RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 TNXAQ16473 311 aa11.6□□□□□ -0.55
COL6A3-202ENST00000347401 WDR25Q64LD2 544 aaPredicted RBP11.6□□□□□ -0.55
COL6A3-202ENST00000347401 SPEM1Q8N4L4 309 aa11.6□□□□□ -0.55
COL6A3-202ENST00000347401 OBSL1O75147 1896 aa11.6□□□□□ -0.55
COL6A3-202ENST00000347401 CLDN14O95500 239 aa11.6□□□□□ -0.55
COL6A3-202ENST00000347401 FGF5P12034 268 aa11.6□□□□□ -0.55
COL6A3-202ENST00000347401 TSPOP30536 169 aa11.6□□□□□ -0.55
COL6A3-202ENST00000347401 LOXL2Q9Y4K0 774 aa11.6□□□□□ -0.55
COL6A3-202ENST00000347401 LOC389332A0A1B0GUA5 103 aa11.59□□□□□ -0.55
COL6A3-202ENST00000347401 SPRY3O43610 288 aa11.59□□□□□ -0.55
COL6A3-202ENST00000347401 FGF12P61328 243 aa11.59□□□□□ -0.55
COL6A3-202ENST00000347401 SMAD4Q13485 552 aaKnown RBP11.59□□□□□ -0.55
COL6A3-202ENST00000347401 TSPO2Q5TGU0 170 aa11.59□□□□□ -0.55
COL6A3-202ENST00000347401 COX14Q96I36 57 aa11.59□□□□□ -0.55
COL6A3-202ENST00000347401 TLNRD1Q9H1K6 362 aa11.59□□□□□ -0.55
COL6A3-202ENST00000347401 B4GALNT1Q00973 533 aa11.59□□□□□ -0.55
COL6A3-202ENST00000347401 INSL4Q14641 139 aa11.59□□□□□ -0.55
COL6A3-202ENST00000347401 OTPQ5XKR4 325 aa11.59□□□□□ -0.55
COL6A3-202ENST00000347401 SHANK3Q9BYB0 1731 aa11.59□□□□□ -0.55
COL6A3-202ENST00000347401 RLN3Q8WXF3 142 aa11.59□□□□□ -0.55
COL6A3-202ENST00000347401 ABHD14AQ9BUJ0 271 aa11.59□□□□□ -0.55
COL6A3-202ENST00000347401 WDR54Q9H977 334 aa11.59□□□□□ -0.55
COL6A3-202ENST00000347401 KCNMB2Q9Y691 235 aa11.59□□□□□ -0.55
COL6A3-202ENST00000347401 IGHV3-15A0A0B4J1V0 119 aa11.59□□□□□ -0.55
COL6A3-202ENST00000347401 SOCS1O15524 211 aa11.59□□□□□ -0.55
COL6A3-202ENST00000347401 GCSAMQ8N6F7 178 aa11.59□□□□□ -0.55
COL6A3-202ENST00000347401 TRMT61AQ96FX7 289 aaKnown RBP11.59□□□□□ -0.55
COL6A3-202ENST00000347401 MUC4Q99102 2169 aa11.59□□□□□ -0.55
COL6A3-202ENST00000347401 SEC11AP67812 179 aa11.59□□□□□ -0.55
COL6A3-202ENST00000347401 ZNF658BQ4V348 819 aaPredicted RBP11.59□□□□□ -0.55
COL6A3-202ENST00000347401 SPATA46Q5T0L3 261 aa11.59□□□□□ -0.55
COL6A3-202ENST00000347401 KCNS1Q96KK3 526 aa11.59□□□□□ -0.55
COL6A3-202ENST00000347401 ZNF714Q96N38 554 aa11.59□□□□□ -0.55
COL6A3-202ENST00000347401 NCOR1P1Q9H4R4 102 aa11.59□□□□□ -0.55
COL6A3-202ENST00000347401 DNAJC4Q9NNZ3 241 aa11.59□□□□□ -0.55
COL6A3-202ENST00000347401 NDUFA2O43678 99 aa11.59□□□□□ -0.55
COL6A3-202ENST00000347401 PRSS2P07478 247 aa11.59□□□□□ -0.55
COL6A3-202ENST00000347401 PGPEP1Q9NXJ5 209 aa11.59□□□□□ -0.55
COL6A3-202ENST00000347401 PRNTQ86SH4 94 aa11.59□□□□□ -0.55
COL6A3-202ENST00000347401 OR4X2Q8NGF9 303 aa11.59□□□□□ -0.55
COL6A3-202ENST00000347401 MS4A7Q9GZW8 240 aaPredicted RBP11.59□□□□□ -0.55
COL6A3-202ENST00000347401 COA4Q9NYJ1 87 aa11.59□□□□□ -0.55
COL6A3-202ENST00000347401 HOXD4P09016 255 aaPredicted RBP11.58□□□□□ -0.56
COL6A3-202ENST00000347401 IGHV3-20A0A0C4DH32 117 aa11.58□□□□□ -0.56
COL6A3-202ENST00000347401 TRBV5-5A0A0J9YX44 114 aa11.58□□□□□ -0.56
COL6A3-202ENST00000347401 DLL1O00548 723 aa11.58□□□□□ -0.56
COL6A3-202ENST00000347401 VSIG8P0DPA2 414 aa11.58□□□□□ -0.56
COL6A3-202ENST00000347401 TMEM91Q6ZNR0 172 aa11.58□□□□□ -0.56
COL6A3-202ENST00000347401 SRSF5Q13243 272 aaKnown RBP11.58□□□□□ -0.56
COL6A3-202ENST00000347401 NDUFAF3Q9BU61 184 aa11.58□□□□□ -0.56
COL6A3-202ENST00000347401 YBX2Q9Y2T7 364 aaKnown RBP11.58□□□□□ -0.56
COL6A3-202ENST00000347401 A0A1B0GTL3 188 aa11.58□□□□□ -0.56
COL6A3-202ENST00000347401 TMPRSS2O15393 492 aa11.58□□□□□ -0.56
COL6A3-202ENST00000347401 HIST1H1AQ02539 215 aaPredicted RBP11.58□□□□□ -0.56
COL6A3-202ENST00000347401 C1orf100Q5SVJ3 147 aa11.58□□□□□ -0.56
COL6A3-202ENST00000347401 LYPD8Q6UX82 237 aa11.58□□□□□ -0.56
COL6A3-202ENST00000347401 ZNF430Q9H8G1 570 aaPredicted RBP11.58□□□□□ -0.56
COL6A3-202ENST00000347401 TMEM56-RWDD3S4R434 201 aa11.58□□□□□ -0.56
COL6A3-202ENST00000347401 A0A1B0GTH9 108 aa11.58□□□□□ -0.56
COL6A3-202ENST00000347401 PRRT4C9JH25 899 aa11.58□□□□□ -0.56
COL6A3-202ENST00000347401 J3QW42 95 aa11.58□□□□□ -0.56
COL6A3-202ENST00000347401 FCGR3AP08637 254 aa11.58□□□□□ -0.56
COL6A3-202ENST00000347401 FAM27BQ5VT28 67 aa11.58□□□□□ -0.56
COL6A3-202ENST00000347401 C5orf30Q96GV9 206 aa11.58□□□□□ -0.56
COL6A3-202ENST00000347401 TMEM177Q53S58 311 aa11.58□□□□□ -0.56
COL6A3-202ENST00000347401 OR2Y1Q8NGV0 311 aa11.58□□□□□ -0.56
COL6A3-202ENST00000347401 TMEM242Q9NWH2 141 aa11.58□□□□□ -0.56
COL6A3-202ENST00000347401 C21orf140B9A014 251 aa11.57□□□□□ -0.56
COL6A3-202ENST00000347401 MOSPD3O75425 235 aa11.57□□□□□ -0.56
COL6A3-202ENST00000347401 C10orf111Q8N326 155 aa11.57□□□□□ -0.56
COL6A3-202ENST00000347401 OR51G1Q8NGK1 321 aa11.57□□□□□ -0.56
COL6A3-202ENST00000347401 DEFB127Q9H1M4 99 aa11.57□□□□□ -0.56
COL6A3-202ENST00000347401 F2RL2O00254 374 aa11.57□□□□□ -0.56
COL6A3-202ENST00000347401 EDIL3O43854 480 aa11.57□□□□□ -0.56
COL6A3-202ENST00000347401 RRN3P1Q2M238 152 aa11.57□□□□□ -0.56
COL6A3-202ENST00000347401 ZNF683Q8IZ20 524 aa11.57□□□□□ -0.56
COL6A3-202ENST00000347401 ADAMTSL1Q8N6G6 1762 aa11.57□□□□□ -0.56
COL6A3-202ENST00000347401 GNG10P50151 68 aa11.57□□□□□ -0.56
COL6A3-202ENST00000347401 CEACAM21Q3KPI0 293 aa11.57□□□□□ -0.56
COL6A3-202ENST00000347401 FAM71F2Q6NXP2 309 aa11.57□□□□□ -0.56
COL6A3-202ENST00000347401 MOGAT3Q86VF5 341 aa11.57□□□□□ -0.56
COL6A3-202ENST00000347401 OR4C13Q8NGP0 309 aa11.57□□□□□ -0.56
COL6A3-202ENST00000347401 ERVH48-1M5A8F1 160 aa11.57□□□□□ -0.56
COL6A3-202ENST00000347401 LINC00614P0C842 121 aa11.57□□□□□ -0.56
COL6A3-202ENST00000347401 RCC1P18754 421 aaPredicted RBP11.57□□□□□ -0.56
COL6A3-202ENST00000347401 RPL8P62917 257 aaKnown RBP11.57□□□□□ -0.56
COL6A3-202ENST00000347401 ZIC1Q15915 447 aa11.57□□□□□ -0.56
COL6A3-202ENST00000347401 TMEM101Q96IK0 257 aa11.57□□□□□ -0.56
COL6A3-202ENST00000347401 GEMIN7Q9H840 131 aaKnown RBP11.57□□□□□ -0.56
COL6A3-202ENST00000347401 GPR132Q9UNW8 380 aa11.57□□□□□ -0.56
COL6A3-202ENST00000347401 SIP14410 1827 aa11.57□□□□□ -0.56
COL6A3-202ENST00000347401 A0A1W2PPC1 479 aa11.57□□□□□ -0.56
COL6A3-202ENST00000347401 PTGDSP41222 190 aa11.57□□□□□ -0.56
COL6A3-202ENST00000347401 ZNF600Q6ZNG1 722 aa11.57□□□□□ -0.56
COL6A3-202ENST00000347401 MMD2Q8IY49 270 aa11.57□□□□□ -0.56
COL6A3-202ENST00000347401 FAM222BQ8WU58 562 aa11.57□□□□□ -0.56
COL6A3-202ENST00000347401 TRAV8-7A0A075B6U6 113 aa11.57□□□□□ -0.56
COL6A3-202ENST00000347401 PSG2P11465 335 aa11.57□□□□□ -0.56
COL6A3-202ENST00000347401 RTN4RL1Q86UN2 441 aaPredicted RBP11.57□□□□□ -0.56
COL6A3-202ENST00000347401 GPBAR1Q8TDU6 330 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms