 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 WDR54Q9H977 334 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 SAP30LQ9HAJ7 183 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 HS3ST3A1Q9Y663 406 aa7.97□□□□□ -1.13
COL28A1-201ENST00000399429 ZIC3O60481 467 aa7.96□□□□□ -1.13
COL28A1-201ENST00000399429 ZNF324O75467 553 aaPredicted RBP7.96□□□□□ -1.13
COL28A1-201ENST00000399429 CRYBB3P26998 211 aa7.96□□□□□ -1.13
COL28A1-201ENST00000399429 GDF1P27539 372 aa7.96□□□□□ -1.13
COL28A1-201ENST00000399429 PET117Q6UWS5 81 aa7.96□□□□□ -1.13
COL28A1-201ENST00000399429 LINC01551Q86U37 167 aa7.96□□□□□ -1.13
COL28A1-201ENST00000399429 ABHD3Q8WU67 409 aa7.96□□□□□ -1.13
COL28A1-201ENST00000399429 CD207Q9UJ71 328 aa7.96□□□□□ -1.13
COL28A1-201ENST00000399429 R4GN57 208 aa7.96□□□□□ -1.13
COL28A1-201ENST00000399429 ARHGAP21Q5T5U3 1957 aa7.96□□□□□ -1.13
COL28A1-201ENST00000399429 HELZP42694 1942 aaKnown RBP7.96□□□□□ -1.14
COL28A1-201ENST00000399429 TRAV30A0A087WSZ9 112 aa7.96□□□□□ -1.14
COL28A1-201ENST00000399429 KIR2DL5BA0A0G2JN68 375 aa7.96□□□□□ -1.14
COL28A1-201ENST00000399429 KIR2DL5BA0A0G2JPC4 375 aa7.96□□□□□ -1.14
COL28A1-201ENST00000399429 HIST1H1EP10412 219 aaKnown RBP7.96□□□□□ -1.14
COL28A1-201ENST00000399429 CFPP27918 469 aa7.96□□□□□ -1.14
COL28A1-201ENST00000399429 KIR2DL5AQ8N109 375 aa7.96□□□□□ -1.14
COL28A1-201ENST00000399429 OCC1Q8TAD7 63 aa7.96□□□□□ -1.14
COL28A1-201ENST00000399429 MRGPRDQ8TDS7 321 aa7.96□□□□□ -1.14
COL28A1-201ENST00000399429 ZNF721Q8TF20 911 aa7.96□□□□□ -1.14
COL28A1-201ENST00000399429 SH2D2AQ9NP31 389 aa7.96□□□□□ -1.14
COL28A1-201ENST00000399429 PSG11Q9UQ72 335 aa7.96□□□□□ -1.14
COL28A1-201ENST00000399429 TMEM56-RWDD3S4R434 201 aa7.96□□□□□ -1.14
COL28A1-201ENST00000399429 NGFP01138 241 aa7.96□□□□□ -1.14
COL28A1-201ENST00000399429 C3orf79P0CE67 100 aa7.96□□□□□ -1.14
COL28A1-201ENST00000399429 OR8A1Q8NGG7 326 aa7.96□□□□□ -1.14
COL28A1-201ENST00000399429 SPPL3Q8TCT6 385 aa7.96□□□□□ -1.14
COL28A1-201ENST00000399429 MRGPRX1Q96LB2 322 aa7.96□□□□□ -1.14
COL28A1-201ENST00000399429 PMCHL2Q9BQD1 86 aa7.96□□□□□ -1.14
COL28A1-201ENST00000399429 TMEM70Q9BUB7 260 aa7.96□□□□□ -1.14
COL28A1-201ENST00000399429 MTCL1Q9Y4B5 1905 aaKnown RBP7.95□□□□□ -1.14
COL28A1-201ENST00000399429 TRAV9-2A0A087WT02 112 aa7.95□□□□□ -1.14
COL28A1-201ENST00000399429 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.95□□□□□ -1.14
COL28A1-201ENST00000399429 ZNF891A8MT65 544 aaPredicted RBP7.95□□□□□ -1.14
COL28A1-201ENST00000399429 SCRG1O75711 98 aa7.95□□□□□ -1.14
COL28A1-201ENST00000399429 MYO7BQ6PIF6 2116 aa7.95□□□□□ -1.14
COL28A1-201ENST00000399429 KMT5CQ86Y97 462 aa7.95□□□□□ -1.14
COL28A1-201ENST00000399429 FAM131CQ96AQ9 280 aa7.95□□□□□ -1.14
COL28A1-201ENST00000399429 ATP23Q9Y6H3 246 aa7.95□□□□□ -1.14
COL28A1-201ENST00000399429 NUPR1O60356 82 aa7.95□□□□□ -1.14
COL28A1-201ENST00000399429 TMEM50AO95807 157 aa7.95□□□□□ -1.14
COL28A1-201ENST00000399429 LINC00869P0C866 280 aa7.95□□□□□ -1.14
COL28A1-201ENST00000399429 EPHA8P29322 1005 aaPredicted RBP7.95□□□□□ -1.14
COL28A1-201ENST00000399429 RTL10Q7L3V2 364 aa7.95□□□□□ -1.14
COL28A1-201ENST00000399429 NPCDR1Q9BY65 106 aa7.95□□□□□ -1.14
COL28A1-201ENST00000399429 ELOVL5Q9NYP7 299 aa7.95□□□□□ -1.14
COL28A1-201ENST00000399429 FBXL7Q9UJT9 491 aa7.95□□□□□ -1.14
COL28A1-201ENST00000399429 H3BUT2 72 aa7.95□□□□□ -1.14
COL28A1-201ENST00000399429 FABP2P12104 132 aa7.95□□□□□ -1.14
COL28A1-201ENST00000399429 GPR6P46095 362 aaPredicted RBP7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms