RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 LDLRAD1Q5T700 205 aa8.09□□□□□ -1.11
VPS13A-203ENST00000360280 TRAV30A0A087WSZ9 112 aa8.09□□□□□ -1.11
VPS13A-203ENST00000360280 RRHO14718 337 aa8.09□□□□□ -1.11
VPS13A-203ENST00000360280 KLK2P20151 261 aa8.09□□□□□ -1.11
VPS13A-203ENST00000360280 CTAG1AP78358 180 aa8.09□□□□□ -1.11
VPS13A-203ENST00000360280 ACER2Q5QJU3 275 aa8.09□□□□□ -1.11
VPS13A-203ENST00000360280 SBF2Q86WG5 1849 aa8.09□□□□□ -1.11
VPS13A-203ENST00000360280 C9orf172C9J069 976 aa8.09□□□□□ -1.11
VPS13A-203ENST00000360280 IGLV3-25P01717 112 aa8.09□□□□□ -1.11
VPS13A-203ENST00000360280 MS4A5Q9H3V2 200 aa8.09□□□□□ -1.11
VPS13A-203ENST00000360280 TRAV8-6A0A0B4J262 113 aa8.09□□□□□ -1.11
VPS13A-203ENST00000360280 FHITP49789 147 aa8.09□□□□□ -1.11
VPS13A-203ENST00000360280 TNFRSF12AQ9NP84 129 aa8.09□□□□□ -1.11
VPS13A-203ENST00000360280 HCSTQ9UBK5 93 aa8.09□□□□□ -1.11
VPS13A-203ENST00000360280 SDHCQ99643 169 aaPredicted RBP8.09□□□□□ -1.11
VPS13A-203ENST00000360280 TBL2Q9Y4P3 447 aaKnown RBP8.09□□□□□ -1.11
VPS13A-203ENST00000360280 A0A0U1RQV5 110 aa8.09□□□□□ -1.12
VPS13A-203ENST00000360280 J3QT63 122 aa8.09□□□□□ -1.12
VPS13A-203ENST00000360280 CNTFRP26992 372 aa8.09□□□□□ -1.12
VPS13A-203ENST00000360280 RPL34P49207 117 aaKnown RBP8.09□□□□□ -1.12
VPS13A-203ENST00000360280 RPS11P62280 158 aaKnown RBP eCLIP8.09□□□□□ -1.12
VPS13A-203ENST00000360280 SMAD4Q13485 552 aaKnown RBP8.09□□□□□ -1.12
VPS13A-203ENST00000360280 FAM74A4Q5TZK3 123 aa8.09□□□□□ -1.12
VPS13A-203ENST00000360280 A0A1B0GTH9 108 aa8.09□□□□□ -1.12
VPS13A-203ENST00000360280 CCL4L1Q8NHW4 92 aa8.09□□□□□ -1.12
VPS13A-203ENST00000360280 AKAP6Q13023 2319 aa8.08□□□□□ -1.12
VPS13A-203ENST00000360280 ISXQ2M1V0 245 aa8.08□□□□□ -1.12
VPS13A-203ENST00000360280 IGKV3D-11A0A0A0MRZ8 115 aa8.08□□□□□ -1.12
VPS13A-203ENST00000360280 IGKV3-11P04433 115 aa8.08□□□□□ -1.12
VPS13A-203ENST00000360280 NMBP08949 121 aa8.08□□□□□ -1.12
VPS13A-203ENST00000360280 SRSF4Q08170 494 aaKnown RBP8.08□□□□□ -1.12
VPS13A-203ENST00000360280 MGST2Q99735 147 aa8.08□□□□□ -1.12
VPS13A-203ENST00000360280 OR52M1Q8NGK5 317 aa8.08□□□□□ -1.12
VPS13A-203ENST00000360280 SIGMAR1Q99720 223 aa8.08□□□□□ -1.12
VPS13A-203ENST00000360280 A0A1B0GW15 77 aa8.08□□□□□ -1.12
VPS13A-203ENST00000360280 CDC42EP2O14613 210 aa8.08□□□□□ -1.12
VPS13A-203ENST00000360280 TMEM30AQ9NV96 361 aa8.08□□□□□ -1.12
VPS13A-203ENST00000360280 SPTY2D1-AS1A0A0U1RR47 76 aa8.08□□□□□ -1.12
VPS13A-203ENST00000360280 A0A1W2PQD3 144 aa8.08□□□□□ -1.12
VPS13A-203ENST00000360280 HOXA5P20719 270 aa8.08□□□□□ -1.12
VPS13A-203ENST00000360280 NPFFR1Q9GZQ6 430 aa8.08□□□□□ -1.12
VPS13A-203ENST00000360280 ELOVL5Q9NYP7 299 aa8.08□□□□□ -1.12
VPS13A-203ENST00000360280 APOMO95445 188 aa8.08□□□□□ -1.12
VPS13A-203ENST00000360280 VSTM2LQ96N03 204 aa8.08□□□□□ -1.12
VPS13A-203ENST00000360280 PLA2G3Q9NZ20 509 aa8.08□□□□□ -1.12
VPS13A-203ENST00000360280 TRPM3Q9HCF6 1732 aaPredicted RBP8.08□□□□□ -1.12
VPS13A-203ENST00000360280 LCN2P80188 198 aa8.08□□□□□ -1.12
VPS13A-203ENST00000360280 SRSF12Q8WXF0 261 aaKnown RBP8.08□□□□□ -1.12
VPS13A-203ENST00000360280 SH3BGRL3Q9H299 93 aa8.08□□□□□ -1.12
VPS13A-203ENST00000360280 ZNF430Q9H8G1 570 aaPredicted RBP8.08□□□□□ -1.12
VPS13A-203ENST00000360280 DNAJC4Q9NNZ3 241 aa8.08□□□□□ -1.12
VPS13A-203ENST00000360280 DOCK8Q8NF50 2099 aa8.08□□□□□ -1.12
VPS13A-203ENST00000360280 VENTXO95231 258 aa8.08□□□□□ -1.12
VPS13A-203ENST00000360280 CA7P43166 264 aa8.08□□□□□ -1.12
VPS13A-203ENST00000360280 INO80CQ6PI98 192 aaPredicted RBP8.08□□□□□ -1.12
VPS13A-203ENST00000360280 KLK13Q9UKR3 277 aa8.08□□□□□ -1.12
VPS13A-203ENST00000360280 NKX2-8O15522 239 aa8.08□□□□□ -1.12
VPS13A-203ENST00000360280 MMD2Q8IY49 270 aa8.08□□□□□ -1.12
VPS13A-203ENST00000360280 DMRTA2Q96SC8 542 aa8.08□□□□□ -1.12
VPS13A-203ENST00000360280 IGHV3-21A0A0B4J1V1 117 aa8.07□□□□□ -1.12
VPS13A-203ENST00000360280 NOVP48745 357 aa8.07□□□□□ -1.12
VPS13A-203ENST00000360280 SPEM1Q8N4L4 309 aa8.07□□□□□ -1.12
VPS13A-203ENST00000360280 OR5AN1Q8NGI8 311 aa8.07□□□□□ -1.12
VPS13A-203ENST00000360280 OR51G1Q8NGK1 321 aa8.07□□□□□ -1.12
VPS13A-203ENST00000360280 RPL27AP46776 148 aaKnown RBP8.07□□□□□ -1.12
VPS13A-203ENST00000360280 NUTF2P61970 127 aaKnown RBP8.07□□□□□ -1.12
VPS13A-203ENST00000360280 PRDM14Q9GZV8 571 aa8.07□□□□□ -1.12
VPS13A-203ENST00000360280 MYO7BQ6PIF6 2116 aa8.07□□□□□ -1.12
VPS13A-203ENST00000360280 MPTX1A8MV57 137 aa8.07□□□□□ -1.12
VPS13A-203ENST00000360280 RUNX1Q01196 453 aa8.07□□□□□ -1.12
VPS13A-203ENST00000360280 THSD4Q6ZMP0 1018 aa8.07□□□□□ -1.12
VPS13A-203ENST00000360280 C5orf30Q96GV9 206 aa8.07□□□□□ -1.12
VPS13A-203ENST00000360280 OPN3Q9H1Y3 402 aaPredicted RBP8.07□□□□□ -1.12
VPS13A-203ENST00000360280 LIPT2A6NK58 231 aa8.07□□□□□ -1.12
VPS13A-203ENST00000360280 Q6AWC8 147 aa8.07□□□□□ -1.12
VPS13A-203ENST00000360280 CYB5R2Q6BCY4 276 aa8.07□□□□□ -1.12
VPS13A-203ENST00000360280 TRBV23-1A0A0A0MS06 115 aa8.07□□□□□ -1.12
VPS13A-203ENST00000360280 PNLIPP16233 465 aa8.07□□□□□ -1.12
VPS13A-203ENST00000360280 OR2H1Q9GZK4 316 aa8.07□□□□□ -1.12
VPS13A-203ENST00000360280 BIVMQ86UB2 503 aa8.07□□□□□ -1.12
VPS13A-203ENST00000360280 CCL7P80098 99 aa8.07□□□□□ -1.12
VPS13A-203ENST00000360280 DLL1O00548 723 aa8.07□□□□□ -1.12
VPS13A-203ENST00000360280 SSTR5P35346 364 aa8.07□□□□□ -1.12
VPS13A-203ENST00000360280 ARRDC1-AS1Q9H2J1 176 aa8.07□□□□□ -1.12
VPS13A-203ENST00000360280 TRAV9-1A0A075B6T8 112 aa8.07□□□□□ -1.12
VPS13A-203ENST00000360280 TRPM7Q96QT4 1865 aa8.07□□□□□ -1.12
VPS13A-203ENST00000360280 SRSF6Q13247 344 aaKnown RBP8.07□□□□□ -1.12
VPS13A-203ENST00000360280 TAF15Q92804 592 aaKnown RBP eCLIP8.07□□□□□ -1.12
VPS13A-203ENST00000360280 MARCH11A6NNE9 402 aa8.07□□□□□ -1.12
VPS13A-203ENST00000360280 A0A1W2PRD5 423 aa8.06□□□□□ -1.12
VPS13A-203ENST00000360280 A0A1W2PRF3 423 aa8.06□□□□□ -1.12
VPS13A-203ENST00000360280 A0A1W2PRM7 423 aa8.06□□□□□ -1.12
VPS13A-203ENST00000360280 FXYD3Q14802 87 aa8.06□□□□□ -1.12
VPS13A-203ENST00000360280 SHISA5Q8N114 240 aa8.06□□□□□ -1.12
VPS13A-203ENST00000360280 MIXL1Q9H2W2 232 aa8.06□□□□□ -1.12
VPS13A-203ENST00000360280 SPANXA1Q9NS26 97 aa8.06□□□□□ -1.12
VPS13A-203ENST00000360280 GREB1Q4ZG55 1949 aa8.06□□□□□ -1.12
VPS13A-203ENST00000360280 GCSAMQ8N6F7 178 aa8.06□□□□□ -1.12
VPS13A-203ENST00000360280 TNFRSF18Q9Y5U5 241 aa8.06□□□□□ -1.12
VPS13A-203ENST00000360280 HEATR5AQ86XA9 2040 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms