RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 IGHV4-39P01824 125 aa15.42■□□□□ 0.06
SMAD4-201ENST00000342988 DMRTA1Q5VZB9 504 aa15.42■□□□□ 0.06
SMAD4-201ENST00000342988 DSPPQ9NZW4 1301 aa15.42■□□□□ 0.06
SMAD4-201ENST00000342988 CST9LQ9H4G1 147 aa15.41■□□□□ 0.06
SMAD4-201ENST00000342988 DLL1O00548 723 aa15.41■□□□□ 0.06
SMAD4-201ENST00000342988 PSG2P11465 335 aa15.41■□□□□ 0.06
SMAD4-201ENST00000342988 AMER3Q8N944 861 aa15.41■□□□□ 0.06
SMAD4-201ENST00000342988 GPBAR1Q8TDU6 330 aa15.41■□□□□ 0.06
SMAD4-201ENST00000342988 ABCA3Q99758 1704 aa15.41■□□□□ 0.06
SMAD4-201ENST00000342988 SLC6A13Q9NSD5 602 aa15.41■□□□□ 0.06
SMAD4-201ENST00000342988 BTAF1O14981 1849 aa15.41■□□□□ 0.06
SMAD4-201ENST00000342988 F8WEM9 126 aa15.41■□□□□ 0.06
SMAD4-201ENST00000342988 SOSTQ9BQB4 213 aa15.41■□□□□ 0.06
SMAD4-201ENST00000342988 TFPI2P48307 235 aa15.41■□□□□ 0.06
SMAD4-201ENST00000342988 RPS11P62280 158 aaKnown RBP eCLIP15.41■□□□□ 0.06
SMAD4-201ENST00000342988 CXorf66Q5JRM2 361 aaPredicted RBP15.41■□□□□ 0.06
SMAD4-201ENST00000342988 PIMREGQ9BSJ6 248 aa15.41■□□□□ 0.06
SMAD4-201ENST00000342988 SPNP16150 400 aa15.41■□□□□ 0.06
SMAD4-201ENST00000342988 RAE1P78406 368 aaKnown RBP15.41■□□□□ 0.06
SMAD4-201ENST00000342988 TSPO2Q5TGU0 170 aa15.41■□□□□ 0.06
SMAD4-201ENST00000342988 DTX1Q86Y01 620 aa15.41■□□□□ 0.06
SMAD4-201ENST00000342988 DMRT1Q9Y5R6 373 aa15.41■□□□□ 0.06
SMAD4-201ENST00000342988 KCNE3Q9Y6H6 103 aa15.41■□□□□ 0.06
SMAD4-201ENST00000342988 NDUFB4O95168 129 aa15.41■□□□□ 0.06
SMAD4-201ENST00000342988 MUC1P15941 1255 aaPredicted RBP15.41■□□□□ 0.06
SMAD4-201ENST00000342988 KIRREL2Q6UWL6 708 aa15.41■□□□□ 0.06
SMAD4-201ENST00000342988 MBD1Q9UIS9 605 aaPredicted RBP15.41■□□□□ 0.06
SMAD4-201ENST00000342988 hCG_38984A0A1B0GV85 526 aa15.4■□□□□ 0.06
SMAD4-201ENST00000342988 GAGE2EQ4V326 116 aa15.4■□□□□ 0.06
SMAD4-201ENST00000342988 FAM89BQ8N5H3 189 aa15.4■□□□□ 0.06
SMAD4-201ENST00000342988 MMP25Q9NPA2 562 aa15.4■□□□□ 0.06
SMAD4-201ENST00000342988 GAGE2DQ9UEU5 116 aa15.4■□□□□ 0.06
SMAD4-201ENST00000342988 SBF1O95248 1867 aa15.4■□□□□ 0.06
SMAD4-201ENST00000342988 A0A1B0GW15 77 aa15.4■□□□□ 0.06
SMAD4-201ENST00000342988 ZNF645Q8N7E2 425 aa15.4■□□□□ 0.06
SMAD4-201ENST00000342988 LINC00869P0C866 280 aa15.4■□□□□ 0.06
SMAD4-201ENST00000342988 AGAP20933 346 aa15.4■□□□□ 0.06
SMAD4-201ENST00000342988 EAF1Q96JC9 268 aaPredicted RBP15.4■□□□□ 0.06
SMAD4-201ENST00000342988 ZNF576Q9H609 170 aa15.4■□□□□ 0.06
SMAD4-201ENST00000342988 HSPB1P04792 205 aaKnown RBP15.4■□□□□ 0.06
SMAD4-201ENST00000342988 ATXN8Q156A1 80 aa15.4■□□□□ 0.06
SMAD4-201ENST00000342988 EEF1AKMT3Q96AZ1 226 aa15.4■□□□□ 0.06
SMAD4-201ENST00000342988 SCGB3A1Q96QR1 104 aa15.4■□□□□ 0.06
SMAD4-201ENST00000342988 SDF2L1Q9HCN8 221 aa15.4■□□□□ 0.06
SMAD4-201ENST00000342988 TOMM7Q9P0U1 55 aa15.4■□□□□ 0.06
SMAD4-201ENST00000342988 RPL8P62917 257 aaKnown RBP15.4■□□□□ 0.06
SMAD4-201ENST00000342988 FOXC1Q12948 553 aa15.4■□□□□ 0.06
SMAD4-201ENST00000342988 TMEM179BQ7Z7N9 219 aa15.4■□□□□ 0.06
SMAD4-201ENST00000342988 PGLYRP3Q96LB9 341 aa15.4■□□□□ 0.06
SMAD4-201ENST00000342988 TNFSF14O43557 240 aa15.4■□□□□ 0.06
SMAD4-201ENST00000342988 TDGF1P3P51864 188 aa15.4■□□□□ 0.06
SMAD4-201ENST00000342988 OR8B12Q8NGG6 310 aa15.4■□□□□ 0.06
SMAD4-201ENST00000342988 ACACAQ13085 2346 aa15.4■□□□□ 0.06
SMAD4-201ENST00000342988 SYNGR3O43761 229 aa15.39■□□□□ 0.05
SMAD4-201ENST00000342988 SRIP30626 198 aa15.39■□□□□ 0.05
SMAD4-201ENST00000342988 ZNF818PQ6ZRF7 136 aa15.39■□□□□ 0.05
SMAD4-201ENST00000342988 SELENOPP49908 381 aa15.39■□□□□ 0.05
SMAD4-201ENST00000342988 ZNF658BQ4V348 819 aaPredicted RBP15.39■□□□□ 0.05
SMAD4-201ENST00000342988 A0A0B4J2E0 115 aa15.39■□□□□ 0.05
SMAD4-201ENST00000342988 A0A1B0GX12 115 aa15.39■□□□□ 0.05
SMAD4-201ENST00000342988 LINC00587B1AMM8 73 aa15.39■□□□□ 0.05
SMAD4-201ENST00000342988 SMAD4Q13485 552 aaKnown RBP15.39■□□□□ 0.05
SMAD4-201ENST00000342988 RGP1Q92546 391 aaPredicted RBP15.39■□□□□ 0.05
SMAD4-201ENST00000342988 DNAJC4Q9NNZ3 241 aa15.39■□□□□ 0.05
SMAD4-201ENST00000342988 BIVMQ86UB2 503 aa15.39■□□□□ 0.05
SMAD4-201ENST00000342988 MRPL32Q9BYC8 188 aaKnown RBP15.39■□□□□ 0.05
SMAD4-201ENST00000342988 OR2H1Q9GZK4 316 aa15.39■□□□□ 0.05
SMAD4-201ENST00000342988 LTBP3Q9NS15 1303 aa15.39■□□□□ 0.05
SMAD4-201ENST00000342988 ANKRD34AQ69YU3 496 aa15.39■□□□□ 0.05
SMAD4-201ENST00000342988 NRAPQ86VF7 1730 aa15.38■□□□□ 0.05
SMAD4-201ENST00000342988 K7ESM1 405 aa15.38■□□□□ 0.05
SMAD4-201ENST00000342988 SIGLEC5O15389 551 aa15.38■□□□□ 0.05
SMAD4-201ENST00000342988 ARL14EPLP0DKL9 152 aa15.38■□□□□ 0.05
SMAD4-201ENST00000342988 CRYBB2P43320 205 aa15.38■□□□□ 0.05
SMAD4-201ENST00000342988 ZNF430Q9H8G1 570 aaPredicted RBP15.38■□□□□ 0.05
SMAD4-201ENST00000342988 PLPP3O14495 311 aa15.38■□□□□ 0.05
SMAD4-201ENST00000342988 CGB2Q6NT52 195 aa15.38■□□□□ 0.05
SMAD4-201ENST00000342988 SRSF12Q8WXF0 261 aaKnown RBP15.38■□□□□ 0.05
SMAD4-201ENST00000342988 PAX1P15863 534 aa15.38■□□□□ 0.05
SMAD4-201ENST00000342988 HIST1H4AP62805 103 aaKnown RBP15.38■□□□□ 0.05
SMAD4-201ENST00000342988 FAM209AQ5JX71 171 aa15.38■□□□□ 0.05
SMAD4-201ENST00000342988 OR51G1Q8NGK1 321 aa15.38■□□□□ 0.05
SMAD4-201ENST00000342988 SPSB4Q96A44 273 aa15.38■□□□□ 0.05
SMAD4-201ENST00000342988 RHOVQ96L33 236 aa15.38■□□□□ 0.05
SMAD4-201ENST00000342988 AURKAIP1Q9NWT8 199 aaPredicted RBP15.38■□□□□ 0.05
SMAD4-201ENST00000342988 CCL26Q9Y258 94 aa15.38■□□□□ 0.05
SMAD4-201ENST00000342988 A0A0A6YYD5 115 aa15.38■□□□□ 0.05
SMAD4-201ENST00000342988 DNAJC30Q96LL9 226 aa15.38■□□□□ 0.05
SMAD4-201ENST00000342988 SRFP11831 508 aa15.38■□□□□ 0.05
SMAD4-201ENST00000342988 FCARP24071 287 aa15.38■□□□□ 0.05
SMAD4-201ENST00000342988 TMEM42Q69YG0 159 aa15.38■□□□□ 0.05
SMAD4-201ENST00000342988 CLDND2Q8NHS1 167 aa15.38■□□□□ 0.05
SMAD4-201ENST00000342988 ASB10Q8WXI3 467 aa15.38■□□□□ 0.05
SMAD4-201ENST00000342988 ARRDC1-AS1Q9H2J1 176 aa15.38■□□□□ 0.05
SMAD4-201ENST00000342988 GGTLC2Q14390 218 aa15.38■□□□□ 0.05
SMAD4-201ENST00000342988 NCOA6Q14686 2063 aaPredicted RBP15.37■□□□□ 0.05
SMAD4-201ENST00000342988 H0Y980 276 aa15.37■□□□□ 0.05
SMAD4-201ENST00000342988 OTX1P32242 354 aaPredicted RBP15.37■□□□□ 0.05
SMAD4-201ENST00000342988 RPS27P42677 84 aaKnown RBP15.37■□□□□ 0.05
SMAD4-201ENST00000342988 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms