RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 IGKV3D-11A0A0A0MRZ8 115 aa11.74□□□□□ -0.53
USP49-203ENST00000394253 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.74□□□□□ -0.53
USP49-203ENST00000394253 NKX2-6A6NCS4 301 aa11.74□□□□□ -0.53
USP49-203ENST00000394253 IGKV3-11P04433 115 aa11.74□□□□□ -0.53
USP49-203ENST00000394253 GPX1P07203 203 aa11.74□□□□□ -0.53
USP49-203ENST00000394253 CAPZBP47756 277 aa11.74□□□□□ -0.53
USP49-203ENST00000394253 ZNF774Q6NX45 483 aa11.74□□□□□ -0.53
USP49-203ENST00000394253 TMEM131Q92545 1883 aa11.74□□□□□ -0.53
USP49-203ENST00000394253 IGHV3-20A0A0C4DH32 117 aa11.73□□□□□ -0.53
USP49-203ENST00000394253 C14orf144Q96I85 54 aa11.73□□□□□ -0.53
USP49-203ENST00000394253 H0Y980 276 aa11.73□□□□□ -0.53
USP49-203ENST00000394253 EML2O95834 649 aa11.73□□□□□ -0.53
USP49-203ENST00000394253 LOXL3P58215 753 aa11.73□□□□□ -0.53
USP49-203ENST00000394253 MBD1Q9UIS9 605 aaPredicted RBP11.73□□□□□ -0.53
USP49-203ENST00000394253 CLLU1OSQ5K130 101 aa11.73□□□□□ -0.53
USP49-203ENST00000394253 FAM74A4Q5TZK3 123 aa11.73□□□□□ -0.53
USP49-203ENST00000394253 TMEM86BQ8N661 226 aa11.73□□□□□ -0.53
USP49-203ENST00000394253 MRAPQ8TCY5 172 aa11.73□□□□□ -0.53
USP49-203ENST00000394253 OR2H1Q9GZK4 316 aa11.73□□□□□ -0.53
USP49-203ENST00000394253 GSN-AS1Q9NRJ2 163 aa11.73□□□□□ -0.53
USP49-203ENST00000394253 MYOGP15173 224 aa11.73□□□□□ -0.53
USP49-203ENST00000394253 NUTF2P61970 127 aaKnown RBP11.73□□□□□ -0.53
USP49-203ENST00000394253 RALGAPA2Q2PPJ7 1873 aa11.73□□□□□ -0.53
USP49-203ENST00000394253 CA7P43166 264 aa11.73□□□□□ -0.53
USP49-203ENST00000394253 CFAP161Q6P656 301 aa11.73□□□□□ -0.53
USP49-203ENST00000394253 KIRREL2Q6UWL6 708 aa11.73□□□□□ -0.53
USP49-203ENST00000394253 TNFRSF18Q9Y5U5 241 aa11.73□□□□□ -0.53
USP49-203ENST00000394253 HIST1H4AP62805 103 aaKnown RBP11.73□□□□□ -0.53
USP49-203ENST00000394253 SOSTQ9BQB4 213 aa11.73□□□□□ -0.53
USP49-203ENST00000394253 LOC285556D6RIA3 1793 aa11.73□□□□□ -0.53
USP49-203ENST00000394253 RPS11P62280 158 aaKnown RBP eCLIP11.73□□□□□ -0.53
USP49-203ENST00000394253 FAM159AQ6UWV7 190 aa11.73□□□□□ -0.53
USP49-203ENST00000394253 HPRT1P00492 218 aa11.72□□□□□ -0.53
USP49-203ENST00000394253 F12P00748 615 aaPredicted RBP11.72□□□□□ -0.53
USP49-203ENST00000394253 PSG2P11465 335 aa11.72□□□□□ -0.53
USP49-203ENST00000394253 RSPO3Q9BXY4 272 aaPredicted RBP11.72□□□□□ -0.53
USP49-203ENST00000394253 MRPL20Q9BYC9 149 aaKnown RBP11.72□□□□□ -0.53
USP49-203ENST00000394253 Q6AWC8 147 aa11.72□□□□□ -0.53
USP49-203ENST00000394253 PGLYRP3Q96LB9 341 aa11.72□□□□□ -0.53
USP49-203ENST00000394253 FRRS1LQ9P0K9 344 aa11.72□□□□□ -0.53
USP49-203ENST00000394253 SEC11AP67812 179 aa11.72□□□□□ -0.53
USP49-203ENST00000394253 BADQ92934 168 aa11.72□□□□□ -0.53
USP49-203ENST00000394253 PRDM14Q9GZV8 571 aa11.72□□□□□ -0.53
USP49-203ENST00000394253 SLC6A13Q9NSD5 602 aa11.72□□□□□ -0.53
USP49-203ENST00000394253 BTAF1O14981 1849 aa11.72□□□□□ -0.53
USP49-203ENST00000394253 IGKV3D-15A0A087WSY6 115 aa11.72□□□□□ -0.53
USP49-203ENST00000394253 IGKV3-15P01624 115 aa11.72□□□□□ -0.53
USP49-203ENST00000394253 LCN2P80188 198 aa11.72□□□□□ -0.53
USP49-203ENST00000394253 PLSCR4Q9NRQ2 329 aa11.72□□□□□ -0.53
USP49-203ENST00000394253 VENTXO95231 258 aa11.72□□□□□ -0.53
USP49-203ENST00000394253 AGERQ15109 404 aa11.72□□□□□ -0.53
USP49-203ENST00000394253 ZNF124Q15973 351 aa11.72□□□□□ -0.53
USP49-203ENST00000394253 FZR1Q9UM11 496 aa11.72□□□□□ -0.53
USP49-203ENST00000394253 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.72□□□□□ -0.53
USP49-203ENST00000394253 OR52M1Q8NGK5 317 aa11.72□□□□□ -0.53
USP49-203ENST00000394253 TRAV30A0A087WSZ9 112 aa11.72□□□□□ -0.53
USP49-203ENST00000394253 SPEM2Q0P670 501 aa11.72□□□□□ -0.53
USP49-203ENST00000394253 ZNF585BQ52M93 769 aa11.72□□□□□ -0.53
USP49-203ENST00000394253 FAM78AQ5JUQ0 283 aa11.72□□□□□ -0.53
USP49-203ENST00000394253 OLIG3Q7RTU3 272 aa11.72□□□□□ -0.53
USP49-203ENST00000394253 C6orf106Q9H6K1 298 aaPredicted RBP11.72□□□□□ -0.53
USP49-203ENST00000394253 ODAMA1E959 279 aa11.71□□□□□ -0.53
USP49-203ENST00000394253 MMDQ15546 238 aa11.71□□□□□ -0.53
USP49-203ENST00000394253 GUCA2BQ16661 112 aa11.71□□□□□ -0.53
USP49-203ENST00000394253 SNAI3Q3KNW1 292 aa11.71□□□□□ -0.53
USP49-203ENST00000394253 SCGB3A1Q96QR1 104 aa11.71□□□□□ -0.53
USP49-203ENST00000394253 IGKV3OR2-268A0A0C4DH90 116 aa11.71□□□□□ -0.53
USP49-203ENST00000394253 A0A1B0GTH9 108 aa11.71□□□□□ -0.53
USP49-203ENST00000394253 FFAR1O14842 300 aa11.71□□□□□ -0.53
USP49-203ENST00000394253 GGTLC2Q14390 218 aa11.71□□□□□ -0.53
USP49-203ENST00000394253 FBXO46Q6PJ61 603 aaPredicted RBP11.71□□□□□ -0.53
USP49-203ENST00000394253 OR4D11Q8NGI4 311 aa11.71□□□□□ -0.53
USP49-203ENST00000394253 TMEM106BQ9NUM4 274 aa11.71□□□□□ -0.53
USP49-203ENST00000394253 TMEM52BQ4KMG9 183 aa11.71□□□□□ -0.54
USP49-203ENST00000394253 DMRTC1Q5HYR2 192 aa11.71□□□□□ -0.54
USP49-203ENST00000394253 TP53I13Q8NBR0 393 aaPredicted RBP11.71□□□□□ -0.54
USP49-203ENST00000394253 RLN3Q8WXF3 142 aa11.71□□□□□ -0.54
USP49-203ENST00000394253 MRPL32Q9BYC8 188 aaKnown RBP11.71□□□□□ -0.54
USP49-203ENST00000394253 ALX4Q9H161 411 aaPredicted RBP11.71□□□□□ -0.54
USP49-203ENST00000394253 SBF2Q86WG5 1849 aa11.71□□□□□ -0.54
USP49-203ENST00000394253 ALS2Q96Q42 1657 aa11.71□□□□□ -0.54
USP49-203ENST00000394253 TRAV9-1A0A075B6T8 112 aa11.71□□□□□ -0.54
USP49-203ENST00000394253 ASAH2BP0C7U1 165 aa11.71□□□□□ -0.54
USP49-203ENST00000394253 SLURP2P0DP57 97 aa11.71□□□□□ -0.54
USP49-203ENST00000394253 WNT10AQ9GZT5 417 aa11.71□□□□□ -0.54
USP49-203ENST00000394253 CEACAM4O75871 244 aa11.71□□□□□ -0.54
USP49-203ENST00000394253 NAPSAO96009 420 aa11.71□□□□□ -0.54
USP49-203ENST00000394253 FAM106CPP0CH98 169 aa11.71□□□□□ -0.54
USP49-203ENST00000394253 RCC1P18754 421 aaPredicted RBP11.71□□□□□ -0.54
USP49-203ENST00000394253 FOXF1Q12946 379 aa11.71□□□□□ -0.54
USP49-203ENST00000394253 SMAD4Q13485 552 aaKnown RBP11.71□□□□□ -0.54
USP49-203ENST00000394253 WFDC3Q8IUB2 231 aa11.71□□□□□ -0.54
USP49-203ENST00000394253 LSM6P62312 80 aaKnown RBP11.7□□□□□ -0.54
USP49-203ENST00000394253 LYZL2Q7Z4W2 148 aa11.7□□□□□ -0.54
USP49-203ENST00000394253 SRSF12Q8WXF0 261 aaKnown RBP11.7□□□□□ -0.54
USP49-203ENST00000394253 COL2A1P02458 1487 aaPredicted RBP11.7□□□□□ -0.54
USP49-203ENST00000394253 GPR183P32249 361 aa11.7□□□□□ -0.54
USP49-203ENST00000394253 ZNF48Q96MX3 618 aaPredicted RBP11.7□□□□□ -0.54
USP49-203ENST00000394253 FNDC4Q9H6D8 234 aaPredicted RBP11.7□□□□□ -0.54
USP49-203ENST00000394253 APELAP0DMC3 54 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms