RNA–Protein interactions for RNA: ENST00000344726.9

HMGN3-202, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN3, Length 872 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-202ENST00000344726 TFAP2AP05549 437 aa11.25□□□□□ -0.61
HMGN3-202ENST00000344726 GSTP1P09211 210 aaKnown RBP11.25□□□□□ -0.61
HMGN3-202ENST00000344726 EGR2P11161 476 aaPredicted RBP11.25□□□□□ -0.61
HMGN3-202ENST00000344726 TGFBR1P36897 503 aa11.25□□□□□ -0.61
HMGN3-202ENST00000344726 PSG5Q15238 335 aa11.25□□□□□ -0.61
HMGN3-202ENST00000344726 SRSF7Q16629 238 aaKnown RBP eCLIP11.25□□□□□ -0.61
HMGN3-202ENST00000344726 HACD4Q5VWC8 232 aa11.25□□□□□ -0.61
HMGN3-202ENST00000344726 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.25□□□□□ -0.61
HMGN3-202ENST00000344726 NUDCD2Q8WVJ2 157 aa11.25□□□□□ -0.61
HMGN3-202ENST00000344726 SLC25A38Q96DW6 304 aa11.25□□□□□ -0.61
HMGN3-202ENST00000344726 TRAV41A0A0B4J266 112 aa11.24□□□□□ -0.61
HMGN3-202ENST00000344726 TMEM235A6NFC5 223 aa11.24□□□□□ -0.61
HMGN3-202ENST00000344726 CCL24O00175 119 aa11.24□□□□□ -0.61
HMGN3-202ENST00000344726 SSX5O60225 188 aa11.24□□□□□ -0.61
HMGN3-202ENST00000344726 SOX15O60248 233 aa11.24□□□□□ -0.61
HMGN3-202ENST00000344726 OR5H8P0DN80 308 aa11.24□□□□□ -0.61
HMGN3-202ENST00000344726 DTYMKP23919 212 aa11.24□□□□□ -0.61
HMGN3-202ENST00000344726 TALDO1P37837 337 aa11.24□□□□□ -0.61
HMGN3-202ENST00000344726 CRIP2P52943 208 aaPredicted RBP11.24□□□□□ -0.61
HMGN3-202ENST00000344726 CX3CL1P78423 397 aa11.24□□□□□ -0.61
HMGN3-202ENST00000344726 ZNF260Q3ZCT1 412 aa11.24□□□□□ -0.61
HMGN3-202ENST00000344726 C4orf48Q5BLP8 95 aa11.24□□□□□ -0.61
HMGN3-202ENST00000344726 H1FOOQ8IZA3 346 aaPredicted RBP11.24□□□□□ -0.61
HMGN3-202ENST00000344726 MINDY2Q8NBR6 621 aa11.24□□□□□ -0.61
HMGN3-202ENST00000344726 CLCC1Q96S66 551 aa11.24□□□□□ -0.61
HMGN3-202ENST00000344726 RNF5Q99942 180 aa11.24□□□□□ -0.61
HMGN3-202ENST00000344726 TPSG1Q9NRR2 321 aa11.24□□□□□ -0.61
HMGN3-202ENST00000344726 RHBDL2Q9NX52 303 aa11.24□□□□□ -0.61
HMGN3-202ENST00000344726 METTL1Q9UBP6 276 aaKnown RBP11.24□□□□□ -0.61
HMGN3-202ENST00000344726 DUS4LO95620 317 aaKnown RBP11.23□□□□□ -0.61
HMGN3-202ENST00000344726 IGLV2-23P01705 113 aa11.23□□□□□ -0.61
HMGN3-202ENST00000344726 SMCPP49901 116 aaPredicted RBP11.23□□□□□ -0.61
HMGN3-202ENST00000344726 RPS16P62249 146 aaKnown RBP11.23□□□□□ -0.61
HMGN3-202ENST00000344726 ARL6IP1Q15041 203 aa11.23□□□□□ -0.61
HMGN3-202ENST00000344726 PLGLAQ15195 96 aa11.23□□□□□ -0.61
HMGN3-202ENST00000344726 ECSCRQ19T08 205 aa11.23□□□□□ -0.61
HMGN3-202ENST00000344726 IDNKQ5T6J7 187 aa11.23□□□□□ -0.61
HMGN3-202ENST00000344726 ZNF660Q6AZW8 331 aaPredicted RBP11.23□□□□□ -0.61
HMGN3-202ENST00000344726 PDPNQ86YL7 162 aa11.23□□□□□ -0.61
HMGN3-202ENST00000344726 ZNF491Q8N8L2 437 aa11.23□□□□□ -0.61
HMGN3-202ENST00000344726 C4orf3Q8WVX3 66 aa11.23□□□□□ -0.61
HMGN3-202ENST00000344726 GINS4Q9BRT9 223 aa11.23□□□□□ -0.61
HMGN3-202ENST00000344726 FAM103A1Q9BTL3 118 aaKnown RBP11.23□□□□□ -0.61
HMGN3-202ENST00000344726 ST6GALNAC5Q9BVH7 336 aa11.23□□□□□ -0.61
HMGN3-202ENST00000344726 GNB4Q9HAV0 340 aa11.23□□□□□ -0.61
HMGN3-202ENST00000344726 SLC35D1Q9NTN3 355 aa11.23□□□□□ -0.61
HMGN3-202ENST00000344726 NUBP2Q9Y5Y2 271 aa11.23□□□□□ -0.61
HMGN3-202ENST00000344726 LCE2BO14633 110 aa11.22□□□□□ -0.61
HMGN3-202ENST00000344726 CA2P00918 260 aa11.22□□□□□ -0.61
HMGN3-202ENST00000344726 APOA2P02652 100 aa11.22□□□□□ -0.61
HMGN3-202ENST00000344726 SSBP2P81877 361 aaPredicted RBP11.22□□□□□ -0.61
HMGN3-202ENST00000344726 TSPAN14Q8NG11 270 aa11.22□□□□□ -0.61
HMGN3-202ENST00000344726 CASTOR1Q8WTX7 329 aa11.22□□□□□ -0.61
HMGN3-202ENST00000344726 YIPF6Q96EC8 236 aa11.22□□□□□ -0.61
HMGN3-202ENST00000344726 A3GALT2U3KPV4 340 aa11.22□□□□□ -0.61
HMGN3-202ENST00000344726 A0A1W2PN81 502 aa11.21□□□□□ -0.61
HMGN3-202ENST00000344726 LINC00473A8K010 186 aa11.21□□□□□ -0.61
HMGN3-202ENST00000344726 I3L521 148 aa11.21□□□□□ -0.61
HMGN3-202ENST00000344726 J3QRK9 145 aa11.21□□□□□ -0.61
HMGN3-202ENST00000344726 ARPC1BO15143 372 aaKnown RBP11.21□□□□□ -0.61
HMGN3-202ENST00000344726 SLC25A17O43808 307 aa11.21□□□□□ -0.61
HMGN3-202ENST00000344726 SCGNO76038 276 aa11.21□□□□□ -0.61
HMGN3-202ENST00000344726 SPDEFO95238 335 aa11.21□□□□□ -0.61
HMGN3-202ENST00000344726 CRYGBP07316 175 aa11.21□□□□□ -0.61
HMGN3-202ENST00000344726 CHRNA7P36544 502 aa11.21□□□□□ -0.61
HMGN3-202ENST00000344726 RAB9AP51151 201 aa11.21□□□□□ -0.61
HMGN3-202ENST00000344726 SCAND1P57086 179 aa11.21□□□□□ -0.61
HMGN3-202ENST00000344726 RAB25P57735 213 aa11.21□□□□□ -0.61
HMGN3-202ENST00000344726 FHL3Q13643 280 aa11.21□□□□□ -0.61
HMGN3-202ENST00000344726 ASPHD1Q5U4P2 390 aa11.21□□□□□ -0.61
HMGN3-202ENST00000344726 BVESQ8NE79 360 aa11.21□□□□□ -0.61
HMGN3-202ENST00000344726 DDB2Q92466 427 aa11.21□□□□□ -0.61
HMGN3-202ENST00000344726 FLYWCH2Q96CP2 140 aaKnown RBP11.21□□□□□ -0.61
HMGN3-202ENST00000344726 UBE2E2Q96LR5 201 aa11.21□□□□□ -0.61
HMGN3-202ENST00000344726 TSNAXQ99598 290 aaKnown RBP11.21□□□□□ -0.61
HMGN3-202ENST00000344726 DCSTAMPQ9H295 470 aa11.21□□□□□ -0.61
HMGN3-202ENST00000344726 ETV7Q9Y603 341 aa11.21□□□□□ -0.61
HMGN3-202ENST00000344726 SORL1Q92673 2214 aa11.21□□□□□ -0.62
HMGN3-202ENST00000344726 TRAV18A0A075B6X5 111 aa11.2□□□□□ -0.62
HMGN3-202ENST00000344726 A0A087WXM4 84 aa11.2□□□□□ -0.62
HMGN3-202ENST00000344726 IGKV1D-13A0A0B4J2D9 117 aa11.2□□□□□ -0.62
HMGN3-202ENST00000344726 SRRM4A7MD48 611 aaKnown RBP11.2□□□□□ -0.62
HMGN3-202ENST00000344726 TNFAIP8O95379 198 aa11.2□□□□□ -0.62
HMGN3-202ENST00000344726 IGKV1-13P0DP09 117 aa11.2□□□□□ -0.62
HMGN3-202ENST00000344726 NFYAP23511 347 aaPredicted RBP11.2□□□□□ -0.62
HMGN3-202ENST00000344726 DUTP33316 252 aaKnown RBP11.2□□□□□ -0.62
HMGN3-202ENST00000344726 LUMP51884 338 aaPredicted RBP11.2□□□□□ -0.62
HMGN3-202ENST00000344726 GNG2P59768 71 aa11.2□□□□□ -0.62
HMGN3-202ENST00000344726 GNB1P62873 340 aa11.2□□□□□ -0.62
HMGN3-202ENST00000344726 PITPNAQ00169 270 aa11.2□□□□□ -0.62
HMGN3-202ENST00000344726 PJVKQ0ZLH3 352 aa11.2□□□□□ -0.62
HMGN3-202ENST00000344726 TMEM65Q6PI78 240 aa11.2□□□□□ -0.62
HMGN3-202ENST00000344726 ZNF562Q6V9R5 426 aa11.2□□□□□ -0.62
HMGN3-202ENST00000344726 PPP1R27Q86WC6 154 aa11.2□□□□□ -0.62
HMGN3-202ENST00000344726 OR11H1Q8NG94 326 aa11.2□□□□□ -0.62
HMGN3-202ENST00000344726 ABHD5Q8WTS1 349 aa11.2□□□□□ -0.62
HMGN3-202ENST00000344726 OR5B12Q96R08 314 aa11.2□□□□□ -0.62
HMGN3-202ENST00000344726 FOXA2Q9Y261 457 aaPredicted RBP11.2□□□□□ -0.62
HMGN3-202ENST00000344726 RBM7Q9Y580 266 aaKnown RBP11.2□□□□□ -0.62
HMGN3-202ENST00000344726 TRIM64CA6NLI5 447 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms