RNA–Protein interactions for RNA: ENST00000345512.7

PTPRU-201, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRU, Length 4,470 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-201ENST00000345512 OTX1P32242 354 aaPredicted RBP13.22□□□□□ -0.29
PTPRU-201ENST00000345512 NKX6-3A6NJ46 265 aa13.21□□□□□ -0.29
PTPRU-201ENST00000345512 B4E171 279 aa13.21□□□□□ -0.29
PTPRU-201ENST00000345512 GZMHP20718 246 aa13.21□□□□□ -0.29
PTPRU-201ENST00000345512 TSPAN7P41732 249 aa13.21□□□□□ -0.29
PTPRU-201ENST00000345512 SUB1P53999 127 aaKnown RBP eCLIP13.21□□□□□ -0.29
PTPRU-201ENST00000345512 CYP2G1PQ6ZSU1 146 aa13.21□□□□□ -0.29
PTPRU-201ENST00000345512 REC114Q7Z4M0 266 aa13.21□□□□□ -0.29
PTPRU-201ENST00000345512 OR4S2Q8NH73 311 aa13.21□□□□□ -0.29
PTPRU-201ENST00000345512 TRAV34A0A0B4J273 112 aa13.21□□□□□ -0.29
PTPRU-201ENST00000345512 OR10J1P30954 320 aa13.21□□□□□ -0.29
PTPRU-201ENST00000345512 SRP14P37108 136 aaKnown RBP13.21□□□□□ -0.29
PTPRU-201ENST00000345512 LIME1Q9H400 295 aa13.21□□□□□ -0.29
PTPRU-201ENST00000345512 PILRBQ9UKJ0 227 aa13.21□□□□□ -0.29
PTPRU-201ENST00000345512 SNURFLB1AK76 121 aa13.21□□□□□ -0.29
PTPRU-201ENST00000345512 CXorf1O96002 111 aa13.21□□□□□ -0.29
PTPRU-201ENST00000345512 SP1P08047 785 aa13.21□□□□□ -0.29
PTPRU-201ENST00000345512 LOC102723996A0A087X1L8 192 aa13.21□□□□□ -0.3
PTPRU-201ENST00000345512 COX7A2P2O60397 106 aa13.21□□□□□ -0.3
PTPRU-201ENST00000345512 ZNF253O75346 499 aa13.21□□□□□ -0.3
PTPRU-201ENST00000345512 HIST1H1BP16401 226 aaKnown RBP13.21□□□□□ -0.3
PTPRU-201ENST00000345512 PAX5Q02548 391 aa13.21□□□□□ -0.3
PTPRU-201ENST00000345512 COL10A1Q03692 680 aa13.21□□□□□ -0.3
PTPRU-201ENST00000345512 ZNF600Q6ZNG1 722 aa13.21□□□□□ -0.3
PTPRU-201ENST00000345512 TPPP3Q9BW30 176 aa13.21□□□□□ -0.3
PTPRU-201ENST00000345512 VSIRQ9H7M9 311 aa13.21□□□□□ -0.3
PTPRU-201ENST00000345512 ZNF25P17030 456 aaPredicted RBP13.2□□□□□ -0.3
PTPRU-201ENST00000345512 OR5AU1Q8NGC0 362 aa13.2□□□□□ -0.3
PTPRU-201ENST00000345512 PXMP4Q9Y6I8 212 aa13.2□□□□□ -0.3
PTPRU-201ENST00000345512 LRRC30A6NM36 301 aa13.2□□□□□ -0.3
PTPRU-201ENST00000345512 UCP2P55851 309 aa13.2□□□□□ -0.3
PTPRU-201ENST00000345512 PYY3Q5JQD4 70 aa13.2□□□□□ -0.3
PTPRU-201ENST00000345512 OR1L6Q8NGR2 347 aa13.2□□□□□ -0.3
PTPRU-201ENST00000345512 OR10X1Q8NGY0 326 aa13.2□□□□□ -0.3
PTPRU-201ENST00000345512 VN1R17PQ8TDU5 208 aa13.2□□□□□ -0.3
PTPRU-201ENST00000345512 ADH4P08319 380 aa13.2□□□□□ -0.3
PTPRU-201ENST00000345512 SOX8P57073 446 aa13.2□□□□□ -0.3
PTPRU-201ENST00000345512 TMEM210A6NLX4 147 aa13.19□□□□□ -0.3
PTPRU-201ENST00000345512 NPY1RP25929 384 aa13.19□□□□□ -0.3
PTPRU-201ENST00000345512 MRPS11P82912 194 aaKnown RBP13.19□□□□□ -0.3
PTPRU-201ENST00000345512 HGFACQ04756 655 aa13.19□□□□□ -0.3
PTPRU-201ENST00000345512 MIC13Q5XKP0 118 aa13.19□□□□□ -0.3
PTPRU-201ENST00000345512 OR4X1Q8NH49 305 aa13.19□□□□□ -0.3
PTPRU-201ENST00000345512 ZDHHC16Q969W1 377 aa13.19□□□□□ -0.3
PTPRU-201ENST00000345512 MARCH11A6NNE9 402 aa13.19□□□□□ -0.3
PTPRU-201ENST00000345512 RAB7AP51149 207 aa13.19□□□□□ -0.3
PTPRU-201ENST00000345512 HNRNPA3P51991 378 aaKnown RBP13.19□□□□□ -0.3
PTPRU-201ENST00000345512 C1QL4Q86Z23 238 aa13.19□□□□□ -0.3
PTPRU-201ENST00000345512 C1orf210Q8IVY1 113 aa13.19□□□□□ -0.3
PTPRU-201ENST00000345512 DECR2Q9NUI1 292 aa13.19□□□□□ -0.3
PTPRU-201ENST00000345512 LINC00470Q9BZP3 86 aa13.19□□□□□ -0.3
PTPRU-201ENST00000345512 IL17BQ9UHF5 180 aa13.19□□□□□ -0.3
PTPRU-201ENST00000345512 SPTBN2O15020 2390 aa13.19□□□□□ -0.3
PTPRU-201ENST00000345512 ODAMA1E959 279 aa13.19□□□□□ -0.3
PTPRU-201ENST00000345512 KLF7O75840 302 aaPredicted RBP13.19□□□□□ -0.3
PTPRU-201ENST00000345512 MRPL54Q6P161 138 aaKnown RBP13.19□□□□□ -0.3
PTPRU-201ENST00000345512 TEPPQ6URK8 271 aa13.19□□□□□ -0.3
PTPRU-201ENST00000345512 KLHDC1Q8N7A1 406 aa13.19□□□□□ -0.3
PTPRU-201ENST00000345512 DDA1Q9BW61 102 aa13.19□□□□□ -0.3
PTPRU-201ENST00000345512 OR6C3Q9NZP0 311 aa13.19□□□□□ -0.3
PTPRU-201ENST00000345512 CLDN14O95500 239 aa13.18□□□□□ -0.3
PTPRU-201ENST00000345512 SLC35B1P78383 322 aa13.18□□□□□ -0.3
PTPRU-201ENST00000345512 IL15RAQ13261 267 aa13.18□□□□□ -0.3
PTPRU-201ENST00000345512 TMEM45BQ96B21 275 aa13.18□□□□□ -0.3
PTPRU-201ENST00000345512 HELTA6NFD8 242 aa13.18□□□□□ -0.3
PTPRU-201ENST00000345512 GABRA6Q16445 453 aa13.18□□□□□ -0.3
PTPRU-201ENST00000345512 HLA-DRB5Q30154 266 aa13.18□□□□□ -0.3
PTPRU-201ENST00000345512 NMSQ5H8A3 153 aa13.18□□□□□ -0.3
PTPRU-201ENST00000345512 SIGLEC12Q96PQ1 595 aa13.18□□□□□ -0.3
PTPRU-201ENST00000345512 RAB29O14966 203 aa13.18□□□□□ -0.3
PTPRU-201ENST00000345512 CD55P08174 381 aa13.18□□□□□ -0.3
PTPRU-201ENST00000345512 RNF224P0DH78 156 aa13.18□□□□□ -0.3
PTPRU-201ENST00000345512 ABLIM2Q6H8Q1 611 aa13.18□□□□□ -0.3
PTPRU-201ENST00000345512 LYPD6Q86Y78 171 aa13.18□□□□□ -0.3
PTPRU-201ENST00000345512 ZADH2Q8N4Q0 377 aa13.18□□□□□ -0.3
PTPRU-201ENST00000345512 NAGKQ9UJ70 344 aa13.18□□□□□ -0.3
PTPRU-201ENST00000345512 IGHV3OR15-7A0A075B7D8 119 aa13.17□□□□□ -0.3
PTPRU-201ENST00000345512 A0A1B0GW64 132 aa13.17□□□□□ -0.3
PTPRU-201ENST00000345512 SOD3P08294 240 aa13.17□□□□□ -0.3
PTPRU-201ENST00000345512 CT45A6P0DMU7 189 aa13.17□□□□□ -0.3
PTPRU-201ENST00000345512 CT45A5P0DMU8 189 aa13.17□□□□□ -0.3
PTPRU-201ENST00000345512 CT45A7P0DMV0 189 aa13.17□□□□□ -0.3
PTPRU-201ENST00000345512 FOXG1P55316 489 aaPredicted RBP13.17□□□□□ -0.3
PTPRU-201ENST00000345512 CT45A1Q5HYN5 189 aa13.17□□□□□ -0.3
PTPRU-201ENST00000345512 INO80CQ6PI98 192 aaPredicted RBP13.17□□□□□ -0.3
PTPRU-201ENST00000345512 CT45A3Q8NHU0 189 aa13.17□□□□□ -0.3
PTPRU-201ENST00000345512 NPVFQ9HCQ7 196 aa13.17□□□□□ -0.3
PTPRU-201ENST00000345512 ZNF407Q9C0G0 2248 aa13.17□□□□□ -0.3
PTPRU-201ENST00000345512 TRAV24A0A0B4J272 114 aa13.17□□□□□ -0.3
PTPRU-201ENST00000345512 HPRT1P00492 218 aa13.17□□□□□ -0.3
PTPRU-201ENST00000345512 PRDX2P32119 198 aa13.17□□□□□ -0.3
PTPRU-201ENST00000345512 BPIFB3P59826 476 aa13.17□□□□□ -0.3
PTPRU-201ENST00000345512 TFF3Q07654 80 aa13.17□□□□□ -0.3
PTPRU-201ENST00000345512 HSPB9Q9BQS6 159 aa13.17□□□□□ -0.3
PTPRU-201ENST00000345512 TMEM167BQ9NRX6 74 aa13.17□□□□□ -0.3
PTPRU-201ENST00000345512 DEPPQ9NTK1 212 aa13.17□□□□□ -0.3
PTPRU-201ENST00000345512 C21orf140B9A014 251 aa13.17□□□□□ -0.3
PTPRU-201ENST00000345512 WNT9BO14905 357 aa13.17□□□□□ -0.3
PTPRU-201ENST00000345512 SSTR5P35346 364 aa13.17□□□□□ -0.3
PTPRU-201ENST00000345512 RPL23P62829 140 aaKnown RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms