RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 OR4D5Q8NGN0 318 aa10.36□□□□□ -0.75
CIITA-202ENST00000381835 OR2G3Q8NGZ4 309 aa10.36□□□□□ -0.75
CIITA-202ENST00000381835 MOB3AQ96BX8 217 aa10.36□□□□□ -0.75
CIITA-202ENST00000381835 SMDT1Q9H4I9 107 aa10.36□□□□□ -0.75
CIITA-202ENST00000381835 METRNQ9UJH8 293 aa10.36□□□□□ -0.75
CIITA-202ENST00000381835 TANC2Q9HCD6 1990 aa10.36□□□□□ -0.75
CIITA-202ENST00000381835 IGKV1D-17A0A075B6S4 117 aa10.35□□□□□ -0.75
CIITA-202ENST00000381835 RBFOX3A6NFN3 312 aa10.35□□□□□ -0.75
CIITA-202ENST00000381835 FAM24AA6NFZ4 105 aa10.35□□□□□ -0.75
CIITA-202ENST00000381835 PRDX2P32119 198 aa10.35□□□□□ -0.75
CIITA-202ENST00000381835 MAS1LP35410 378 aa10.35□□□□□ -0.75
CIITA-202ENST00000381835 RPS10P46783 165 aaKnown RBP10.35□□□□□ -0.75
CIITA-202ENST00000381835 COL10A1Q03692 680 aa10.35□□□□□ -0.75
CIITA-202ENST00000381835 ZNF266Q14584 549 aa10.35□□□□□ -0.75
CIITA-202ENST00000381835 HEPN1Q6WQI6 88 aa10.35□□□□□ -0.75
CIITA-202ENST00000381835 C1QL4Q86Z23 238 aa10.35□□□□□ -0.75
CIITA-202ENST00000381835 CD177Q8N6Q3 437 aa10.35□□□□□ -0.75
CIITA-202ENST00000381835 TP53RKQ96S44 253 aa10.35□□□□□ -0.75
CIITA-202ENST00000381835 IGHV1-69-2A0A0G2JMI3 117 aa10.35□□□□□ -0.75
CIITA-202ENST00000381835 C3orf85A0A1B0GTC6 90 aa10.35□□□□□ -0.75
CIITA-202ENST00000381835 AADACP22760 399 aa10.35□□□□□ -0.75
CIITA-202ENST00000381835 PPOXP50336 477 aa10.35□□□□□ -0.75
CIITA-202ENST00000381835 CEBPGP53567 150 aa10.35□□□□□ -0.75
CIITA-202ENST00000381835 UCP3P55916 312 aa10.35□□□□□ -0.75
CIITA-202ENST00000381835 CCL20P78556 96 aa10.35□□□□□ -0.75
CIITA-202ENST00000381835 KIAA0141Q14154 515 aaPredicted RBP10.35□□□□□ -0.75
CIITA-202ENST00000381835 Q6ZPA2 131 aa10.35□□□□□ -0.75
CIITA-202ENST00000381835 FAM90A1Q86YD7 464 aa10.35□□□□□ -0.75
CIITA-202ENST00000381835 TMEM106BQ9NUM4 274 aa10.35□□□□□ -0.75
CIITA-202ENST00000381835 RFNGQ9Y644 331 aa10.35□□□□□ -0.75
CIITA-202ENST00000381835 IFNL4K9M1U5 179 aa10.34□□□□□ -0.75
CIITA-202ENST00000381835 PPIHO43447 177 aaKnown RBP10.34□□□□□ -0.75
CIITA-202ENST00000381835 IGHV2-70P01814 119 aa10.34□□□□□ -0.75
CIITA-202ENST00000381835 OMGP23515 440 aa10.34□□□□□ -0.75
CIITA-202ENST00000381835 ATP6V0CP27449 155 aa10.34□□□□□ -0.75
CIITA-202ENST00000381835 RAB2AP61019 212 aa10.34□□□□□ -0.75
CIITA-202ENST00000381835 C11orf71Q6IPW1 123 aa10.34□□□□□ -0.75
CIITA-202ENST00000381835 C20orf204Q6ZNR8 217 aa10.34□□□□□ -0.75
CIITA-202ENST00000381835 PLPPR1Q8TBJ4 325 aa10.34□□□□□ -0.75
CIITA-202ENST00000381835 ABHD14AQ9BUJ0 271 aa10.34□□□□□ -0.75
CIITA-202ENST00000381835 UNKLQ9H9P5 680 aaKnown RBP10.34□□□□□ -0.75
CIITA-202ENST00000381835 LYNX1G3V0Z9 82 aa10.34□□□□□ -0.75
CIITA-202ENST00000381835 TMEM178BH3BS89 294 aa10.34□□□□□ -0.75
CIITA-202ENST00000381835 NAPSAO96009 420 aa10.34□□□□□ -0.75
CIITA-202ENST00000381835 LYNX1P0DP58 116 aa10.34□□□□□ -0.75
CIITA-202ENST00000381835 NKX2-1P43699 371 aaPredicted RBP10.34□□□□□ -0.75
CIITA-202ENST00000381835 DTX2Q86UW9 622 aa10.34□□□□□ -0.75
CIITA-202ENST00000381835 C1orf87Q8N0U7 546 aa10.34□□□□□ -0.75
CIITA-202ENST00000381835 EDARADDQ8WWZ3 215 aa10.34□□□□□ -0.75
CIITA-202ENST00000381835 YPEL4Q96NS1 127 aa10.34□□□□□ -0.75
CIITA-202ENST00000381835 TOLLIPQ9H0E2 274 aa10.34□□□□□ -0.75
CIITA-202ENST00000381835 RAB1BQ9H0U4 201 aa10.34□□□□□ -0.75
CIITA-202ENST00000381835 TRBV23-1A0A0A0MS06 115 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 TRAV39A0A0B4J263 110 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 IGSF23A1L1A6 192 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 OOEPA6NGQ2 149 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 ZNF727A8MUV8 499 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 H3BQ15 152 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 MPPED1O15442 326 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 LY6HO94772 140 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 YIF1AO95070 293 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 CDS2O95674 445 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 CLDN1O95832 211 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 PPYP01298 95 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 GYPAP02724 150 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 PLA2G2AP14555 144 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 TAGLN2P37802 199 aaKnown RBP10.33□□□□□ -0.76
CIITA-202ENST00000381835 VAMP2P63027 116 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 SRPXP78539 464 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 HAGHQ16775 308 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 C5orf24Q7Z6I8 188 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 ZNF695Q8IW36 515 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 ZNRF1Q8ND25 227 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 MRPL30Q8TCC3 161 aaKnown RBP10.33□□□□□ -0.76
CIITA-202ENST00000381835 GGACTQ9BVM4 153 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 PLEKHF2Q9H8W4 249 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 UBE2J1Q9Y385 318 aaPredicted RBP10.33□□□□□ -0.76
CIITA-202ENST00000381835 SPG11Q96JI7 2443 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 TACC2O95359 2948 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 TRDCB7Z8K6 153 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 HSPA12AO43301 675 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 SSSCA1O60232 199 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 PITX3O75364 302 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 CDKN1AP38936 164 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 MDH2P40926 338 aaKnown RBP10.33□□□□□ -0.76
CIITA-202ENST00000381835 OR3A1P47881 315 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 UBE2KP61086 200 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 RND3P61587 244 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 AESQ08117 197 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 RAB39BQ96DA2 213 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 SLC25A31Q9H0C2 315 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 RIMS4Q9H426 269 aaPredicted RBP10.33□□□□□ -0.76
CIITA-202ENST00000381835 Q9N2K0 584 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 MMP24Q9Y5R2 645 aa10.33□□□□□ -0.76
CIITA-202ENST00000381835 USP9YO00507 2555 aaPredicted RBP10.32□□□□□ -0.76
CIITA-202ENST00000381835 PPIAL4EA0A075B759 164 aa10.32□□□□□ -0.76
CIITA-202ENST00000381835 BTBD17A6NE02 478 aa10.32□□□□□ -0.76
CIITA-202ENST00000381835 PPIAL4DF5H284 164 aa10.32□□□□□ -0.76
CIITA-202ENST00000381835 PPIAL4FP0DN26 164 aa10.32□□□□□ -0.76
CIITA-202ENST00000381835 HOXA5P20719 270 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms