RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 LYZL2Q7Z4W2 148 aa11.97□□□□□ -0.49
HMGA1-203ENST00000374116 LRP11Q86VZ4 500 aa11.97□□□□□ -0.49
HMGA1-203ENST00000374116 FAM219AQ8IW50 185 aa11.97□□□□□ -0.49
HMGA1-203ENST00000374116 FAM58AQ8N1B3 248 aa11.97□□□□□ -0.49
HMGA1-203ENST00000374116 SUMF2Q8NBJ7 301 aa11.97□□□□□ -0.49
HMGA1-203ENST00000374116 OR11L1Q8NGX0 322 aa11.97□□□□□ -0.49
HMGA1-203ENST00000374116 NEK7Q8TDX7 302 aa11.97□□□□□ -0.49
HMGA1-203ENST00000374116 IL36RNQ9UBH0 155 aa11.97□□□□□ -0.49
HMGA1-203ENST00000374116 LSM5Q9Y4Y9 91 aaKnown RBP11.97□□□□□ -0.49
HMGA1-203ENST00000374116 DSCAMO60469 2012 aa11.96□□□□□ -0.49
HMGA1-203ENST00000374116 VPS13CQ709C8 3753 aa11.96□□□□□ -0.49
HMGA1-203ENST00000374116 C3orf85A0A1B0GTC6 90 aa11.96□□□□□ -0.49
HMGA1-203ENST00000374116 E5RGE8 158 aa11.96□□□□□ -0.49
HMGA1-203ENST00000374116 J3QT63 122 aa11.96□□□□□ -0.49
HMGA1-203ENST00000374116 PHF1O43189 567 aaPredicted RBP11.96□□□□□ -0.49
HMGA1-203ENST00000374116 CXCL1P09341 107 aa11.96□□□□□ -0.49
HMGA1-203ENST00000374116 CA6P23280 308 aa11.96□□□□□ -0.49
HMGA1-203ENST00000374116 GNRHRP30968 328 aa11.96□□□□□ -0.49
HMGA1-203ENST00000374116 TMEM33P57088 247 aa11.96□□□□□ -0.49
HMGA1-203ENST00000374116 TNFRSF9Q07011 255 aa11.96□□□□□ -0.49
HMGA1-203ENST00000374116 ALKBH6Q3KRA9 238 aa11.96□□□□□ -0.49
HMGA1-203ENST00000374116 PACRGQ96M98 296 aaPredicted RBP11.96□□□□□ -0.49
HMGA1-203ENST00000374116 RTL8AQ9BWD3 113 aa11.96□□□□□ -0.49
HMGA1-203ENST00000374116 OR2J1Q9GZK6 312 aa11.96□□□□□ -0.49
HMGA1-203ENST00000374116 SLC25A31Q9H0C2 315 aa11.96□□□□□ -0.49
HMGA1-203ENST00000374116 PRO1933Q9H354 126 aa11.96□□□□□ -0.49
HMGA1-203ENST00000374116 LAMP3Q9UQV4 416 aa11.96□□□□□ -0.49
HMGA1-203ENST00000374116 NSG2Q9Y328 171 aa11.96□□□□□ -0.49
HMGA1-203ENST00000374116 SMCO3A2RU48 225 aa11.95□□□□□ -0.5
HMGA1-203ENST00000374116 HS3ST1O14792 307 aa11.95□□□□□ -0.5
HMGA1-203ENST00000374116 MBPP02686 304 aaPredicted RBP11.95□□□□□ -0.5
HMGA1-203ENST00000374116 SCTP09683 121 aa11.95□□□□□ -0.5
HMGA1-203ENST00000374116 PPP1CBP62140 327 aa11.95□□□□□ -0.5
HMGA1-203ENST00000374116 ADIPOQQ15848 244 aa11.95□□□□□ -0.5
HMGA1-203ENST00000374116 MRPL52Q86TS9 123 aaKnown RBP11.95□□□□□ -0.5
HMGA1-203ENST00000374116 TMEM171Q8WVE6 324 aa11.95□□□□□ -0.5
HMGA1-203ENST00000374116 DUSP13Q9UII6 198 aa11.95□□□□□ -0.5
HMGA1-203ENST00000374116 RAI1Q7Z5J4 1906 aaPredicted RBP11.95□□□□□ -0.5
HMGA1-203ENST00000374116 MARCH11A6NNE9 402 aa11.95□□□□□ -0.5
HMGA1-203ENST00000374116 K7N7A8 449 aa11.95□□□□□ -0.5
HMGA1-203ENST00000374116 PHOX2AO14813 284 aa11.95□□□□□ -0.5
HMGA1-203ENST00000374116 TUSC2O75896 110 aa11.95□□□□□ -0.5
HMGA1-203ENST00000374116 SCGB1D2O95969 90 aa11.95□□□□□ -0.5
HMGA1-203ENST00000374116 RAC2P15153 192 aa11.95□□□□□ -0.5
HMGA1-203ENST00000374116 MPV17P39210 176 aa11.95□□□□□ -0.5
HMGA1-203ENST00000374116 GLIPR1P48060 266 aa11.95□□□□□ -0.5
HMGA1-203ENST00000374116 ZNF616Q08AN1 781 aa11.95□□□□□ -0.5
HMGA1-203ENST00000374116 Q8IYB0 196 aa11.95□□□□□ -0.5
HMGA1-203ENST00000374116 HSD17B11Q8NBQ5 300 aa11.95□□□□□ -0.5
HMGA1-203ENST00000374116 SLC25A40Q8TBP6 338 aa11.95□□□□□ -0.5
HMGA1-203ENST00000374116 MRPL30Q8TCC3 161 aaKnown RBP11.95□□□□□ -0.5
HMGA1-203ENST00000374116 RAB39BQ96DA2 213 aa11.95□□□□□ -0.5
HMGA1-203ENST00000374116 TP53RKQ96S44 253 aa11.95□□□□□ -0.5
HMGA1-203ENST00000374116 HIST1H2BLQ99880 126 aa11.95□□□□□ -0.5
HMGA1-203ENST00000374116 TMEM222Q9H0R3 208 aa11.95□□□□□ -0.5
HMGA1-203ENST00000374116 PITPNC1Q9UKF7 332 aa11.95□□□□□ -0.5
HMGA1-203ENST00000374116 MMP24Q9Y5R2 645 aa11.95□□□□□ -0.5
HMGA1-203ENST00000374116 LRP5LA4QPB2 252 aa11.94□□□□□ -0.5
HMGA1-203ENST00000374116 B4DEV8 164 aa11.94□□□□□ -0.5
HMGA1-203ENST00000374116 H3BQ15 152 aa11.94□□□□□ -0.5
HMGA1-203ENST00000374116 OR4A8P0C604 315 aa11.94□□□□□ -0.5
HMGA1-203ENST00000374116 RND2P52198 227 aa11.94□□□□□ -0.5
HMGA1-203ENST00000374116 GAGE1Q13065 139 aa11.94□□□□□ -0.5
HMGA1-203ENST00000374116 HERPUD1Q15011 391 aa11.94□□□□□ -0.5
HMGA1-203ENST00000374116 GPR157Q5UAW9 335 aa11.94□□□□□ -0.5
HMGA1-203ENST00000374116 ZNF880Q6PDB4 577 aa11.94□□□□□ -0.5
HMGA1-203ENST00000374116 ZCCHC24Q8N2G6 241 aaKnown RBP11.94□□□□□ -0.5
HMGA1-203ENST00000374116 ZNF488Q96MN9 340 aa11.94□□□□□ -0.5
HMGA1-203ENST00000374116 HIPK2Q9H2X6 1198 aa11.94□□□□□ -0.5
HMGA1-203ENST00000374116 USF3Q68DE3 2245 aa11.94□□□□□ -0.5
HMGA1-203ENST00000374116 TRAV24A0A0B4J272 114 aa11.93□□□□□ -0.5
HMGA1-203ENST00000374116 IQCF6A8MYZ5 107 aa11.93□□□□□ -0.5
HMGA1-203ENST00000374116 HSPB6O14558 160 aa11.93□□□□□ -0.5
HMGA1-203ENST00000374116 HSD17B6O14756 317 aa11.93□□□□□ -0.5
HMGA1-203ENST00000374116 DEGS1O15121 323 aa11.93□□□□□ -0.5
HMGA1-203ENST00000374116 ST8SIA3O43173 380 aa11.93□□□□□ -0.5
HMGA1-203ENST00000374116 CDS2O95674 445 aa11.93□□□□□ -0.5
HMGA1-203ENST00000374116 FABP4P15090 132 aa11.93□□□□□ -0.5
HMGA1-203ENST00000374116 SELEP16581 610 aa11.93□□□□□ -0.5
HMGA1-203ENST00000374116 COA6Q5JTJ3 125 aaKnown RBP11.93□□□□□ -0.5
HMGA1-203ENST00000374116 SPIN3Q5JUX0 258 aa11.93□□□□□ -0.5
HMGA1-203ENST00000374116 AKR1C8PQ5T2L2 129 aa11.93□□□□□ -0.5
HMGA1-203ENST00000374116 GFI1BQ5VTD9 330 aa11.93□□□□□ -0.5
HMGA1-203ENST00000374116 SLC35E3Q7Z769 313 aa11.93□□□□□ -0.5
HMGA1-203ENST00000374116 WDR86Q86TI4 376 aa11.93□□□□□ -0.5
HMGA1-203ENST00000374116 TBC1D26Q86UD7 250 aa11.93□□□□□ -0.5
HMGA1-203ENST00000374116 MUC15Q8N387 334 aa11.93□□□□□ -0.5
HMGA1-203ENST00000374116 NUP37Q8NFH4 326 aa11.93□□□□□ -0.5
HMGA1-203ENST00000374116 TMEM56Q96MV1 263 aa11.93□□□□□ -0.5
HMGA1-203ENST00000374116 TMEM242Q9NWH2 141 aa11.93□□□□□ -0.5
HMGA1-203ENST00000374116 POLDIP2Q9Y2S7 368 aa11.93□□□□□ -0.5
HMGA1-203ENST00000374116 UBE2J1Q9Y385 318 aaPredicted RBP11.93□□□□□ -0.5
HMGA1-203ENST00000374116 FBXO7Q9Y3I1 522 aa11.93□□□□□ -0.5
HMGA1-203ENST00000374116 PUS1Q9Y606 427 aaKnown RBP eCLIP11.93□□□□□ -0.5
HMGA1-203ENST00000374116 TMEM56-RWDD3S4R434 201 aa11.93□□□□□ -0.5
HMGA1-203ENST00000374116 DUXBA0A1W2PPF3 345 aa11.93□□□□□ -0.5
HMGA1-203ENST00000374116 GPR137BO60478 399 aa11.93□□□□□ -0.5
HMGA1-203ENST00000374116 RHBDL1O75783 438 aa11.93□□□□□ -0.5
HMGA1-203ENST00000374116 TRGC1P0CF51 173 aa11.93□□□□□ -0.5
HMGA1-203ENST00000374116 APOBEC3AP31941 199 aaPredicted RBP11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms