RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 OR2V2Q96R30 315 aa16.14■□□□□ 0.17
COL9A3-201ENST00000343916 AGMATQ9BSE5 352 aa16.14■□□□□ 0.17
COL9A3-201ENST00000343916 SMDT1Q9H4I9 107 aa16.14■□□□□ 0.17
COL9A3-201ENST00000343916 PLCE1Q9P212 2302 aa16.14■□□□□ 0.17
COL9A3-201ENST00000343916 P0C879 139 aa16.13■□□□□ 0.17
COL9A3-201ENST00000343916 RPS10P46783 165 aaKnown RBP16.13■□□□□ 0.17
COL9A3-201ENST00000343916 LRRC75BQ2VPJ9 315 aa16.13■□□□□ 0.17
COL9A3-201ENST00000343916 LURAP1LQ8IV03 231 aa16.13■□□□□ 0.17
COL9A3-201ENST00000343916 GCSAMQ8N6F7 178 aa16.13■□□□□ 0.17
COL9A3-201ENST00000343916 ZNRF1Q8ND25 227 aa16.13■□□□□ 0.17
COL9A3-201ENST00000343916 MALSU1Q96EH3 234 aa16.13■□□□□ 0.17
COL9A3-201ENST00000343916 TOLLIPQ9H0E2 274 aa16.13■□□□□ 0.17
COL9A3-201ENST00000343916 GNG13Q9P2W3 67 aa16.13■□□□□ 0.17
COL9A3-201ENST00000343916 HSPB7Q9UBY9 170 aa16.13■□□□□ 0.17
COL9A3-201ENST00000343916 DCHS1Q96JQ0 3298 aa16.13■□□□□ 0.17
COL9A3-201ENST00000343916 A0A1B0GWJ7 208 aa16.13■□□□□ 0.17
COL9A3-201ENST00000343916 LRRC30A6NM36 301 aa16.13■□□□□ 0.17
COL9A3-201ENST00000343916 SRRM5B3KS81 715 aa16.13■□□□□ 0.17
COL9A3-201ENST00000343916 PPIHO43447 177 aaKnown RBP16.13■□□□□ 0.17
COL9A3-201ENST00000343916 YIF1AO95070 293 aa16.13■□□□□ 0.17
COL9A3-201ENST00000343916 ELLP55199 621 aaPredicted RBP16.13■□□□□ 0.17
COL9A3-201ENST00000343916 SLC38A11Q08AI6 406 aa16.13■□□□□ 0.17
COL9A3-201ENST00000343916 SNIP1Q8TAD8 396 aaKnown RBP16.13■□□□□ 0.17
COL9A3-201ENST00000343916 BSNQ9UPA5 3926 aa16.13■□□□□ 0.17
COL9A3-201ENST00000343916 FAM90A26D6RGX4 464 aa16.12■□□□□ 0.17
COL9A3-201ENST00000343916 H3BQ15 152 aa16.12■□□□□ 0.17
COL9A3-201ENST00000343916 SPRY3O43610 288 aa16.12■□□□□ 0.17
COL9A3-201ENST00000343916 ZG16O60844 167 aa16.12■□□□□ 0.17
COL9A3-201ENST00000343916 RBMXL2O75526 392 aaKnown RBP16.12■□□□□ 0.17
COL9A3-201ENST00000343916 S100PP25815 95 aa16.12■□□□□ 0.17
COL9A3-201ENST00000343916 FAM201AQ5SY85 155 aa16.12■□□□□ 0.17
COL9A3-201ENST00000343916 IGFL3Q6UXB1 125 aa16.12■□□□□ 0.17
COL9A3-201ENST00000343916 DPPA3Q6W0C5 159 aa16.12■□□□□ 0.17
COL9A3-201ENST00000343916 RBMXL1Q96E39 390 aaKnown RBP16.12■□□□□ 0.17
COL9A3-201ENST00000343916 WDR61Q9GZS3 305 aaKnown RBP16.12■□□□□ 0.17
COL9A3-201ENST00000343916 ZNF665Q9H7R5 613 aa16.12■□□□□ 0.17
COL9A3-201ENST00000343916 ZFP92A6NM28 416 aa16.12■□□□□ 0.17
COL9A3-201ENST00000343916 SPINT2O43291 252 aa16.12■□□□□ 0.17
COL9A3-201ENST00000343916 IFNA17P01571 189 aa16.12■□□□□ 0.17
COL9A3-201ENST00000343916 MSMO1Q15800 293 aa16.12■□□□□ 0.17
COL9A3-201ENST00000343916 ZNF506Q5JVG8 444 aa16.12■□□□□ 0.17
COL9A3-201ENST00000343916 TMEM14EPQ6UXP3 125 aa16.12■□□□□ 0.17
COL9A3-201ENST00000343916 HEPN1Q6WQI6 88 aa16.12■□□□□ 0.17
COL9A3-201ENST00000343916 C22orf34Q6ZV56 151 aa16.12■□□□□ 0.17
COL9A3-201ENST00000343916 MOGAT3Q86VF5 341 aa16.12■□□□□ 0.17
COL9A3-201ENST00000343916 DMXL2Q8TDJ6 3036 aa16.12■□□□□ 0.17
COL9A3-201ENST00000343916 CUL9Q8IWT3 2517 aa16.11■□□□□ 0.17
COL9A3-201ENST00000343916 IGHV2-70P01814 119 aa16.11■□□□□ 0.17
COL9A3-201ENST00000343916 HBE1P02100 147 aa16.11■□□□□ 0.17
COL9A3-201ENST00000343916 KIAA0141Q14154 515 aaPredicted RBP16.11■□□□□ 0.17
COL9A3-201ENST00000343916 TIMM23BQ5SRD1 257 aa16.11■□□□□ 0.17
COL9A3-201ENST00000343916 Q6ZS92 163 aa16.11■□□□□ 0.17
COL9A3-201ENST00000343916 LINC00469Q8N7U9 141 aa16.11■□□□□ 0.17
COL9A3-201ENST00000343916 YPEL4Q96NS1 127 aa16.11■□□□□ 0.17
COL9A3-201ENST00000343916 CTNNBIP1Q9NSA3 81 aaPredicted RBP16.11■□□□□ 0.17
COL9A3-201ENST00000343916 WASF3Q9UPY6 502 aa16.11■□□□□ 0.17
COL9A3-201ENST00000343916 PROP1O75360 226 aa16.11■□□□□ 0.17
COL9A3-201ENST00000343916 CRYAAP02489 173 aa16.11■□□□□ 0.17
COL9A3-201ENST00000343916 RAB2AP61019 212 aa16.11■□□□□ 0.17
COL9A3-201ENST00000343916 ZNF343Q6P1L6 599 aa16.11■□□□□ 0.17
COL9A3-201ENST00000343916 H2BFWTQ7Z2G1 175 aa16.11■□□□□ 0.17
COL9A3-201ENST00000343916 FAM169BQ8N8A8 192 aa16.11■□□□□ 0.17
COL9A3-201ENST00000343916 RCC1LQ96I51 464 aaKnown RBP16.11■□□□□ 0.17
COL9A3-201ENST00000343916 GNG12Q9UBI6 72 aa16.11■□□□□ 0.17
COL9A3-201ENST00000343916 KLK10O43240 276 aa16.1■□□□□ 0.17
COL9A3-201ENST00000343916 HSPB1P04792 205 aaKnown RBP16.1■□□□□ 0.17
COL9A3-201ENST00000343916 NCR3LG1Q68D85 454 aa16.1■□□□□ 0.17
COL9A3-201ENST00000343916 ZNF787Q6DD87 383 aa16.1■□□□□ 0.17
COL9A3-201ENST00000343916 RBMXL3Q8N7X1 1067 aaKnown RBP16.1■□□□□ 0.17
COL9A3-201ENST00000343916 TAF15Q92804 592 aaKnown RBP eCLIP16.1■□□□□ 0.17
COL9A3-201ENST00000343916 RAB39BQ96DA2 213 aa16.1■□□□□ 0.17
COL9A3-201ENST00000343916 FAM234AQ9H0X4 552 aa16.1■□□□□ 0.17
COL9A3-201ENST00000343916 TMPRSS5Q9H3S3 457 aa16.1■□□□□ 0.17
COL9A3-201ENST00000343916 MARCH11A6NNE9 402 aa16.1■□□□□ 0.17
COL9A3-201ENST00000343916 SELLP14151 372 aa16.1■□□□□ 0.17
COL9A3-201ENST00000343916 EDDM3BP56851 147 aa16.1■□□□□ 0.17
COL9A3-201ENST00000343916 KLF3P57682 345 aaPredicted RBP16.1■□□□□ 0.17
COL9A3-201ENST00000343916 ZNF429Q86V71 674 aa16.1■□□□□ 0.17
COL9A3-201ENST00000343916 MUCL1Q96DR8 90 aa16.1■□□□□ 0.17
COL9A3-201ENST00000343916 PSMG3Q9BT73 122 aaPredicted RBP16.1■□□□□ 0.17
COL9A3-201ENST00000343916 HIPK2Q9H2X6 1198 aa16.1■□□□□ 0.17
COL9A3-201ENST00000343916 URGCP-MRPS24S4R325 110 aa16.1■□□□□ 0.17
COL9A3-201ENST00000343916 CLDN14O95500 239 aa16.09■□□□□ 0.17
COL9A3-201ENST00000343916 MZT1Q08AG7 82 aa16.09■□□□□ 0.17
COL9A3-201ENST00000343916 UTF1Q5T230 341 aa16.09■□□□□ 0.17
COL9A3-201ENST00000343916 DTD1Q8TEA8 209 aa16.09■□□□□ 0.17
COL9A3-201ENST00000343916 GGACTQ9BVM4 153 aa16.09■□□□□ 0.17
COL9A3-201ENST00000343916 ACACAQ13085 2346 aa16.09■□□□□ 0.17
COL9A3-201ENST00000343916 DSCAMO60469 2012 aa16.09■□□□□ 0.17
COL9A3-201ENST00000343916 ANKRD11Q6UB99 2663 aaPredicted RBP16.09■□□□□ 0.17
COL9A3-201ENST00000343916 TRAV1-1A0A0B4J248 108 aa16.09■□□□□ 0.17
COL9A3-201ENST00000343916 HTD2P86397 168 aa16.09■□□□□ 0.17
COL9A3-201ENST00000343916 FAM27E3Q08E93 113 aa16.09■□□□□ 0.17
COL9A3-201ENST00000343916 C1orf185Q5T7R7 199 aa16.09■□□□□ 0.17
COL9A3-201ENST00000343916 C1orf174Q8IYL3 243 aa16.09■□□□□ 0.17
COL9A3-201ENST00000343916 ITLN1Q8WWA0 313 aa16.09■□□□□ 0.17
COL9A3-201ENST00000343916 MEGF10Q96KG7 1140 aa16.09■□□□□ 0.17
COL9A3-201ENST00000343916 UNKLQ9H9P5 680 aaKnown RBP16.09■□□□□ 0.17
COL9A3-201ENST00000343916 LOC102723971A0A1B0GUV8 181 aa16.08■□□□□ 0.17
COL9A3-201ENST00000343916 IGKV1D-33P01593 117 aa16.08■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms