RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 PIGBOS1A0A0B4J2F0 54 aa5.58□□□□□ -1.52
LIMA1-202ENST00000394943 LINC00473A8K010 186 aa5.58□□□□□ -1.52
LIMA1-202ENST00000394943 CHST1O43916 411 aa5.58□□□□□ -1.52
LIMA1-202ENST00000394943 IGHG2P01859 326 aa5.58□□□□□ -1.52
LIMA1-202ENST00000394943 BRS3P32247 399 aa5.58□□□□□ -1.52
LIMA1-202ENST00000394943 SLC25A42Q86VD7 318 aa5.58□□□□□ -1.52
LIMA1-202ENST00000394943 OR2T10Q8NGZ9 312 aa5.58□□□□□ -1.52
LIMA1-202ENST00000394943 TOMM40LQ969M1 308 aa5.58□□□□□ -1.52
LIMA1-202ENST00000394943 S1PR3Q99500 378 aa5.58□□□□□ -1.52
LIMA1-202ENST00000394943 MRPL20Q9BYC9 149 aaKnown RBP5.58□□□□□ -1.52
LIMA1-202ENST00000394943 C5orf66Q9H5L9 145 aa5.58□□□□□ -1.52
LIMA1-202ENST00000394943 COPZ2Q9P299 210 aa5.58□□□□□ -1.52
LIMA1-202ENST00000394943 WASHC3Q9Y3C0 194 aa5.58□□□□□ -1.52
LIMA1-202ENST00000394943 SOX21Q9Y651 276 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-202ENST00000394943 MED13LQ71F56 2210 aa5.58□□□□□ -1.52
LIMA1-202ENST00000394943 RAB3DO95716 219 aa5.58□□□□□ -1.52
LIMA1-202ENST00000394943 RPL30P62888 115 aaKnown RBP5.58□□□□□ -1.52
LIMA1-202ENST00000394943 ZNF782Q6ZMW2 699 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-202ENST00000394943 TMEM17Q86X19 198 aa5.58□□□□□ -1.52
LIMA1-202ENST00000394943 SNX29P2Q8IUI4 249 aa5.58□□□□□ -1.52
LIMA1-202ENST00000394943 FOXRED2Q8IWF2 684 aa5.58□□□□□ -1.52
LIMA1-202ENST00000394943 RFESDQ8TAC1 157 aa5.58□□□□□ -1.52
LIMA1-202ENST00000394943 ZNF418Q8TF45 676 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-202ENST00000394943 ZNF2Q9BSG1 426 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-202ENST00000394943 C1RLQ9NZP8 487 aa5.58□□□□□ -1.52
LIMA1-202ENST00000394943 GNG12Q9UBI6 72 aa5.58□□□□□ -1.52
LIMA1-202ENST00000394943 POLQO75417 2590 aa5.58□□□□□ -1.52
LIMA1-202ENST00000394943 DBX1A6NMT0 343 aa5.58□□□□□ -1.52
LIMA1-202ENST00000394943 RNF212BA8MTL3 300 aa5.58□□□□□ -1.52
LIMA1-202ENST00000394943 TIMM23O14925 209 aa5.58□□□□□ -1.52
LIMA1-202ENST00000394943 IFNA2P01563 188 aa5.58□□□□□ -1.52
LIMA1-202ENST00000394943 HLA-GP17693 338 aa5.58□□□□□ -1.52
LIMA1-202ENST00000394943 FAUP35544 74 aaKnown RBP5.58□□□□□ -1.52
LIMA1-202ENST00000394943 DLX1P56177 255 aa5.58□□□□□ -1.52
LIMA1-202ENST00000394943 SRSF4Q08170 494 aaKnown RBP5.58□□□□□ -1.52
LIMA1-202ENST00000394943 RNASE10Q5GAN6 216 aaKnown RBP5.58□□□□□ -1.52
LIMA1-202ENST00000394943 THOC7Q6I9Y2 204 aaKnown RBP5.58□□□□□ -1.52
LIMA1-202ENST00000394943 C16orf87Q6PH81 154 aa5.58□□□□□ -1.52
LIMA1-202ENST00000394943 OR6F1Q8NGZ6 308 aa5.58□□□□□ -1.52
LIMA1-202ENST00000394943 EAF1Q96JC9 268 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-202ENST00000394943 TMEM68Q96MH6 324 aa5.58□□□□□ -1.52
LIMA1-202ENST00000394943 SCGB3A2Q96PL1 93 aa5.58□□□□□ -1.52
LIMA1-202ENST00000394943 COA4Q9NYJ1 87 aa5.58□□□□□ -1.52
LIMA1-202ENST00000394943 EHFQ9NZC4 300 aa5.58□□□□□ -1.52
LIMA1-202ENST00000394943 MOB4Q9Y3A3 225 aa5.58□□□□□ -1.52
LIMA1-202ENST00000394943 ZANQ9Y493 2812 aa5.57□□□□□ -1.52
LIMA1-202ENST00000394943 ARHGAP32A7KAX9 2087 aa5.57□□□□□ -1.52
LIMA1-202ENST00000394943 TRIM77I1YAP6 450 aa5.57□□□□□ -1.52
LIMA1-202ENST00000394943 PMP2P02689 132 aa5.57□□□□□ -1.52
LIMA1-202ENST00000394943 FAM106CPP0CH98 169 aa5.57□□□□□ -1.52
LIMA1-202ENST00000394943 VSIG10L2P0DP72 767 aa5.57□□□□□ -1.52
LIMA1-202ENST00000394943 EGR2P11161 476 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-202ENST00000394943 SUPT4H1P63272 117 aaKnown RBP5.57□□□□□ -1.52
LIMA1-202ENST00000394943 TMEM167AQ8TBQ9 72 aa5.57□□□□□ -1.52
LIMA1-202ENST00000394943 MAFIPQ8WZ33 124 aa5.57□□□□□ -1.52
LIMA1-202ENST00000394943 AIFM2Q9BRQ8 373 aa5.57□□□□□ -1.52
LIMA1-202ENST00000394943 OR2D2Q9H210 308 aa5.57□□□□□ -1.52
LIMA1-202ENST00000394943 VSIG4Q9Y279 399 aa5.57□□□□□ -1.52
LIMA1-202ENST00000394943 MYO9AB2RTY4 2548 aa5.57□□□□□ -1.52
LIMA1-202ENST00000394943 IGHV3-43A0A0B4J1X8 118 aa5.57□□□□□ -1.52
LIMA1-202ENST00000394943 RGS5O15539 181 aa5.57□□□□□ -1.52
LIMA1-202ENST00000394943 CDS2O95674 445 aa5.57□□□□□ -1.52
LIMA1-202ENST00000394943 IL5P05113 134 aa5.57□□□□□ -1.52
LIMA1-202ENST00000394943 IGHV3-43DP0DP04 118 aa5.57□□□□□ -1.52
LIMA1-202ENST00000394943 F2RP25116 425 aa5.57□□□□□ -1.52
LIMA1-202ENST00000394943 GPR12P47775 334 aa5.57□□□□□ -1.52
LIMA1-202ENST00000394943 BRD3OSQ6XYD6 125 aa5.57□□□□□ -1.52
LIMA1-202ENST00000394943 MINDY2Q8NBR6 621 aa5.57□□□□□ -1.52
LIMA1-202ENST00000394943 OR4C13Q8NGP0 309 aa5.57□□□□□ -1.52
LIMA1-202ENST00000394943 OR10X1Q8NGY0 326 aa5.57□□□□□ -1.52
LIMA1-202ENST00000394943 LSM10Q969L4 123 aaKnown RBP5.57□□□□□ -1.52
LIMA1-202ENST00000394943 ATP6V0BQ99437 205 aa5.57□□□□□ -1.52
LIMA1-202ENST00000394943 SSX3Q99909 188 aa5.57□□□□□ -1.52
LIMA1-202ENST00000394943 AKAP6Q13023 2319 aa5.57□□□□□ -1.52
LIMA1-202ENST00000394943 MXRA5Q9NR99 2828 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 CCDC160A6NGH7 325 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 H3BUA1 57 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 HOXA3O43365 443 aaPredicted RBP5.56□□□□□ -1.52
LIMA1-202ENST00000394943 HPRT1P00492 218 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 IGKV1-39P01597 117 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 IGKV1D-39P04432 117 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 RBMS2Q15434 407 aaKnown RBP5.56□□□□□ -1.52
LIMA1-202ENST00000394943 RPL39P5Q59GN2 51 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 LEAP2Q969E1 77 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 RPEQ96AT9 228 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 ROS1P08922 2347 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 TEX13DA0A0J9YY54 714 aaPredicted RBP5.56□□□□□ -1.52
LIMA1-202ENST00000394943 GPR137BO60478 399 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 IGHV4-59P01825 116 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 SNRNP70P08621 437 aaKnown RBP5.56□□□□□ -1.52
LIMA1-202ENST00000394943 COX7A1P24310 79 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 OR3A3P47888 321 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 BAMBIQ13145 260 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 TMEM187Q14656 261 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 BSXQ3C1V8 233 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 PYDC2Q56P42 97 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 FAM219AQ8IW50 185 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 TOMM5Q8N4H5 51 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 ZNF114Q8NC26 417 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 OR52E5Q8NH55 327 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms