RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 LINC00869P0C866 280 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 COL10A1Q03692 680 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 DEFB123Q8N688 67 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 SFRP2Q96HF1 295 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 RGPD3A6NKT7 1758 aaPredicted RBP16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 TRGV8A0A0C4DH27 118 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 PLAUP00749 431 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 GCSHP23434 173 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 CRYBB3P26998 211 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 UCP3P55916 312 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 EGR4Q05215 589 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 ARRDC1-AS1Q9H2J1 176 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 HEXA-AS1Q9H8Q6 139 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 MDC1Q14676 2089 aaKnown RBP16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 GOSR1O95249 250 aa16.8■□□□□ 0.28
CCDC88B-202ENST00000356786 TMEM108Q6UXF1 575 aa16.8■□□□□ 0.28
CCDC88B-202ENST00000356786 DNAJC4Q9NNZ3 241 aa16.8■□□□□ 0.28
CCDC88B-202ENST00000356786 ZIC3O60481 467 aa16.8■□□□□ 0.28
CCDC88B-202ENST00000356786 CEBPDP49716 269 aaPredicted RBP16.8■□□□□ 0.28
CCDC88B-202ENST00000356786 DLX1P56177 255 aa16.8■□□□□ 0.28
CCDC88B-202ENST00000356786 ST6GALNAC3Q8NDV1 305 aa16.8■□□□□ 0.28
CCDC88B-202ENST00000356786 DPRXA6NFQ7 191 aa16.8■□□□□ 0.28
CCDC88B-202ENST00000356786 LY6G6FQ5SQ64 297 aa16.8■□□□□ 0.28
CCDC88B-202ENST00000356786 PSMG3Q9BT73 122 aaPredicted RBP16.8■□□□□ 0.28
CCDC88B-202ENST00000356786 ESPL1Q14674 2120 aa16.8■□□□□ 0.28
CCDC88B-202ENST00000356786 HYPMO75409 117 aa16.8■□□□□ 0.28
CCDC88B-202ENST00000356786 TFF2Q03403 129 aa16.8■□□□□ 0.28
CCDC88B-202ENST00000356786 MDP1Q86V88 176 aa16.8■□□□□ 0.28
CCDC88B-202ENST00000356786 SPSB2Q99619 263 aa16.8■□□□□ 0.28
CCDC88B-202ENST00000356786 TCFL5Q9UL49 500 aa16.8■□□□□ 0.28
CCDC88B-202ENST00000356786 LOC285556D6RIA3 1793 aa16.8■□□□□ 0.28
CCDC88B-202ENST00000356786 AGFG2O95081 481 aa16.79■□□□□ 0.28
CCDC88B-202ENST00000356786 OR2H2O95918 312 aa16.79■□□□□ 0.28
CCDC88B-202ENST00000356786 AMY1AP04745 511 aa16.79■□□□□ 0.28
CCDC88B-202ENST00000356786 RTP5Q14D33 572 aa16.79■□□□□ 0.28
CCDC88B-202ENST00000356786 SPSB4Q96A44 273 aa16.79■□□□□ 0.28
CCDC88B-202ENST00000356786 TMEM210A6NLX4 147 aa16.79■□□□□ 0.28
CCDC88B-202ENST00000356786 SMIM10L1P0DMW3 83 aa16.79■□□□□ 0.28
CCDC88B-202ENST00000356786 CYP2G1PQ6ZSU1 146 aa16.79■□□□□ 0.28
CCDC88B-202ENST00000356786 SMIM10Q96HG1 83 aa16.79■□□□□ 0.28
CCDC88B-202ENST00000356786 A0A1W2PQF6 199 aa16.79■□□□□ 0.28
CCDC88B-202ENST00000356786 MKRN2OSH3BPM6 223 aa16.79■□□□□ 0.28
CCDC88B-202ENST00000356786 HLA-DRB1P01911 266 aa16.79■□□□□ 0.28
CCDC88B-202ENST00000356786 MAS1LP35410 378 aa16.79■□□□□ 0.28
CCDC88B-202ENST00000356786 IER2Q9BTL4 223 aa16.79■□□□□ 0.28
CCDC88B-202ENST00000356786 IFI6P09912 130 aa16.79■□□□□ 0.28
CCDC88B-202ENST00000356786 CLDN18P56856 261 aa16.79■□□□□ 0.28
CCDC88B-202ENST00000356786 NFAM1Q8NET5 270 aaPredicted RBP16.79■□□□□ 0.28
CCDC88B-202ENST00000356786 OR8G5Q8NG78 346 aa16.79■□□□□ 0.28
CCDC88B-202ENST00000356786 NDUFAF3Q9BU61 184 aa16.79■□□□□ 0.28
CCDC88B-202ENST00000356786 DLL3Q9NYJ7 618 aa16.79■□□□□ 0.28
CCDC88B-202ENST00000356786 NEUROG3Q9Y4Z2 214 aa16.79■□□□□ 0.28
CCDC88B-202ENST00000356786 A0A1B0GTI1 187 aa16.78■□□□□ 0.28
CCDC88B-202ENST00000356786 A0A1W2PRD5 423 aa16.78■□□□□ 0.28
CCDC88B-202ENST00000356786 A0A1W2PRF3 423 aa16.78■□□□□ 0.28
CCDC88B-202ENST00000356786 A0A1W2PRM7 423 aa16.78■□□□□ 0.28
CCDC88B-202ENST00000356786 PGPA6NDG6 321 aa16.78■□□□□ 0.28
CCDC88B-202ENST00000356786 REG1BP48304 166 aa16.78■□□□□ 0.28
CCDC88B-202ENST00000356786 LCN2P80188 198 aa16.78■□□□□ 0.28
CCDC88B-202ENST00000356786 RNF7Q9UBF6 113 aa16.78■□□□□ 0.28
CCDC88B-202ENST00000356786 IGHV3OR15-7A0A075B7D8 119 aa16.78■□□□□ 0.28
CCDC88B-202ENST00000356786 VENTXO95231 258 aa16.78■□□□□ 0.28
CCDC88B-202ENST00000356786 PRDX2P32119 198 aa16.78■□□□□ 0.28
CCDC88B-202ENST00000356786 NUBP1P53384 320 aa16.78■□□□□ 0.28
CCDC88B-202ENST00000356786 FBXW9Q5XUX1 488 aa16.78■□□□□ 0.28
CCDC88B-202ENST00000356786 RNF126Q9BV68 326 aa16.78■□□□□ 0.28
CCDC88B-202ENST00000356786 LOC101059948A0A1B0GTJ6 334 aa16.78■□□□□ 0.28
CCDC88B-202ENST00000356786 OR4A8P0C604 315 aa16.78■□□□□ 0.28
CCDC88B-202ENST00000356786 SSTR5P35346 364 aa16.78■□□□□ 0.28
CCDC88B-202ENST00000356786 ZNF841Q6ZN19 808 aa16.78■□□□□ 0.28
CCDC88B-202ENST00000356786 C1QL2Q7Z5L3 287 aa16.78■□□□□ 0.28
CCDC88B-202ENST00000356786 LOC107984156A0A0G2JMH3 177 aa16.78■□□□□ 0.28
CCDC88B-202ENST00000356786 CEACAM18A8MTB9 384 aa16.78■□□□□ 0.28
CCDC88B-202ENST00000356786 CEACAM3P40198 252 aa16.78■□□□□ 0.28
CCDC88B-202ENST00000356786 ARL17AQ8IVW1 177 aa16.78■□□□□ 0.28
CCDC88B-202ENST00000356786 C14orf144Q96I85 54 aa16.78■□□□□ 0.28
CCDC88B-202ENST00000356786 WNT10AQ9GZT5 417 aa16.78■□□□□ 0.28
CCDC88B-202ENST00000356786 A0A087WWC5 75 aa16.77■□□□□ 0.28
CCDC88B-202ENST00000356786 J3KRW8 73 aa16.77■□□□□ 0.28
CCDC88B-202ENST00000356786 DGAT2L7PQ6IED9 249 aa16.77■□□□□ 0.28
CCDC88B-202ENST00000356786 ZNF645Q8N7E2 425 aa16.77■□□□□ 0.28
CCDC88B-202ENST00000356786 DICER1Q9UPY3 1922 aaKnown RBP16.77■□□□□ 0.28
CCDC88B-202ENST00000356786 C17orf51A8MQB3 221 aa16.77■□□□□ 0.27
CCDC88B-202ENST00000356786 NPBWR2P48146 333 aa16.77■□□□□ 0.27
CCDC88B-202ENST00000356786 HOXA4Q00056 320 aaPredicted RBP16.77■□□□□ 0.27
CCDC88B-202ENST00000356786 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa16.77■□□□□ 0.27
CCDC88B-202ENST00000356786 RTBDNQ9BSG5 229 aaPredicted RBP16.77■□□□□ 0.27
CCDC88B-202ENST00000356786 AMMECR1Q9Y4X0 333 aaPredicted RBP16.77■□□□□ 0.27
CCDC88B-202ENST00000356786 INSIG2Q9Y5U4 225 aa16.77■□□□□ 0.27
CCDC88B-202ENST00000356786 BRCA1P38398 1863 aaKnown RBP16.77■□□□□ 0.27
CCDC88B-202ENST00000356786 TBX6O95947 436 aaPredicted RBP16.77■□□□□ 0.27
CCDC88B-202ENST00000356786 FGF5P12034 268 aa16.77■□□□□ 0.27
CCDC88B-202ENST00000356786 GALNT14Q96FL9 552 aa16.77■□□□□ 0.27
CCDC88B-202ENST00000356786 OR8B2Q96RD0 313 aa16.77■□□□□ 0.27
CCDC88B-202ENST00000356786 LSM10Q969L4 123 aaKnown RBP16.76■□□□□ 0.27
CCDC88B-202ENST00000356786 PGLYRP4Q96LB8 373 aa16.76■□□□□ 0.27
CCDC88B-202ENST00000356786 WDR90Q96KV7 1748 aa16.76■□□□□ 0.27
CCDC88B-202ENST00000356786 CRYABP02511 175 aaKnown RBP16.76■□□□□ 0.27
CCDC88B-202ENST00000356786 KIR2DL2P43627 348 aaPredicted RBP16.76■□□□□ 0.27
CCDC88B-202ENST00000356786 SELENOTP62341 195 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms